PCDH19 (protocadherin 19) - Rat Genome Database

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Gene: PCDH19 (protocadherin 19) Homo sapiens
Analyze
Symbol: PCDH19
Name: protocadherin 19
RGD ID: 1354208
HGNC Page HGNC:14270
Description: Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to be located in membrane. Predicted to be active in plasma membrane. Implicated in developmental and epileptic encephalopathy 9.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: DEE9; DKFZp686P1843; EFMR; EIEE9; epilepsy, female restricted, with mental retardation (Juberg-Hellman syndrome); KIAA1313; protocadherin-19
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X100,291,644 - 100,410,273 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX100,291,644 - 100,410,273 (-)EnsemblGRCh38hg38GRCh38
GRCh37X99,546,642 - 99,665,271 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X99,433,298 - 99,551,927 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X99,352,786 - 99,468,297NCBI
CeleraX100,067,096 - 100,185,714 (-)NCBICelera
Cytogenetic MapXq22.1NCBI
HuRefX89,347,660 - 89,465,802 (-)NCBIHuRef
CHM1_1X99,439,320 - 99,557,952 (-)NCBICHM1_1
T2T-CHM13v2.0X98,734,021 - 98,852,681 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 20 of 218 rows
Object Symbol
Species
Term
Qualifier
Evidence
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Reference
Notes
Source
Original Reference(s)
PCDH19Humanautism spectrum disorder  IAGPRGD:156435442|RGD:4050042068554872ClinVar Annotator: match by term: Autism spectrum disorderClinVarPMID:25741868
PCDH19Humanautistic disorder  IAGPRGD:143515258554872ClinVar Annotator: match by term: AutismClinVarPMID:21681106|PMID:30208311
PCDH19Humanautosomal hemophilia A  IAGPRGD:4083875868554872ClinVar Annotator: match by term: AUTOSOMAL HEMOPHILIA AClinVarPMID:31690835
PCDH19Humanbenign epilepsy with centrotemporal spikes  IAGPRGD:86405928554872ClinVar Annotator: match by term: Rolandic epilepsyClinVarPMID:19214208|PMID:19752159|PMID:20713952|PMID:25741868|PMID:26467025|PMID:28492532|PMID:29358611
PCDH19Humanchoreatic disease  IAGPRGD:96834638554872ClinVar Annotator: match by term: Choreatic diseaseClinVarPMID:18414213|PMID:25741868|PMID:28492532
PCDH19Humandevelopmental and epileptic encephalopathy 1  IAGPRGD:1552685618554872ClinVar Annotator: match by term: Developmental and epileptic encephalopathy, 1ClinVarPMID:25741868
PCDH19Humandevelopmental and epileptic encephalopathy 9  IAGPRGD:1518905948554872ClinVar Annotator: match by term: Developmental and epileptic encephalopathy, 9ClinVarPMID:19214208|PMID:21053371|PMID:27179713|PMID:28492532
PCDH19Humandevelopmental and epileptic encephalopathy 9  IAGPRGD:96834618554872ClinVar Annotator: match by term: Developmental and epileptic encephalopathy, 9ClinVarPMID:18414213|PMID:26467025|PMID:28492532
PCDH19Humandevelopmental and epileptic encephalopathy 9  IAGPRGD:1267692158554872ClinVar Annotator: match by term: Developmental and epileptic encephalopathy, 9ClinVarPMID:25741868|PMID:26704558|PMID:28492532
PCDH19Humandevelopmental and epileptic encephalopathy 9  IAGPRGD:38474214|RGD:38474691|RGD:38477421|RGD:38477904|RGD:38479639|RGD:38481818|RGD:38481965|RGD:38483393|RGD:38484599|RGD:38484753|RGD:38484807|RGD:38487350|RGD:38489363|RGD:38490258|RGD:38490329|RGD:38498218|RGD:38498261|RGD:38498340|RGD:38498544|RGD:38498979|RGD:401722925|RGD:401732638|RGD:401828273|RGD:401919288|RGD:401919290|RGD:402464140|RGD:402464380|RGD:402464428|RGD:402464467|RGD:402464735|RGD:402464809|RGD:402464919|RGD:402464974|RGD:402465009|RGD:402465052|RGD:402465345|RGD:402465544|RGD:402465630|RGD:402465747|RGD:402465875|RGD:402466157|RGD:402466323|RGD:402466334|RGD:402466337|RGD:402466846|RGD:402466923|RGD:402466973|RGD:402467052|RGD:402467221|RGD:402467460|RGD:402467592|RGD:402467657|RGD:402467792|RGD:402467832|RGD:402468375|RGD:402468379|RGD:402468826|RGD:402468869|RGD:402468896|RGD:402468970|RGD:402469335|RGD:402469348|RGD:402469487|RGD:402469516|RGD:402469858|RGD:402470022|RGD:402470061|RGD:402490454|RGD:402504720|RGD:402505129|RGD:402505145|RGD:402506334|RGD:402506734|RGD:402507031|RGD:402507480|RGD:402508740|RGD:402510299|RGD:402510937|RGD:402511130|RGD:402511901|RGD:402512512|RGD:402513294|RGD:402514750|RGD:402515079|RGD:402515886|RGD:402515928|RGD:402516702|RGD:402516715|RGD:402517609|RGD:402520654|RGD:402520855|RGD:402522994|RGD:402523589|RGD:402524455|RGD:402524797|RGD:404979433|RGD:404979444|RGD:404979965|RGD:404980248|RGD:404980399|RGD:404980677|RGD:404981155|RGD:404981902|RGD:404991762|RGD:404994465|RGD:405011723|RGD:405013115|RGD:405055998|RGD:405118109|RGD:405150117|RGD:405166415|RGD:405166668|RGD:405167647|RGD:405167728|RGD:405167877|RGD:405168469|RGD:405168553|RGD:405168904|RGD:405169114|RGD:405169136|RGD:405169196|RGD:4051692548554872ClinVar Annotator: match by term: Developmental and epileptic encephalopathy, 9 | ClinVar Annotator: match by more ...ClinVarPMID:28492532
PCDH19Humandevelopmental and epileptic encephalopathy 9  IAGPRGD:156029045|RGD:156038717|RGD:156042627|RGD:156046455|RGD:156047431|RGD:156053859|RGD:156059975|RGD:156068512|RGD:156070006|RGD:156090453|RGD:156100232|RGD:156101586|RGD:156115918|RGD:156126615|RGD:156134361|RGD:156134697|RGD:156137840|RGD:156142066|RGD:156144193|RGD:156150694|RGD:156163431|RGD:156165139|RGD:156191598|RGD:156194618|RGD:156198473|RGD:156204439|RGD:156208157|RGD:156210706|RGD:156211376|RGD:156212685|RGD:156214365|RGD:156219043|RGD:156220478|RGD:156221475|RGD:156223340|RGD:156233670|RGD:156251186|RGD:156252611|RGD:156256231|RGD:156259421|RGD:156264418|RGD:156274558|RGD:156282834|RGD:156286206|RGD:156287859|RGD:156288807|RGD:156294386|RGD:156298527|RGD:156303304|RGD:156303715|RGD:156313921|RGD:156315238|RGD:156315967|RGD:156317155|RGD:156324442|RGD:156327612|RGD:156328865|RGD:156329858|RGD:156334492|RGD:156334695|RGD:156346467|RGD:156349502|RGD:156356106|RGD:156366346|RGD:156370190|RGD:156374698|RGD:156376166|RGD:156385625|RGD:156387877|RGD:156391100|RGD:156393978|RGD:156396698|RGD:156398537|RGD:156401756|RGD:156404464|RGD:156404762|RGD:156404973|RGD:156409265|RGD:156409311|RGD:156409988|RGD:156413004|RGD:156414086|RGD:156414673|RGD:156417165|RGD:156439264|RGD:156442270|RGD:156442587|RGD:156446224|RGD:21075151|RGD:26887095|RGD:26888087|RGD:26889165|RGD:26890310|RGD:26890520|RGD:26893929|RGD:26894610|RGD:26897879|RGD:26899785|RGD:26900131|RGD:26900452|RGD:26901085|RGD:26901653|RGD:26903877|RGD:26905623|RGD:26907461|RGD:26911339|RGD:26912938|RGD:26912970|RGD:26913337|RGD:26915056|RGD:26916169|RGD:26916286|RGD:26920243|RGD:329952329|RGD:38456220|RGD:38457576|RGD:38459518|RGD:38461725|RGD:38463966|RGD:38463990|RGD:38464716|RGD:38467738|RGD:38471019|RGD:384713678554872ClinVar Annotator: match by term: Developmental and epileptic encephalopathy, 9 | ClinVar Annotator: match by more ...ClinVarPMID:28492532
PCDH19Humandevelopmental and epileptic encephalopathy 9  IAGPRGD:151779253|RGD:151783320|RGD:151785422|RGD:151787754|RGD:151789040|RGD:151792431|RGD:151793428|RGD:151798306|RGD:151798994|RGD:151801818|RGD:151803897|RGD:151806299|RGD:151807553|RGD:151818190|RGD:151820969|RGD:151823687|RGD:151829076|RGD:151833654|RGD:151834054|RGD:151836454|RGD:151837430|RGD:151838019|RGD:151838629|RGD:151839375|RGD:151842453|RGD:151846300|RGD:151846953|RGD:151847211|RGD:151850334|RGD:151860736|RGD:151861098|RGD:151862960|RGD:151863510|RGD:151865146|RGD:151865154|RGD:151865272|RGD:151865754|RGD:151866191|RGD:151870535|RGD:151870565|RGD:151877547|RGD:151878254|RGD:151879935|RGD:151880399|RGD:151880709|RGD:151883346|RGD:151885242|RGD:151886110|RGD:151891545|RGD:151892797|RGD:151892917|RGD:15189898|RGD:152038573|RGD:152038817|RGD:152040434|RGD:152041834|RGD:152048117|RGD:152050588|RGD:152053913|RGD:152058102|RGD:152070171|RGD:152079575|RGD:152084042|RGD:152085383|RGD:152085966|RGD:152092796|RGD:152094555|RGD:152097908|RGD:152099145|RGD:152104062|RGD:152105640|RGD:152107337|RGD:152112227|RGD:152113564|RGD:152114407|RGD:152114751|RGD:152118502|RGD:152128235|RGD:152138064|RGD:152140440|RGD:152142475|RGD:152144360|RGD:152144835|RGD:152146473|RGD:152165644|RGD:152170241|RGD:152171300|RGD:152173782|RGD:152174825|RGD:153349913|RGD:155678685|RGD:155694497|RGD:155697935|RGD:155698301|RGD:155716755|RGD:155731581|RGD:155737598|RGD:155740368|RGD:155746782|RGD:155747986|RGD:155748651|RGD:155748889|RGD:155911722|RGD:155938342|RGD:155940360|RGD:155945839|RGD:155947880|RGD:155952829|RGD:155954045|RGD:155959780|RGD:155963448|RGD:155987365|RGD:155988829|RGD:155990351|RGD:156007506|RGD:156011408|RGD:156018148|RGD:156019171|RGD:156020195|RGD:156023082|RGD:1560278378554872ClinVar Annotator: match by term: Developmental and epileptic encephalopathy, 9 | ClinVar Annotator: match by more ...ClinVarPMID:28492532
PCDH19Humandevelopmental and epileptic encephalopathy 9  IAGPRGD:8692324|RGD:96834648554872ClinVar Annotator: match by term: Developmental and epileptic encephalopathy, 9ClinVarPMID:18414213|PMID:28492532
PCDH19Humandevelopmental and epileptic encephalopathy 9  IAGPRGD:5978365618554872ClinVar Annotator: match by term: Developmental and epileptic encephalopathy, 9ClinVarPMID:27527380|PMID:28492532
PCDH19Humandevelopmental and epileptic encephalopathy 9  IAGPRGD:12839357|RGD:12839954|RGD:12840715|RGD:12841286|RGD:12842085|RGD:12843812|RGD:12845907|RGD:12881058|RGD:12882324|RGD:12882721|RGD:12886222|RGD:12886326|RGD:12888223|RGD:12888279|RGD:12889017|RGD:12890904|RGD:12892465|RGD:12899534|RGD:12906026|RGD:13212092|RGD:13212416|RGD:13464574|RGD:13466154|RGD:13466285|RGD:13467311|RGD:13468092|RGD:13468441|RGD:13472326|RGD:13497872|RGD:13498315|RGD:13498618|RGD:13500859|RGD:13501142|RGD:13501390|RGD:13503396|RGD:13526167|RGD:13526725|RGD:13535140|RGD:13535576|RGD:13541261|RGD:13610201|RGD:13610203|RGD:13610205|RGD:13610207|RGD:13610264|RGD:13610270|RGD:13610273|RGD:13610276|RGD:13610278|RGD:13610287|RGD:13610291|RGD:13705661|RGD:13802156|RGD:13802730|RGD:13805607|RGD:13805891|RGD:13811497|RGD:13811625|RGD:13815791|RGD:13817119|RGD:13818408|RGD:13820543|RGD:13822319|RGD:13829015|RGD:13830162|RGD:13830545|RGD:13830588|RGD:13830675|RGD:14702317|RGD:14704670|RGD:14707210|RGD:14709944|RGD:14710034|RGD:14711257|RGD:14711795|RGD:14712089|RGD:14712219|RGD:14725105|RGD:14725339|RGD:14729524|RGD:14733591|RGD:14734426|RGD:14734761|RGD:14736734|RGD:14739728|RGD:14739882|RGD:14743751|RGD:150428102|RGD:150495019|RGD:150500227|RGD:150521348|RGD:150541975|RGD:150554622|RGD:15097852|RGD:15098043|RGD:15102865|RGD:15104639|RGD:15112136|RGD:15117474|RGD:15124333|RGD:15128565|RGD:15131070|RGD:15131376|RGD:15133914|RGD:151353581|RGD:15137946|RGD:15151186|RGD:15153863|RGD:15157328|RGD:151715340|RGD:151715375|RGD:151718864|RGD:151721194|RGD:151724380|RGD:151725742|RGD:15172774|RGD:151728970|RGD:151731518|RGD:151732829|RGD:151733254|RGD:151741298|RGD:151746965|RGD:151747968|RGD:151759371|RGD:151762333|RGD:151764039|RGD:151770124|RGD:1517769858554872ClinVar Annotator: match by term: Developmental and epileptic encephalopathy, 9 | ClinVar Annotator: match by more ...ClinVarPMID:28492532
PCDH19Humandevelopmental and epileptic encephalopathy 9  IAGPRGD:10048979|RGD:10049396|RGD:10049398|RGD:10049399|RGD:10049401|RGD:10051491|RGD:10396450|RGD:10396451|RGD:10396452|RGD:10396453|RGD:10396454|RGD:10396459|RGD:10396460|RGD:10396462|RGD:10396463|RGD:10396464|RGD:10396465|RGD:10396466|RGD:10396467|RGD:10396471|RGD:10396472|RGD:10396475|RGD:10396476|RGD:10396477|RGD:10396478|RGD:10397823|RGD:10397825|RGD:10397835|RGD:10397836|RGD:10397840|RGD:10397844|RGD:10397850|RGD:10397855|RGD:10397856|RGD:10397870|RGD:11637228|RGD:11641846|RGD:11643151|RGD:126725716|RGD:126730233|RGD:126730560|RGD:126738378|RGD:126741168|RGD:126743145|RGD:126745265|RGD:126747266|RGD:126748042|RGD:126751645|RGD:126754494|RGD:126755087|RGD:126755316|RGD:126756511|RGD:126757611|RGD:126759533|RGD:126759791|RGD:126760715|RGD:126762199|RGD:126762467|RGD:126762672|RGD:126765903|RGD:126766873|RGD:126768118|RGD:126768424|RGD:126770451|RGD:126770915|RGD:126773529|RGD:126909216|RGD:126913483|RGD:126915635|RGD:126918329|RGD:126918934|RGD:126920973|RGD:126921132|RGD:126921228|RGD:126921940|RGD:126924076|RGD:127233520|RGD:127233653|RGD:127237108|RGD:127237529|RGD:127238604|RGD:127246053|RGD:127251360|RGD:127251954|RGD:127252439|RGD:127253915|RGD:127256567|RGD:127258113|RGD:127262694|RGD:127264158|RGD:127266440|RGD:127270827|RGD:127270887|RGD:127273291|RGD:127280126|RGD:127283266|RGD:127283905|RGD:127287142|RGD:127288871|RGD:127296704|RGD:127299562|RGD:127300859|RGD:127306897|RGD:127308247|RGD:127317885|RGD:127318182|RGD:127321343|RGD:127324084|RGD:127325376|RGD:127329118|RGD:127330246|RGD:127332841|RGD:127337022|RGD:127337110|RGD:127337131|RGD:12743081|RGD:12833623|RGD:12833961|RGD:12834623|RGD:12835098|RGD:12835584|RGD:12836451|RGD:12837112|RGD:128384318554872ClinVar Annotator: match by term: Developmental and epileptic encephalopathy, 9 | ClinVar Annotator: match by more ...ClinVarPMID:28492532
PCDH19Humandevelopmental and epileptic encephalopathy 9  IAGPRGD:10397832|RGD:103978428554872ClinVar Annotator: match by term: Developmental and epileptic encephalopathy, 9ClinVarPMID:28492532|PMID:29377098
PCDH19Humandevelopmental and epileptic encephalopathy 9  IAGPRGD:13540051|RGD:13805479|RGD:1518104098554872ClinVar Annotator: match by term: Developmental and epileptic encephalopathy, 9 | ClinVar Annotator: match by more ...ClinVarPMID:28492532|PMID:34082468
PCDH19Humandevelopmental and epileptic encephalopathy 9  IAGPRGD:12890951|RGD:13462457|RGD:14697760|RGD:151233119|RGD:151771603|RGD:153348471|RGD:5969279638554872ClinVar Annotator: match by term: Developmental and epileptic encephalopathy, 9 | ClinVar Annotator: match by more ...ClinVarPMID:21053371|PMID:25741868|PMID:28492532
PCDH19Humandevelopmental and epileptic encephalopathy 9  IAGPRGD:134697398554872ClinVar Annotator: match by term: Developmental and epileptic encephalopathy, 9ClinVarPMID:21053371|PMID:26467025|PMID:28492532
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PCDH19Humandevelopmental and epileptic encephalopathy 9  EXP 11554173CTD Direct Evidence: marker/mechanismCTD 
PCDH19Humanepilepsy  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:18469813
PCDH19HumanX-Linked Intellectual Developmental Disorders  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:18469813
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PCDH19Humandevelopmental and epileptic encephalopathy 9  IAGP 7240710 OMIM 

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PCDH19Human1,2-dichloroethane decreases expressionISORGD:16228646480464ethylene dichloride results in decreased expression of PCDH19 mRNACTDPMID:28960355
PCDH19Human1,2-dimethylhydrazine increases expressionISORGD:162286464804641,2-Dimethylhydrazine results in increased expression of PCDH19 mRNACTDPMID:22206623
PCDH19Human1-naphthyl isothiocyanate increases expressionISORGD:156539264804641-Naphthylisothiocyanate results in increased expression of PCDH19 mRNACTDPMID:30723492
PCDH19Human17alpha-ethynylestradiol increases expressionISORGD:15653926480464Ethinyl Estradiol results in increased expression of PCDH19 mRNACTDPMID:29097150
PCDH19Human17beta-estradiol decreases expressionEXP 6480464Estradiol results in decreased expression of PCDH19 mRNACTDPMID:21185374
PCDH19Human2,2',4,4'-Tetrabromodiphenyl ether multiple interactionsISORGD:16228646480464[Flame Retardants results in increased abundance of 2,2',4,4'-tetrabromodiphenyl ether] which results in decreased expression of more ...CTDPMID:38995820
PCDH19Human2,3,7,8-tetrachlorodibenzodioxine increases expressionISORGD:16228646480464Tetrachlorodibenzodioxin results in increased expression of PCDH19 mRNACTDPMID:19933214
PCDH19Human2,3,7,8-tetrachlorodibenzodioxine decreases expressionISORGD:15653926480464Tetrachlorodibenzodioxin results in decreased expression of PCDH19 mRNACTDPMID:33387578
PCDH19Human2,3,7,8-tetrachlorodibenzodioxine affects expressionISORGD:15653926480464Tetrachlorodibenzodioxin affects the expression of PCDH19 mRNACTDPMID:34747641
PCDH19Human2,3,7,8-tetrachlorodibenzodioxine affects expressionISORGD:16228646480464Tetrachlorodibenzodioxin affects the expression of PCDH19 mRNACTDPMID:26377647
PCDH19Human2,3,7,8-Tetrachlorodibenzofuran decreases expressionISORGD:156539264804642,3,7,8-tetrachlorodibenzofuran results in decreased expression of PCDH19 mRNACTDPMID:32109520
PCDH19Human3,4-methylenedioxymethamphetamine increases expressionISORGD:16228646480464N-Methyl-3,4-methylenedioxyamphetamine results in increased expression of PCDH19 mRNACTDPMID:26251327
PCDH19Human3,7-dihydropurine-6-thione decreases expressionISORGD:15653926480464Mercaptopurine results in decreased expression of PCDH19 mRNACTDPMID:23358152
PCDH19Human4,4'-sulfonyldiphenol decreases methylationEXP 6480464bisphenol S results in decreased methylation of PCDH19 geneCTDPMID:31601247
PCDH19Human4-Chloro-ortho-phenylenediamine affects response to substanceEXP 6480464PCDH19 gene SNP affects the susceptibility to 4-chloro-1,2-diaminobenzeneCTDPMID:25622337
PCDH19Human5-aza-2'-deoxycytidine multiple interactionsEXP 6480464[Decitabine co-treated with trichostatin A] results in increased expression of PCDH19 mRNACTDPMID:17891453
PCDH19Human6-propyl-2-thiouracil increases expressionISORGD:15653926480464Propylthiouracil results in increased expression of PCDH19 mRNACTDPMID:24780913
PCDH19Humanaflatoxin B1 increases expressionISORGD:15653926480464Aflatoxin B1 results in increased expression of PCDH19 mRNACTDPMID:23630614
PCDH19Humanaflatoxin B1 decreases methylationEXP 6480464Aflatoxin B1 results in decreased methylation of PCDH19 geneCTDPMID:27153756
PCDH19Humanall-trans-retinoic acid increases expressionEXP 6480464Tretinoin results in increased expression of PCDH19 mRNACTDPMID:21934132

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Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PCDH19Humancell adhesion involved_inIBAMGI:106671|MGI:1298369|MGI:1338042|MGI:1855700|MGI:2136740|MGI:2684924|PANTHER:PTN001932250|RGD:620504|UniProtKB:A0A8J1ME87|UniProtKB:Q9HBB8|ZFIN:ZDB-GENE-000607-1|ZFIN:ZDB-GENE-030131-4218150520179 GO_CentralGO_REF:0000033
PCDH19Humancell adhesion involved_inIEAInterPro:IPR020894150520179 InterProGO_REF:0000002
PCDH19Humancell adhesion involved_inIEAUniProtKB-KW:KW-0130150520179 UniProtGO_REF:0000043
PCDH19Humanhomophilic cell adhesion via plasma membrane adhesion molecules involved_inIEAInterPro:IPR002126150520179 InterProGO_REF:0000002

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PCDH19Humanmembrane located_inIEAInterPro:IPR002126|InterPro:IPR015919150520179 InterProGO_REF:0000002
PCDH19Humanmembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043
PCDH19Humanmembrane located_inIEAUniProtKB-SubCell:SL-0162150520179 UniProtGO_REF:0000044
PCDH19Humanplasma membrane located_inIEAInterPro:IPR020894150520179 InterProGO_REF:0000002
PCDH19Humanplasma membrane is_active_inIBAMGI:106671|MGI:1298369|MGI:1338042|MGI:1891428|MGI:2136740|MGI:2136752|MGI:2157782|MGI:2684924|PANTHER:PTN001932250|RGD:1306348|RGD:69350|UniProtKB:O60245|UniProtKB:Q9HBB8|WB:WBGene00000395|ZFIN:ZDB-GENE-000607-1|ZFIN:ZDB-GENE-030131-4218150520179 GO_CentralGO_REF:0000033
PCDH19Humanplasma membrane located_inIEAUniProtKB-KW:KW-1003150520179 UniProtGO_REF:0000043
PCDH19Humanplasma membrane located_inIEAUniProtKB-SubCell:SL-0039150520179 UniProtGO_REF:0000044

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PCDH19Humancalcium ion binding enablesIEAUniRule:UR000413450150520179 UniProtGO_REF:0000104
PCDH19Humancalcium ion binding enablesIEAInterPro:IPR002126|InterPro:IPR015919150520179 InterProGO_REF:0000002
PCDH19Humanmetal ion binding enablesIEAUniProtKB-KW:KW-0479150520179 UniProtGO_REF:0000043

1 to 20 of 73 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PCDH19HumanAbnormal eating behavior  IAGP 8699517 HPOORPHA:101039
PCDH19HumanAbnormal social behavior  IAGP 8699517 HPOORPHA:101039
PCDH19HumanAction tremor  IAGP 8699517 HPOORPHA:33069
PCDH19HumanAggressive behavior  IAGP 8699517 HPOMIM:300088|ORPHA:101039
PCDH19HumanAnxiety  IAGP 8699517 HPOORPHA:101039|ORPHA:33069
PCDH19HumanAtonic seizure  IAGP 8699517 HPOMIM:300088|PMID:19752159|ORPHA:101039
PCDH19HumanAttention deficit hyperactivity disorder  IAGP 8699517 HPOMIM:300088|PMID:19752159
PCDH19HumanAtypical absence seizure  IAGP 8699517 HPOORPHA:101039|ORPHA:33069
PCDH19HumanAtypical behavior  IAGP 8699517 HPOORPHA:101039
PCDH19HumanAutistic behavior  IAGP 8699517 HPOMIM:300088|PMID:19752159|ORPHA:101039|ORPHA:33069
PCDH19HumanBilateral tonic-clonic seizure  IAGP 8699517 HPOMIM:300088|ORPHA:101039
PCDH19HumanBilateral tonic-clonic seizure with generalized onset  IAGP 8699517 HPOMIM:300088|PMID:19752159
PCDH19HumanBradykinesia  IAGP 8699517 HPOORPHA:33069
PCDH19HumanChildhood onset  IAGP 8699517 HPOMIM:300088|PMID:19752159
PCDH19HumanCognitive impairment  IAGP 8699517 HPOORPHA:33069
PCDH19HumanCogwheel rigidity  IAGP 8699517 HPOORPHA:33069
PCDH19HumanComplex febrile seizure  IAGP 8699517 HPOORPHA:101039|ORPHA:33069
PCDH19HumanCompulsive behaviors  IAGP 8699517 HPOORPHA:101039
PCDH19HumanConvulsive status epilepticus  IAGP 8699517 HPOMIM:300088|PMID:19752159
PCDH19HumanCyanotic episode  IAGP 8699517 HPOORPHA:33069
1 to 20 of 73 rows
1 to 20 of 48 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PCDH19HumanAbnormal cerebral morphology  IAGPRGD:1533499138554872ClinVar Annotator: match by term: Abnormal cerebral morphologyClinVarPMID:28492532
PCDH19HumanAbnormal cerebral morphology  IAGPRGD:1267692158554872ClinVar Annotator: match by term: Abnormality of the cerebrumClinVarPMID:25741868|PMID:26704558|PMID:28492532
PCDH19HumanAutism  IAGPRGD:143515258554872ClinVar Annotator: match by term: AutismClinVarPMID:21681106|PMID:30208311
PCDH19HumanAutistic behavior  IAGPRGD:4050042068554872ClinVar Annotator: match by term: Autism spectrum disorderClinVarPMID:25741868
PCDH19HumanAutistic behavior  IAGPRGD:1564354428554872ClinVar Annotator: match by term: Autism spectrum disorderClinVarPMID:25741868
PCDH19HumanBilateral tonic-clonic seizure  IAGPRGD:1513498148554872ClinVar Annotator: match by term: Bilateral tonic-clonic seizureClinVarPMID:25741868
PCDH19HumanBilateral tonic-clonic seizure  IAGPRGD:137961018554872ClinVar Annotator: match by term: Bilateral tonic-clonic seizureClinVar 
PCDH19HumanBilateral tonic-clonic seizure  IAGPRGD:103972348554872ClinVar Annotator: match by term: Bilateral tonic-clonic seizureClinVarPMID:18469813|PMID:21053371|PMID:22267240|PMID:22946748|PMID:23334464|PMID:25741868|PMID:27143072|PMID:27527380|PMID:28492532|PMID:5116697
PCDH19HumanChorea  IAGPRGD:96834638554872ClinVar Annotator: match by term: Choreiform movementsClinVarPMID:18414213|PMID:25741868|PMID:28492532
PCDH19HumanChoreoathetosis  IAGPRGD:96834638554872ClinVar Annotator: match by term: Choreoathetoid movementsClinVarPMID:18414213|PMID:25741868|PMID:28492532
PCDH19HumanComplex febrile seizure  IAGPRGD:269027628554872ClinVar Annotator: match by term: Complex febrile seizuresClinVarPMID:25741868
PCDH19HumanDelayed speech and language development  IAGPRGD:103972348554872ClinVar Annotator: match by term: Poor speech developmentClinVarPMID:18469813|PMID:21053371|PMID:22267240|PMID:22946748|PMID:23334464|PMID:25741868|PMID:27143072|PMID:27527380|PMID:28492532|PMID:5116697
PCDH19HumanEpileptic encephalopathy  IAGPRGD:4019646198554872ClinVar Annotator: match by term: Epileptic encephalopathyClinVarPMID:25741868
PCDH19HumanFocal-onset seizure  IAGPRGD:427235558554872ClinVar Annotator: match by term: Focal-onset seizureClinVarPMID:25741868|PMID:28492532|PMID:29377098
PCDH19HumanFrontal cortical atrophy  IAGPRGD:103972348554872ClinVar Annotator: match by term: Frontal cortex degenerationClinVarPMID:18469813|PMID:21053371|PMID:22267240|PMID:22946748|PMID:23334464|PMID:25741868|PMID:27143072|PMID:27527380|PMID:28492532|PMID:5116697
PCDH19HumanGeneralized non-motor (absence) seizure  IAGPRGD:103972348554872ClinVar Annotator: match by term: Petit mal seizuresClinVarPMID:18469813|PMID:21053371|PMID:22267240|PMID:22946748|PMID:23334464|PMID:25741868|PMID:27143072|PMID:27527380|PMID:28492532|PMID:5116697
PCDH19HumanGeneralized-onset seizure  IAGPRGD:103972348554872ClinVar Annotator: match by term: Generalized seizuresClinVarPMID:18469813|PMID:21053371|PMID:22267240|PMID:22946748|PMID:23334464|PMID:25741868|PMID:27143072|PMID:27527380|PMID:28492532|PMID:5116697
PCDH19HumanGlobal developmental delay  IAGPRGD:103972348554872ClinVar Annotator: match by term: Global developmental delayClinVarPMID:18469813|PMID:21053371|PMID:22267240|PMID:22946748|PMID:23334464|PMID:25741868|PMID:27143072|PMID:27527380|PMID:28492532|PMID:5116697
PCDH19HumanHand tremor  IAGPRGD:103972348554872ClinVar Annotator: match by term: tremors in handsClinVarPMID:18469813|PMID:21053371|PMID:22267240|PMID:22946748|PMID:23334464|PMID:25741868|PMID:27143072|PMID:27527380|PMID:28492532|PMID:5116697
PCDH19HumanIntellectual disability  IAGPRGD:394570928554872ClinVar Annotator: match by term: Intellectual disabilityClinVarPMID:25741868
1 to 20 of 48 rows

#
Reference Title
Reference Citation
1. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. RGD HPO Phenotype Annotation Pipeline RGD automated import pipeline for human HPO-to-gene-to-disease annotations
PMID:2126489   PMID:5116697   PMID:8889548   PMID:9288105   PMID:10718198   PMID:11549318   PMID:12477932   PMID:14702039   PMID:15772651   PMID:16261168   PMID:16344560   PMID:18469813  
PMID:19214208   PMID:19752159   PMID:20713952   PMID:20830798   PMID:21053371   PMID:21480887   PMID:21504426   PMID:21519002   PMID:21777234   PMID:21873635   PMID:22050978   PMID:22091964  
PMID:22504056   PMID:22848613   PMID:22946748   PMID:22949144   PMID:23066759   PMID:23093055   PMID:23334464   PMID:23712037   PMID:25204757   PMID:25218114   PMID:25227595   PMID:25499160  
PMID:25510386   PMID:25818041   PMID:25891919   PMID:26123493   PMID:26450854   PMID:26765483   PMID:26820223   PMID:26898795   PMID:27016041   PMID:27179713   PMID:27527380   PMID:28462982  
PMID:28471529   PMID:28514442   PMID:28669061   PMID:29301106   PMID:29377098   PMID:29749051   PMID:29763708   PMID:29866057   PMID:29892053   PMID:30021884   PMID:30287595   PMID:30431232  
PMID:30451291   PMID:30582250   PMID:31678000   PMID:31753913   PMID:31871319   PMID:32062451   PMID:32105270   PMID:32314541   PMID:32366910   PMID:32852734   PMID:33087045   PMID:33262389  
PMID:33937968   PMID:33961781   PMID:34079125   PMID:34331950   PMID:34520737   PMID:34709727   PMID:35393670   PMID:35613587   PMID:35978409   PMID:36408521   PMID:36976175   PMID:36980870  
PMID:38238304   PMID:38454084   PMID:38891919  



PCDH19
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X100,291,644 - 100,410,273 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX100,291,644 - 100,410,273 (-)EnsemblGRCh38hg38GRCh38
GRCh37X99,546,642 - 99,665,271 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X99,433,298 - 99,551,927 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X99,352,786 - 99,468,297NCBI
CeleraX100,067,096 - 100,185,714 (-)NCBICelera
Cytogenetic MapXq22.1NCBI
HuRefX89,347,660 - 89,465,802 (-)NCBIHuRef
CHM1_1X99,439,320 - 99,557,952 (-)NCBICHM1_1
T2T-CHM13v2.0X98,734,021 - 98,852,681 (-)NCBIT2T-CHM13v2.0
Pcdh19
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X132,483,609 - 132,589,802 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX132,483,609 - 132,589,736 (-)EnsemblGRCm39 Ensembl
GRCm38X133,582,860 - 133,689,044 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX133,582,860 - 133,688,987 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X130,117,399 - 130,223,532 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X128,933,367 - 129,035,343 (-)NCBIMGSCv36mm8
CeleraX116,456,789 - 116,562,258 (-)NCBICelera
Cytogenetic MapXE3NCBI
cM MapX55.21NCBI
Pcdh19
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X101,061,002 - 101,166,777 (-)NCBIGRCr8
mRatBN7.2X96,767,686 - 96,873,477 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX96,771,947 - 96,873,524 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX98,446,113 - 98,545,930 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X101,955,888 - 102,055,706 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X99,460,081 - 99,559,883 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X104,387,346 - 104,493,914 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX104,391,607 - 104,493,757 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X104,230,786 - 104,335,207 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X121,108,772 - 121,209,099 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX97,823,518 - 97,922,991 (-)NCBICelera
Cytogenetic MapXq32NCBI
Pcdh19
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555036,434,047 - 6,567,253 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555036,428,894 - 6,567,253 (-)NCBIChiLan1.0ChiLan1.0
PCDH19
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X99,901,156 - 100,018,434 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X99,904,761 - 100,022,039 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X89,504,404 - 89,622,354 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X99,643,595 - 99,759,631 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX99,643,595 - 99,759,631 (-)Ensemblpanpan1.1panPan2
PCDH19
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X74,179,609 - 74,319,138 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX74,184,772 - 74,317,391 (-)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0X75,589,131 - 75,726,986 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX75,594,295 - 75,727,552 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X73,151,338 - 73,289,267 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X74,820,721 - 74,958,753 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X74,582,488 - 74,720,481 (-)NCBIUU_Cfam_GSD_1.0
Pcdh19
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X63,884,867 - 63,984,266 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365845,568,728 - 5,668,116 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365845,568,740 - 5,668,095 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PCDH19
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX82,036,199 - 82,151,652 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X82,031,365 - 82,153,159 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X89,912,438 - 89,992,739 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PCDH19
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X88,613,546 - 88,730,740 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX88,616,743 - 88,730,519 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606513,547,408 - 13,659,207 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pcdh19
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249022,354,856 - 2,502,527 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249022,354,109 - 2,502,478 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in PCDH19
1280 total Variants

1 to 10 of 1654 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
NM_001184880.2(PCDH19):c.1700C>T (p.Pro567Leu) single nucleotide variant Developmental and epileptic encephalopathy, 9 [RCV000763636]|not provided [RCV000521156] ChrX:100406898 [GRCh38]
ChrX:99661896 [GRCh37]
ChrX:Xq22.1
pathogenic|likely pathogenic|conflicting interpretations of pathogenicity
NM_001184880.2(PCDH19):c.209_210del (p.His70fs) microsatellite not provided [RCV000517089] ChrX:100408388..100408389 [GRCh38]
ChrX:99663386..99663387 [GRCh37]
ChrX:Xq22.1
pathogenic
NM_001184880.2(PCDH19):c.2994T>C (p.Thr998=) single nucleotide variant Developmental and epileptic encephalopathy, 9 [RCV001419244]|Inborn genetic diseases [RCV002438374] ChrX:100296730 [GRCh38]
ChrX:99551728 [GRCh37]
ChrX:Xq22.1
likely benign
NM_001184880.2(PCDH19):c.1079A>C (p.Glu360Ala) single nucleotide variant not provided [RCV000520491] ChrX:100407519 [GRCh38]
ChrX:99662517 [GRCh37]
ChrX:Xq22.1
uncertain significance
NM_001184880.2(PCDH19):c.701A>G (p.Asn234Ser) single nucleotide variant not provided [RCV000523297] ChrX:100407897 [GRCh38]
ChrX:99662895 [GRCh37]
ChrX:Xq22.1
likely pathogenic
NM_001184880.2(PCDH19):c.2453del (p.Gln818fs) deletion Developmental and epileptic encephalopathy, 9 [RCV000555563] ChrX:100402687 [GRCh38]
ChrX:99657685 [GRCh37]
ChrX:Xq22.1
pathogenic
NM_001184880.2(PCDH19):c.2798A>G (p.Asp933Gly) single nucleotide variant Developmental and epileptic encephalopathy, 9 [RCV001857916]|not specified [RCV000516258] ChrX:100341953 [GRCh38]
ChrX:99596951 [GRCh37]
ChrX:Xq22.1
uncertain significance
NM_001184880.2(PCDH19):c.1555C>T (p.Arg519Ter) single nucleotide variant Developmental and epileptic encephalopathy, 9 [RCV000641125] ChrX:100407043 [GRCh38]
ChrX:99662041 [GRCh37]
ChrX:Xq22.1
pathogenic
NM_001184880.2(PCDH19):c.2191G>A (p.Gly731Arg) single nucleotide variant Developmental and epileptic encephalopathy, 9 [RCV000641128] ChrX:100403621 [GRCh38]
ChrX:99658619 [GRCh37]
ChrX:Xq22.1
uncertain significance
NM_001184880.2(PCDH19):c.2391C>G (p.Asp797Glu) single nucleotide variant Developmental and epileptic encephalopathy, 9 [RCV000641129] ChrX:100402749 [GRCh38]
ChrX:99657747 [GRCh37]
ChrX:Xq22.1
uncertain significance
1 to 10 of 1654 rows

Predicted Target Of
Summary Value
Count of predictions:11132
Count of miRNA genes:1334
Interacting mature miRNAs:1766
Transcripts:ENST00000255531, ENST00000373034, ENST00000420881, ENST00000464981
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

DXS8034  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X99,626,788 - 99,627,063UniSTSGRCh37
Build 36X99,513,444 - 99,513,719RGDNCBI36
CeleraX100,147,234 - 100,147,509RGD
Cytogenetic MapXq22.1UniSTS
HuRefX89,427,439 - 89,427,720UniSTS
Marshfield Genetic MapX65.5RGD
Marshfield Genetic MapX65.5UniSTS
Genethon Genetic MapX113.5UniSTS
deCODE Assembly MapX101.2UniSTS
Whitehead-YAC Contig MapX UniSTS
DXS8020  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X99,568,725 - 99,568,923UniSTSGRCh37
Build 36X99,455,381 - 99,455,579RGDNCBI36
CeleraX100,089,181 - 100,089,379RGD
Cytogenetic MapXq22.1UniSTS
HuRefX89,369,883 - 89,370,081UniSTS
Marshfield Genetic MapX65.5RGD
Marshfield Genetic MapX65.5UniSTS
Genethon Genetic MapX113.6UniSTS
deCODE Assembly MapX101.2UniSTS
Whitehead-YAC Contig MapX UniSTS
SHGC-152336  
Human AssemblyChrPosition (strand)SourceJBrowse
CeleraX100,089,174 - 100,089,363RGD
Cytogenetic MapXq22.1UniSTS
HuRefX89,369,876 - 89,370,065UniSTS
TNG Radiation Hybrid Map1258489.0UniSTS
SHGC-151197  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X99,568,718 - 99,568,836UniSTSGRCh37
Build 36X99,455,374 - 99,455,492RGDNCBI36
CeleraX100,089,174 - 100,089,292RGD
Cytogenetic MapXq22.1UniSTS
HuRefX89,369,876 - 89,369,994UniSTS
TNG Radiation Hybrid MapX22351.0UniSTS
DXS7486  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X99,550,922 - 99,551,171UniSTSGRCh37
Build 36X99,437,578 - 99,437,827RGDNCBI36
CeleraX100,071,376 - 100,071,625RGD
Cytogenetic MapXq22.1UniSTS
HuRefX89,351,940 - 89,352,189UniSTS
Whitehead-YAC Contig MapX UniSTS
DXS7002E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X99,551,020 - 99,551,133UniSTSGRCh37
Build 36X99,437,676 - 99,437,789RGDNCBI36
CeleraX100,071,474 - 100,071,587RGD
Cytogenetic MapXq22.1UniSTS
HuRefX89,352,038 - 89,352,151UniSTS
GeneMap99-GB4 RH MapX270.17UniSTS
REN111392  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377126,230,276 - 126,230,531UniSTSGRCh37
GRCh371847,304,471 - 47,304,727UniSTSGRCh37
Build 367126,017,512 - 126,017,767RGDNCBI36
Celera7121,031,666 - 121,031,921RGD
Celera1844,161,136 - 44,161,392UniSTS
HuRef1844,158,896 - 44,159,152UniSTS
HuRef198,007,434 - 98,007,694UniSTS
HuRef7120,590,671 - 120,590,926UniSTS
HuRefX89,360,784 - 89,361,045UniSTS
CRA_TCAGchr7v27125,613,422 - 125,613,677UniSTS
G13210  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X99,546,669 - 99,546,775UniSTSGRCh37
Build 36X99,433,325 - 99,433,431RGDNCBI36
CeleraX100,067,123 - 100,067,229RGD
Cytogenetic MapXq22.1UniSTS
HuRefX89,347,687 - 89,347,793UniSTS
WI-14790  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X99,549,989 - 99,550,091UniSTSGRCh37
Build 36X99,436,645 - 99,436,747RGDNCBI36
CeleraX100,070,443 - 100,070,545RGD
Cytogenetic MapXq22.1UniSTS
HuRefX89,351,007 - 89,351,109UniSTS
GeneMap99-GB4 RH MapX272.33UniSTS
Whitehead-RH MapX250.7UniSTS
AFM019TA1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X99,618,835 - 99,618,912UniSTSGRCh37
Build 36X99,505,491 - 99,505,568RGDNCBI36
CeleraX100,139,281 - 100,139,358RGD
Cytogenetic MapXq22.1UniSTS
HuRefX89,419,408 - 89,419,493UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2364 2787 2225 4879 1619 2148 2 534 883 376 2206 6036 5400 38 3704 773 1692 1503 169 1


1 to 18 of 18 rows
RefSeq Transcripts NG_021319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001105243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001184880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_020766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB037734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK055951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK096591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL355593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL590412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC136628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM975868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR749278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA500179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF676096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OQ064433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OQ064434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 18 of 18 rows

Ensembl Acc Id: ENST00000255531   ⟹   ENSP00000255531
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX100,291,646 - 100,408,597 (-)Ensembl
Ensembl Acc Id: ENST00000373034   ⟹   ENSP00000362125
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX100,291,644 - 100,410,273 (-)Ensembl
Ensembl Acc Id: ENST00000420881   ⟹   ENSP00000400327
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX100,291,644 - 100,408,597 (-)Ensembl
Ensembl Acc Id: ENST00000464981   ⟹   ENSP00000479805
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX100,291,647 - 100,296,300 (-)Ensembl
Ensembl Acc Id: ENST00000636150   ⟹   ENSP00000490463
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX100,350,662 - 100,406,515 (-)Ensembl
RefSeq Acc Id: NM_001105243   ⟹   NP_001098713
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38X100,291,644 - 100,410,273 (-)NCBI
GRCh37X99,546,642 - 99,665,271 (-)ENTREZGENE
Build 36X99,433,298 - 99,551,927 (-)NCBI Archive
HuRefX89,347,660 - 89,465,802 (-)ENTREZGENE
CHM1_1X99,439,320 - 99,557,952 (-)NCBI
T2T-CHM13v2.0X98,734,021 - 98,852,681 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001184880   ⟹   NP_001171809
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38X100,291,644 - 100,410,273 (-)NCBI
GRCh37X99,546,642 - 99,665,271 (-)ENTREZGENE
HuRefX89,347,660 - 89,465,802 (-)ENTREZGENE
CHM1_1X99,439,320 - 99,557,952 (-)NCBI
T2T-CHM13v2.0X98,734,021 - 98,852,681 (-)NCBI
Sequence:
RefSeq Acc Id: NM_020766   ⟹   NP_065817
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38X100,291,644 - 100,410,273 (-)NCBI
GRCh37X99,546,642 - 99,665,271 (-)ENTREZGENE
Build 36X99,433,298 - 99,551,927 (-)NCBI Archive
HuRefX89,347,660 - 89,465,802 (-)ENTREZGENE
CHM1_1X99,439,320 - 99,557,952 (-)NCBI
T2T-CHM13v2.0X98,734,021 - 98,852,681 (-)NCBI
Sequence:
RefSeq Acc Id: NP_065817   ⟸   NM_020766
- Peptide Label: isoform b precursor
- UniProtKB: Q8TAB3 (UniProtKB/Swiss-Prot),   B3KU71 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001098713   ⟸   NM_001105243
- Peptide Label: isoform a precursor
- UniProtKB: Q8TAB3 (UniProtKB/Swiss-Prot),   B3KU71 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001171809   ⟸   NM_001184880
- Peptide Label: isoform c precursor
- UniProtKB: Q68DT7 (UniProtKB/Swiss-Prot),   Q5JTG2 (UniProtKB/Swiss-Prot),   Q5JTG1 (UniProtKB/Swiss-Prot),   E9PAM6 (UniProtKB/Swiss-Prot),   B0LDS4 (UniProtKB/Swiss-Prot),   Q9P2N3 (UniProtKB/Swiss-Prot),   Q8TAB3 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSP00000479805   ⟸   ENST00000464981
Ensembl Acc Id: ENSP00000490463   ⟸   ENST00000636150
Cadherin

Name Modeler Protein Id AA Range Protein Structure
AF-Q8TAB3-F1-model_v2 AlphaFold Q8TAB3 1-1148 view protein structure

RGD ID:6809102
Promoter ID:HG_KWN:67462
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell_2Hour
Transcripts:NM_001105243,   NM_020766,   UC010NMZ.1
Position:
Human AssemblyChrPosition (strand)Source
Build 36X99,548,126 - 99,548,626 (-)MPROMDB
RGD ID:13627582
Promoter ID:EPDNEW_H29066
Type:initiation region
Name:PCDH19_1
Description:protocadherin 19
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H29068  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38X100,410,273 - 100,410,333EPDNEW


1 to 40 of 47 rows
Database
Acc Id
Source(s)
COSMIC PCDH19 COSMIC
Ensembl Genes ENSG00000165194 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000255531 ENTREZGENE
  ENST00000255531.8 UniProtKB/Swiss-Prot
  ENST00000373034 ENTREZGENE
  ENST00000373034.8 UniProtKB/Swiss-Prot
  ENST00000420881 ENTREZGENE
  ENST00000420881.6 UniProtKB/Swiss-Prot
Gene3D-CATH Cadherins UniProtKB/Swiss-Prot
GTEx ENSG00000165194 GTEx
HGNC ID HGNC:14270 ENTREZGENE
Human Proteome Map PCDH19 Human Proteome Map
InterPro Cadherin-like_dom UniProtKB/Swiss-Prot
  Cadherin-like_sf UniProtKB/Swiss-Prot
  Cadherin_CS UniProtKB/Swiss-Prot
  Cadherin_N UniProtKB/Swiss-Prot
  Protocadherin/Cadherin-CA UniProtKB/Swiss-Prot
KEGG Report hsa:57526 UniProtKB/Swiss-Prot
NCBI Gene 57526 ENTREZGENE
OMIM 300460 OMIM
PANTHER CADHERIN-87A UniProtKB/Swiss-Prot
  PTHR24028:SF40 UniProtKB/Swiss-Prot
Pfam Cadherin UniProtKB/Swiss-Prot
  Cadherin_2 UniProtKB/Swiss-Prot
PharmGKB PA33003 PharmGKB
PRINTS CADHERIN UniProtKB/Swiss-Prot
PROSITE CADHERIN_1 UniProtKB/Swiss-Prot
  CADHERIN_2 UniProtKB/Swiss-Prot
SMART SM00112 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF49313 UniProtKB/Swiss-Prot
UniProt A0A1B0GVC8_HUMAN UniProtKB/TrEMBL
  A0A1Y8EN23_HUMAN UniProtKB/TrEMBL
  B0LDS4 ENTREZGENE
  B3KU71 ENTREZGENE, UniProtKB/TrEMBL
  E9PAM6 ENTREZGENE
  PCD19_HUMAN UniProtKB/Swiss-Prot
  Q5JTG1 ENTREZGENE
  Q5JTG2 ENTREZGENE
  Q68DT7 ENTREZGENE
  Q8TAB3 ENTREZGENE
1 to 40 of 47 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-05 PCDH19  protocadherin 19  EFMR  epilepsy, female restricted, with mental retardation (Juberg-Hellman syndrome)  Data merged from RGD:1349722 737654 PROVISIONAL