Pcdh19 (protocadherin 19) - Rat Genome Database

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Gene: Pcdh19 (protocadherin 19) Heterocephalus glaber
Analyze
Symbol: Pcdh19
Name: protocadherin 19
RGD ID: 18917841
Description: ENCODES a protein that exhibits calcium ion binding (inferred); INVOLVED IN cell adhesion (inferred); homophilic cell adhesion via plasma membrane adhesion molecules (inferred); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); benign epilepsy with centrotemporal spikes (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Protocadherin-19
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249022,354,856 - 2,502,527 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249022,354,109 - 2,502,478 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:21993625   PMID:22301074  


Genomics

Comparative Map Data
Pcdh19
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249022,354,856 - 2,502,527 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249022,354,109 - 2,502,478 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
PCDH19
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X100,291,644 - 100,410,273 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX100,291,644 - 100,410,273 (-)EnsemblGRCh38hg38GRCh38
GRCh37X99,546,642 - 99,665,271 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X99,433,298 - 99,551,927 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X99,352,786 - 99,468,297NCBI
CeleraX100,067,096 - 100,185,714 (-)NCBICelera
Cytogenetic MapXq22.1NCBI
HuRefX89,347,660 - 89,465,802 (-)NCBIHuRef
CHM1_1X99,439,320 - 99,557,952 (-)NCBICHM1_1
T2T-CHM13v2.0X98,734,021 - 98,852,681 (-)NCBIT2T-CHM13v2.0
Pcdh19
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X132,483,609 - 132,589,802 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX132,483,609 - 132,589,736 (-)EnsemblGRCm39 Ensembl
GRCm38X133,582,860 - 133,689,044 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX133,582,860 - 133,688,987 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X130,117,399 - 130,223,532 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X128,933,367 - 129,035,343 (-)NCBIMGSCv36mm8
CeleraX116,456,789 - 116,562,258 (-)NCBICelera
Cytogenetic MapXE3NCBI
cM MapX55.21NCBI
Pcdh19
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X101,061,002 - 101,166,777 (-)NCBIGRCr8
mRatBN7.2X96,767,686 - 96,873,477 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX96,771,947 - 96,873,524 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX98,446,113 - 98,545,930 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X101,955,888 - 102,055,706 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X99,460,081 - 99,559,883 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X104,387,346 - 104,493,914 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX104,391,607 - 104,493,757 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X104,230,786 - 104,335,207 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X121,108,772 - 121,209,099 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX97,823,518 - 97,922,991 (-)NCBICelera
Cytogenetic MapXq32NCBI
Pcdh19
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555036,434,047 - 6,567,253 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555036,428,894 - 6,567,253 (-)NCBIChiLan1.0ChiLan1.0
PCDH19
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X99,901,156 - 100,018,434 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X99,904,761 - 100,022,039 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X89,504,404 - 89,622,354 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X99,643,595 - 99,759,631 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX99,643,595 - 99,759,631 (-)Ensemblpanpan1.1panPan2
PCDH19
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X74,179,609 - 74,319,138 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX74,184,772 - 74,317,391 (-)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0X75,589,131 - 75,726,986 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX75,594,295 - 75,727,552 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X73,151,338 - 73,289,267 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X74,820,721 - 74,958,753 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X74,582,488 - 74,720,481 (-)NCBIUU_Cfam_GSD_1.0
Pcdh19
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X63,884,867 - 63,984,266 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365845,568,728 - 5,668,116 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365845,568,740 - 5,668,095 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PCDH19
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX82,036,199 - 82,151,652 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X82,031,365 - 82,153,159 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X89,912,438 - 89,992,739 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PCDH19
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X88,613,546 - 88,730,740 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX88,616,743 - 88,730,519 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606513,547,408 - 13,659,207 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004872592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004872593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004872595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004872596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004872597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021250458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01101961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01101962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01101963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01101964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01101965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01101966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01101967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01101968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01101969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01101970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GEBF01001676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH172447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000003175   ⟹   ENSHGLP00000003120
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046249022,354,856 - 2,497,378 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000003176   ⟹   ENSHGLP00000003121
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046249022,355,102 - 2,502,527 (+)Ensembl
RefSeq Acc Id: XM_004872592   ⟹   XP_004872649
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046249022,354,109 - 2,502,478 (+)NCBI
RefSeq Acc Id: XM_004872593   ⟹   XP_004872650
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046249022,354,109 - 2,502,478 (+)NCBI
RefSeq Acc Id: XM_004872595   ⟹   XP_004872652
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046249022,354,109 - 2,502,478 (+)NCBI
RefSeq Acc Id: XM_004872596   ⟹   XP_004872653
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046249022,354,110 - 2,502,478 (+)NCBI
RefSeq Acc Id: XM_004872597   ⟹   XP_004872654
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046249022,354,110 - 2,502,478 (+)NCBI
RefSeq Acc Id: XM_021250458   ⟹   XP_021106117
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046249022,354,109 - 2,502,478 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_004872649   ⟸   XM_004872592
- Peptide Label: isoform X1
- UniProtKB: G5BYG7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004872652   ⟸   XM_004872595
- Peptide Label: isoform X2
- UniProtKB: A0A0P6JK49 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004872650   ⟸   XM_004872593
- Peptide Label: isoform X1
- UniProtKB: G5BYG7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021106117   ⟸   XM_021250458
- Peptide Label: isoform X1
- UniProtKB: G5BYG7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004872653   ⟸   XM_004872596
- Peptide Label: isoform X3
RefSeq Acc Id: XP_004872654   ⟸   XM_004872597
- Peptide Label: isoform X4
RefSeq Acc Id: ENSHGLP00000003121   ⟸   ENSHGLT00000003176
RefSeq Acc Id: ENSHGLP00000003120   ⟸   ENSHGLT00000003175


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000002330 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLG00100003181 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000003175 ENTREZGENE
  ENSHGLT00000003176 ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLT00100004249 UniProtKB/TrEMBL
Gene3D-CATH Cadherins UniProtKB/TrEMBL
InterPro Cadherin-like_dom UniProtKB/TrEMBL
  Cadherin-like_sf UniProtKB/TrEMBL
  Cadherin_CS UniProtKB/TrEMBL
  Cadherin_N UniProtKB/TrEMBL
KEGG Report hgl:101722572 UniProtKB/TrEMBL
NCBI Gene Pcdh19 ENTREZGENE
PANTHER CADHERIN-87A UniProtKB/TrEMBL
  PTHR24028:SF40 UniProtKB/TrEMBL
Pfam Cadherin UniProtKB/TrEMBL
  Cadherin_2 UniProtKB/TrEMBL
PRINTS CADHERIN UniProtKB/TrEMBL
PROSITE CADHERIN_1 UniProtKB/TrEMBL
  CADHERIN_2 UniProtKB/TrEMBL
SMART SM00112 UniProtKB/TrEMBL
Superfamily-SCOP SSF49313 UniProtKB/TrEMBL
UniProt A0A0P6JK49 ENTREZGENE, UniProtKB/TrEMBL
  G5BYG7 ENTREZGENE, UniProtKB/TrEMBL