SYTL3 (synaptotagmin like 3) - Rat Genome Database

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Gene: SYTL3 (synaptotagmin like 3) Homo sapiens
Analyze
Symbol: SYTL3
Name: synaptotagmin like 3
RGD ID: 1352944
HGNC Page HGNC:15587
Description: Predicted to enable neurexin family protein binding activity. Predicted to be involved in exocytosis. Predicted to be located in endomembrane system and membrane. Predicted to be active in exocytic vesicle and plasma membrane.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: exophilin-6; MGC105130; MGC118883; MGC118884; MGC118885; SLP3; synaptotagmin-like 3; synaptotagmin-like protein 3
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386158,644,936 - 158,764,871 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6158,650,014 - 158,764,876 (+)EnsemblGRCh38hg38GRCh38
GRCh376159,071,086 - 159,185,903 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366158,991,034 - 159,105,889 (+)NCBINCBI36Build 36hg18NCBI36
Build 346159,041,508 - 159,156,311NCBI
Celera6159,719,041 - 159,833,917 (+)NCBICelera
Cytogenetic Map6q25.3NCBI
HuRef6156,541,943 - 156,656,442 (+)NCBIHuRef
CHM1_16159,333,606 - 159,448,611 (+)NCBICHM1_1
T2T-CHM13v2.06159,886,606 - 160,010,070 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11243866   PMID:11327731   PMID:11773082   PMID:12049610   PMID:12477932   PMID:12590134   PMID:14702039   PMID:16344560   PMID:19913121   PMID:20628086   PMID:21873635   PMID:22308290  
PMID:25940347   PMID:28514442   PMID:32296183   PMID:33657377   PMID:33961781  


Genomics

Comparative Map Data
SYTL3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386158,644,936 - 158,764,871 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6158,650,014 - 158,764,876 (+)EnsemblGRCh38hg38GRCh38
GRCh376159,071,086 - 159,185,903 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366158,991,034 - 159,105,889 (+)NCBINCBI36Build 36hg18NCBI36
Build 346159,041,508 - 159,156,311NCBI
Celera6159,719,041 - 159,833,917 (+)NCBICelera
Cytogenetic Map6q25.3NCBI
HuRef6156,541,943 - 156,656,442 (+)NCBIHuRef
CHM1_16159,333,606 - 159,448,611 (+)NCBICHM1_1
T2T-CHM13v2.06159,886,606 - 160,010,070 (+)NCBIT2T-CHM13v2.0
Sytl3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39176,925,633 - 7,005,449 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl176,926,492 - 7,005,443 (+)EnsemblGRCm39 Ensembl
GRCm38176,658,133 - 6,738,070 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl176,659,093 - 6,738,044 (+)EnsemblGRCm38mm10GRCm38
MGSCv37176,877,960 - 6,942,393 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36176,523,269 - 6,587,494 (+)NCBIMGSCv36mm8
Celera1514,732,754 - 14,737,852 (-)NCBICelera
Cytogenetic Map17A1NCBI
cM Map174.33NCBI
Sytl3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8149,300,935 - 49,372,533 (+)NCBIGRCr8
mRatBN7.2146,896,308 - 46,967,461 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl146,911,217 - 46,967,460 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx147,460,176 - 47,516,406 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0153,447,437 - 53,503,677 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0147,535,610 - 47,591,852 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0147,216,988 - 47,287,372 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl147,231,093 - 47,287,371 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0148,520,061 - 48,591,365 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4141,121,373 - 41,177,695 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera142,598,861 - 42,655,031 (+)NCBICelera
Cytogenetic Map1q11NCBI
Sytl3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554393,741,185 - 3,813,670 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554393,740,044 - 3,825,954 (-)NCBIChiLan1.0ChiLan1.0
SYTL3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25178,751,597 - 178,868,789 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16176,655,495 - 176,774,134 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06156,537,572 - 156,655,272 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16161,552,602 - 161,669,609 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6161,559,559 - 161,669,609 (+)Ensemblpanpan1.1panPan2
SYTL3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1148,066,449 - 48,159,980 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl148,067,612 - 48,159,936 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha148,911,648 - 49,004,972 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0148,252,730 - 48,346,099 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl148,259,345 - 48,346,110 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1148,129,399 - 48,222,874 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0148,000,111 - 48,093,753 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0148,559,600 - 48,653,168 (+)NCBIUU_Cfam_GSD_1.0
Sytl3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946143,094,445 - 143,161,127 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648910,352,904 - 10,412,918 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648910,384,060 - 10,413,122 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYTL3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl18,453,283 - 8,546,530 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.118,452,822 - 8,546,637 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2110,432,694 - 10,498,575 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SYTL3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11386,242,087 - 86,342,084 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1386,242,109 - 86,341,818 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604058,598,161 - 58,720,449 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sytl3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624929874,471 - 953,246 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624929874,246 - 969,213 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SYTL3
44 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
NM_001242384.1(SYTL3):c.394+2829C>T single nucleotide variant Lung cancer [RCV000096641] Chr6:158685818 [GRCh38]
Chr6:159106850 [GRCh37]
Chr6:6q25.3
uncertain significance
GRCh38/hg38 6q24.1-27(chr6:141132990-169339571)x3 copy number gain See cases [RCV000050604] Chr6:141132990..169339571 [GRCh38]
Chr6:141454127..169739666 [GRCh37]
Chr6:141495820..169481591 [NCBI36]
Chr6:6q24.1-27
pathogenic
GRCh38/hg38 6q25.2-27(chr6:152376338-170583214)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051902]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051902]|See cases [RCV000051902] Chr6:152376338..170583214 [GRCh38]
Chr6:152697473..170892302 [GRCh37]
Chr6:152739166..170734227 [NCBI36]
Chr6:6q25.2-27
pathogenic
GRCh38/hg38 6q25.3(chr6:157827805-159726548)x3 copy number gain See cases [RCV000051903] Chr6:157827805..159726548 [GRCh38]
Chr6:158248837..160147580 [GRCh37]
Chr6:158168825..160067570 [NCBI36]
Chr6:6q25.3
pathogenic
GRCh38/hg38 6q25.3-27(chr6:158664768-170612001)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051904]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051904]|See cases [RCV000051904] Chr6:158664768..170612001 [GRCh38]
Chr6:159085800..170921089 [GRCh37]
Chr6:159005788..170763014 [NCBI36]
Chr6:6q25.3-27
pathogenic
GRCh38/hg38 6q25.2-27(chr6:154118058-170602152)x1 copy number loss See cases [RCV000052207] Chr6:154118058..170602152 [GRCh38]
Chr6:154439193..170911240 [GRCh37]
Chr6:154480885..170753165 [NCBI36]
Chr6:6q25.2-27
pathogenic
GRCh38/hg38 6q25.2-25.3(chr6:154178964-159020369)x1 copy number loss See cases [RCV000134896] Chr6:154178964..159020369 [GRCh38]
Chr6:154500098..159441401 [GRCh37]
Chr6:154541790..159361389 [NCBI36]
Chr6:6q25.2-25.3
likely pathogenic
GRCh38/hg38 6q25.2-27(chr6:154539655-170714507)x1 copy number loss See cases [RCV000137381] Chr6:154539655..170714507 [GRCh38]
Chr6:154860789..171023595 [GRCh37]
Chr6:154902481..170865520 [NCBI36]
Chr6:6q25.2-27
pathogenic
GRCh38/hg38 6q25.3(chr6:158172635-158745586)x3 copy number gain See cases [RCV000138111] Chr6:158172635..158745586 [GRCh38]
Chr6:158593667..159166618 [GRCh37]
Chr6:158513655..159086606 [NCBI36]
Chr6:6q25.3
uncertain significance
GRCh38/hg38 6q25.3-26(chr6:155378049-163133499)x1 copy number loss See cases [RCV000137831] Chr6:155378049..163133499 [GRCh38]
Chr6:155699183..163554531 [GRCh37]
Chr6:155740875..163474521 [NCBI36]
Chr6:6q25.3-26
pathogenic
GRCh38/hg38 6q25.1-25.3(chr6:150381239-159553952)x1 copy number loss See cases [RCV000139578] Chr6:150381239..159553952 [GRCh38]
Chr6:150702375..159974984 [GRCh37]
Chr6:150744068..159894974 [NCBI36]
Chr6:6q25.1-25.3
pathogenic
GRCh38/hg38 6q25.2-27(chr6:152793402-170610394)x1 copy number loss See cases [RCV000141880] Chr6:152793402..170610394 [GRCh38]
Chr6:153114537..170919482 [GRCh37]
Chr6:153156230..170761407 [NCBI36]
Chr6:6q25.2-27
pathogenic
GRCh38/hg38 6q25.3(chr6:158174555-158762476)x3 copy number gain See cases [RCV000141740] Chr6:158174555..158762476 [GRCh38]
Chr6:158595587..159183508 [GRCh37]
Chr6:158515575..159103496 [NCBI36]
Chr6:6q25.3
likely benign|uncertain significance
GRCh38/hg38 6q25.2-27(chr6:152376338-170612001)x3 copy number gain See cases [RCV000142594] Chr6:152376338..170612001 [GRCh38]
Chr6:152697473..170921089 [GRCh37]
Chr6:152739166..170763014 [NCBI36]
Chr6:6q25.2-27
pathogenic
GRCh38/hg38 6q23.2-27(chr6:133537271-165875545)x3 copy number gain See cases [RCV000143444] Chr6:133537271..165875545 [GRCh38]
Chr6:133858409..166289033 [GRCh37]
Chr6:133900102..166209023 [NCBI36]
Chr6:6q23.2-27
pathogenic
GRCh38/hg38 6q25.3-26(chr6:158585724-160899783)x3 copy number gain See cases [RCV000143618] Chr6:158585724..160899783 [GRCh38]
Chr6:159006756..161320815 [GRCh37]
Chr6:158926744..161240805 [NCBI36]
Chr6:6q25.3-26
uncertain significance
GRCh37/hg19 6q25.1-27(chr6:151214792-170892243)x3 copy number gain See cases [RCV000449011] Chr6:151214792..170892243 [GRCh37]
Chr6:6q25.1-27
pathogenic
GRCh37/hg19 6q25.3(chr6:158392800-159229197)x3 copy number gain See cases [RCV000447581] Chr6:158392800..159229197 [GRCh37]
Chr6:6q25.3
uncertain significance
GRCh37/hg19 6q25.3(chr6:155525920-159889169)x1 copy number loss See cases [RCV000447692] Chr6:155525920..159889169 [GRCh37]
Chr6:6q25.3
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:156975-170919482)x3 copy number gain See cases [RCV000512067] Chr6:156975..170919482 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:156975-170919482) copy number gain See cases [RCV000510595] Chr6:156975..170919482 [GRCh37]
Chr6:6p25.3-q27
pathogenic
NM_001242394.2(SYTL3):c.1628C>G (p.Ala543Gly) single nucleotide variant not specified [RCV004307839] Chr6:158763414 [GRCh38]
Chr6:159184446 [GRCh37]
Chr6:6q25.3
uncertain significance
NM_001242394.2(SYTL3):c.701C>T (p.Ala234Val) single nucleotide variant not specified [RCV004295104] Chr6:158718192 [GRCh38]
Chr6:159139224 [GRCh37]
Chr6:6q25.3
uncertain significance
NM_001242394.2(SYTL3):c.874G>A (p.Asp292Asn) single nucleotide variant not specified [RCV004321107] Chr6:158745498 [GRCh38]
Chr6:159166530 [GRCh37]
Chr6:6q25.3
likely benign
46,XX,der(6)(q25.1,q28)dn.seq[GRCh37/hg19]der(6)(6pter->6q25.2(+)(154768571)::q25.2(+)(154778901),q25.2(+)154778992::q25.2(-)(154774048),q25.2(-)(154768571)::q25.2(-)(154768571),q25.1(-)(~151443183-151443483))dn complex Coffin-Siris syndrome 1 [RCV000714957] Chr6:151443333..171115067 [GRCh37]
Chr6:6q25.1-27
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:60107-171054786)x3 copy number gain not provided [RCV000745400] Chr6:60107..171054786 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:165632-170919470)x3 copy number gain not provided [RCV000745404] Chr6:165632..170919470 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:108666-170980171)x3 copy number gain not provided [RCV000745403] Chr6:108666..170980171 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6q25.1-27(chr6:150284435-170919470)x3 copy number gain not provided [RCV000746100] Chr6:150284435..170919470 [GRCh37]
Chr6:6q25.1-27
pathogenic
GRCh37/hg19 6q25.3-27(chr6:159155998-171054786)x3 copy number gain not provided [RCV000746132] Chr6:159155998..171054786 [GRCh37]
Chr6:6q25.3-27
pathogenic
GRCh37/hg19 6q25.3-27(chr6:159006336-170713678)x3 copy number gain not provided [RCV003312672] Chr6:159006336..170713678 [GRCh37]
Chr6:6q25.3-27
uncertain significance
GRCh37/hg19 6q25.3(chr6:157262571-160992289)x3 copy number gain not provided [RCV000848057] Chr6:157262571..160992289 [GRCh37]
Chr6:6q25.3
uncertain significance
GRCh37/hg19 6q24.3-25.3(chr6:148195086-160127254)x3 copy number gain not provided [RCV000846496] Chr6:148195086..160127254 [GRCh37]
Chr6:6q24.3-25.3
pathogenic
GRCh37/hg19 6q25.3(chr6:158392800-159229197) copy number gain not specified [RCV002053649] Chr6:158392800..159229197 [GRCh37]
Chr6:6q25.3
uncertain significance
GRCh37/hg19 6q25.3(chr6:155525920-159889169) copy number loss not specified [RCV002053642] Chr6:155525920..159889169 [GRCh37]
Chr6:6q25.3
pathogenic
GRCh37/hg19 6q25.2-26(chr6:153207930-164322346) copy number loss not specified [RCV002053640] Chr6:153207930..164322346 [GRCh37]
Chr6:6q25.2-26
pathogenic
NC_000006.11:g.(?_158532398)_(160114199_?)dup duplication Primary ciliary dyskinesia 32 [RCV001934131] Chr6:158532398..160114199 [GRCh37]
Chr6:6q25.3
uncertain significance
NC_000006.11:g.(?_158532398)_(162868359_?)del deletion 3-methylglutaconic aciduria with deafness, encephalopathy, and Leigh-like syndrome [RCV003122912]|not provided [RCV003122911] Chr6:158532398..162868359 [GRCh37]
Chr6:6q25.3-26
pathogenic|no classifications from unflagged records
GRCh37/hg19 6q25.3-27(chr6:157318401-165233548)x1 copy number loss See cases [RCV002287557] Chr6:157318401..165233548 [GRCh37]
Chr6:6q25.3-27
pathogenic
GRCh37/hg19 6q25.3-27(chr6:159121459-170919482) copy number loss Hydrocephalus [RCV002280751] Chr6:159121459..170919482 [GRCh37]
Chr6:6q25.3-27
pathogenic
NM_001242394.2(SYTL3):c.1169G>A (p.Arg390Gln) single nucleotide variant not specified [RCV004142044] Chr6:158757242 [GRCh38]
Chr6:159178274 [GRCh37]
Chr6:6q25.3
uncertain significance
NM_001242394.2(SYTL3):c.191C>T (p.Ala64Val) single nucleotide variant not specified [RCV004078982] Chr6:158665475 [GRCh38]
Chr6:159086507 [GRCh37]
Chr6:6q25.3
uncertain significance
NM_001242394.2(SYTL3):c.772T>C (p.Cys258Arg) single nucleotide variant not specified [RCV004162433] Chr6:158725554 [GRCh38]
Chr6:159146586 [GRCh37]
Chr6:6q25.3
likely benign
NM_001242394.2(SYTL3):c.20T>A (p.Leu7Gln) single nucleotide variant not specified [RCV004230233] Chr6:158663288 [GRCh38]
Chr6:159084320 [GRCh37]
Chr6:6q25.3
uncertain significance
NM_001242394.2(SYTL3):c.845G>T (p.Gly282Val) single nucleotide variant not specified [RCV004089213] Chr6:158725627 [GRCh38]
Chr6:159146659 [GRCh37]
Chr6:6q25.3
uncertain significance
NM_001242394.2(SYTL3):c.1670A>C (p.Gln557Pro) single nucleotide variant not specified [RCV004206427] Chr6:158763456 [GRCh38]
Chr6:159184488 [GRCh37]
Chr6:6q25.3
uncertain significance
NM_001242394.2(SYTL3):c.1384C>T (p.Arg462Trp) single nucleotide variant not specified [RCV004245216] Chr6:158760715 [GRCh38]
Chr6:159181747 [GRCh37]
Chr6:6q25.3
uncertain significance
NM_001242394.2(SYTL3):c.1330G>A (p.Val444Ile) single nucleotide variant not specified [RCV004109203] Chr6:158760661 [GRCh38]
Chr6:159181693 [GRCh37]
Chr6:6q25.3
uncertain significance
NM_001242394.2(SYTL3):c.1660G>T (p.Val554Phe) single nucleotide variant not specified [RCV004121198] Chr6:158763446 [GRCh38]
Chr6:159184478 [GRCh37]
Chr6:6q25.3
uncertain significance
NM_001242394.2(SYTL3):c.257G>A (p.Arg86His) single nucleotide variant not specified [RCV004081410] Chr6:158665541 [GRCh38]
Chr6:159086573 [GRCh37]
Chr6:6q25.3
uncertain significance
NM_001242394.2(SYTL3):c.322G>C (p.Glu108Gln) single nucleotide variant not specified [RCV004097414] Chr6:158665606 [GRCh38]
Chr6:159086638 [GRCh37]
Chr6:6q25.3
uncertain significance
NM_001242394.2(SYTL3):c.470C>T (p.Thr157Ile) single nucleotide variant not specified [RCV004275783] Chr6:158708345 [GRCh38]
Chr6:159129377 [GRCh37]
Chr6:6q25.3
uncertain significance
NM_001242394.2(SYTL3):c.1778A>C (p.Gln593Pro) single nucleotide variant not specified [RCV004252652] Chr6:158764549 [GRCh38]
Chr6:159185581 [GRCh37]
Chr6:6q25.3
uncertain significance
NM_001242394.2(SYTL3):c.941T>C (p.Ile314Thr) single nucleotide variant not specified [RCV004344228] Chr6:158745565 [GRCh38]
Chr6:159166597 [GRCh37]
Chr6:6q25.3
uncertain significance
NM_001242394.2(SYTL3):c.611A>G (p.Gln204Arg) single nucleotide variant not specified [RCV004352526] Chr6:158718102 [GRCh38]
Chr6:159139134 [GRCh37]
Chr6:6q25.3
uncertain significance
NM_001242394.2(SYTL3):c.266C>T (p.Ala89Val) single nucleotide variant not specified [RCV004344787] Chr6:158665550 [GRCh38]
Chr6:159086582 [GRCh37]
Chr6:6q25.3
uncertain significance
NM_001242394.2(SYTL3):c.1377C>T (p.Leu459=) single nucleotide variant not provided [RCV003429024] Chr6:158760708 [GRCh38]
Chr6:159181740 [GRCh37]
Chr6:6q25.3
likely benign
GRCh37/hg19 6q25.2-27(chr6:152853218-170914297)x1 copy number loss See cases [RCV004442824] Chr6:152853218..170914297 [GRCh37]
Chr6:6q25.2-27
pathogenic
NC_000006.12:g.(?_150381239)_(159553952_?)del deletion Chromosome 6q24-q25 deletion syndrome [RCV003884000] Chr6:150381239..159553952 [GRCh38]
Chr6:6q25.1-25.3
pathogenic
NM_001242394.2(SYTL3):c.821C>T (p.Ala274Val) single nucleotide variant not specified [RCV004466019] Chr6:158725603 [GRCh38]
Chr6:159146635 [GRCh37]
Chr6:6q25.3
uncertain significance
NM_001242394.2(SYTL3):c.1477C>T (p.Pro493Ser) single nucleotide variant not specified [RCV004466013] Chr6:158762138 [GRCh38]
Chr6:159183170 [GRCh37]
Chr6:6q25.3
uncertain significance
NM_001242394.2(SYTL3):c.200A>G (p.Gln67Arg) single nucleotide variant not specified [RCV004466015] Chr6:158665484 [GRCh38]
Chr6:159086516 [GRCh37]
Chr6:6q25.3
uncertain significance
NM_001242394.2(SYTL3):c.1589A>C (p.Gln530Pro) single nucleotide variant not specified [RCV004466014] Chr6:158763375 [GRCh38]
Chr6:159184407 [GRCh37]
Chr6:6q25.3
uncertain significance
NM_001242394.2(SYTL3):c.48G>C (p.Glu16Asp) single nucleotide variant not specified [RCV004466017] Chr6:158663316 [GRCh38]
Chr6:159084348 [GRCh37]
Chr6:6q25.3
uncertain significance
NM_001242394.2(SYTL3):c.1310C>T (p.Ala437Val) single nucleotide variant not specified [RCV004466012] Chr6:158760641 [GRCh38]
Chr6:159181673 [GRCh37]
Chr6:6q25.3
uncertain significance
NM_001242394.2(SYTL3):c.616G>A (p.Asp206Asn) single nucleotide variant not specified [RCV004466018] Chr6:158718107 [GRCh38]
Chr6:159139139 [GRCh37]
Chr6:6q25.3
uncertain significance
NM_001242394.2(SYTL3):c.950G>T (p.Cys317Phe) single nucleotide variant not specified [RCV004466020] Chr6:158745574 [GRCh38]
Chr6:159166606 [GRCh37]
Chr6:6q25.3
uncertain significance
NM_001242394.2(SYTL3):c.109C>T (p.Arg37Trp) single nucleotide variant not specified [RCV004466009] Chr6:158663377 [GRCh38]
Chr6:159084409 [GRCh37]
Chr6:6q25.3
uncertain significance
NM_001242394.2(SYTL3):c.1187T>C (p.Val396Ala) single nucleotide variant not specified [RCV004466010] Chr6:158757260 [GRCh38]
Chr6:159178292 [GRCh37]
Chr6:6q25.3
uncertain significance
NM_001242394.2(SYTL3):c.1286G>A (p.Arg429His) single nucleotide variant not specified [RCV004466011] Chr6:158757359 [GRCh38]
Chr6:159178391 [GRCh37]
Chr6:6q25.3
uncertain significance
NM_001242394.2(SYTL3):c.230G>A (p.Gly77Asp) single nucleotide variant not specified [RCV004466016] Chr6:158665514 [GRCh38]
Chr6:159086546 [GRCh37]
Chr6:6q25.3
uncertain significance
NM_001242394.2(SYTL3):c.1466C>T (p.Ala489Val) single nucleotide variant not specified [RCV004681883] Chr6:158762127 [GRCh38]
Chr6:159183159 [GRCh37]
Chr6:6q25.3
uncertain significance
NM_001242394.2(SYTL3):c.71G>A (p.Arg24Gln) single nucleotide variant not specified [RCV004681884] Chr6:158663339 [GRCh38]
Chr6:159084371 [GRCh37]
Chr6:6q25.3
uncertain significance
NM_001242394.2(SYTL3):c.1295C>T (p.Pro432Leu) single nucleotide variant not specified [RCV004670998] Chr6:158757368 [GRCh38]
Chr6:159178400 [GRCh37]
Chr6:6q25.3
uncertain significance
NM_001242394.2(SYTL3):c.275G>A (p.Arg92Gln) single nucleotide variant not specified [RCV004671003] Chr6:158665559 [GRCh38]
Chr6:159086591 [GRCh37]
Chr6:6q25.3
uncertain significance
NM_001242394.2(SYTL3):c.1690G>A (p.Asp564Asn) single nucleotide variant not specified [RCV004670999] Chr6:158763476 [GRCh38]
Chr6:159184508 [GRCh37]
Chr6:6q25.3
uncertain significance
NM_001242394.2(SYTL3):c.1321G>A (p.Glu441Lys) single nucleotide variant not specified [RCV004671000] Chr6:158760652 [GRCh38]
Chr6:159181684 [GRCh37]
Chr6:6q25.3
uncertain significance
NM_001242394.2(SYTL3):c.1668T>A (p.Asp556Glu) single nucleotide variant not specified [RCV004671001] Chr6:158763454 [GRCh38]
Chr6:159184486 [GRCh37]
Chr6:6q25.3
uncertain significance
NM_001242394.2(SYTL3):c.1669C>A (p.Gln557Lys) single nucleotide variant not specified [RCV004671002] Chr6:158763455 [GRCh38]
Chr6:159184487 [GRCh37]
Chr6:6q25.3
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:753
Count of miRNA genes:293
Interacting mature miRNAs:311
Transcripts:ENST00000297239, ENST00000360448, ENST00000367081, ENST00000469735
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
597446732GWAS1542806_Hlipoprotein A measurement QTL GWAS1542806 (human)5e-09lipoprotein A measurement6158647682158647683Human
597035684GWAS1131758_Hneuritic plaque measurement QTL GWAS1131758 (human)0.000004neuritic plaque measurement6158681417158681418Human
597606474GWAS1663334_Hbody weight gain QTL GWAS1663334 (human)2e-11body weight gainbody weight gain (CMO:0000420)6158694351158694352Human
1643404BMD3_HBone mineral density QTL 3 (human)2.420.0005Bone mineral density6157563614170805979Human
597196864GWAS1292938_Hmemory performance QTL GWAS1292938 (human)0.000009memory performance6158701790158701791Human
597094815GWAS1190889_Hlipoprotein A measurement QTL GWAS1190889 (human)2e-13lipoprotein A measurement6158684381158684382Human
597120876GWAS1216950_Hlipoprotein A measurement QTL GWAS1216950 (human)1e-11lipoprotein A measurement6158665558158665559Human
407092328GWAS741304_Hperipheral arterial disease QTL GWAS741304 (human)0.0000008peripheral arterial disease6158680261158680262Human
1643367BW323_HBody weight QTL 323 (human)2.420.0005Body fat amount6157563614170805979Human
596982954GWAS1102473_Hmemory performance QTL GWAS1102473 (human)0.000009memory performance6158701790158701791Human

Markers in Region
RH46204  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh376159,185,688 - 159,185,845UniSTSGRCh37
Build 366159,105,676 - 159,105,833RGDNCBI36
Celera6159,833,704 - 159,833,861RGD
Cytogenetic Map6q25.3UniSTS
HuRef6156,656,222 - 156,656,379UniSTS
GeneMap99-GB4 RH Map6619.63UniSTS
NCBI RH Map61624.4UniSTS
D6S1975  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh376159,102,771 - 159,102,965UniSTSGRCh37
Build 366159,022,759 - 159,022,953RGDNCBI36
Celera6159,750,773 - 159,750,967RGD
Cytogenetic Map6q25.3UniSTS
HuRef6156,573,586 - 156,573,780UniSTS
SHGC-2438  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh376159,102,771 - 159,102,847UniSTSGRCh37
Build 366159,022,759 - 159,022,835RGDNCBI36
Celera6159,750,773 - 159,750,849RGD
Cytogenetic Map6q25.3UniSTS
HuRef6156,573,586 - 156,573,662UniSTS
RH122273  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh376159,090,069 - 159,090,401UniSTSGRCh37
Build 366159,010,057 - 159,010,389RGDNCBI36
Celera6159,738,071 - 159,738,403RGD
Cytogenetic Map6q25.3UniSTS
HuRef6156,560,971 - 156,561,303UniSTS
TNG Radiation Hybrid Map679023.0UniSTS
SHGC-132381  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh376159,102,776 - 159,102,990UniSTSGRCh37
Build 366159,022,764 - 159,022,978RGDNCBI36
Celera6159,750,778 - 159,750,992RGD
Cytogenetic Map6q25.3UniSTS
HuRef6156,573,591 - 156,573,805UniSTS
TNG Radiation Hybrid Map679019.0UniSTS
SHGC-147444  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh376159,124,510 - 159,124,825UniSTSGRCh37
Build 366159,044,498 - 159,044,813RGDNCBI36
Celera6159,772,510 - 159,772,825RGD
Cytogenetic Map6q25.3UniSTS
HuRef6156,595,367 - 156,595,682UniSTS
TNG Radiation Hybrid Map679011.0UniSTS
D16S325  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map9q34.13UniSTS
Cytogenetic Map9q22.33UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map4q21.1UniSTS
Cytogenetic Map6q25.3UniSTS
Cytogenetic Map2q32.3UniSTS
Cytogenetic Map6q22UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map17q21.2-q21.3UniSTS
Cytogenetic Map13q14.3UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map2q33.3UniSTS
Cytogenetic Map20q13.32UniSTS
Cytogenetic Map1p21.2UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map12q13.2UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map12p13.32UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map8q22.3UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map1p13.1UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map4q25UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map7p22.2UniSTS
Cytogenetic Map7q33UniSTS
Cytogenetic Map1p31.3UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map6q13UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map10q11.2UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map3q13.32UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map6p22.3UniSTS
Cytogenetic Map12q22UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map3q22.1UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map6q25.2-q25.3UniSTS
Cytogenetic Map1p36.1UniSTS
Cytogenetic Map22q11.2UniSTS
Cytogenetic Map3q26.31UniSTS
Cytogenetic Map7p12.3UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map5p12UniSTS
Cytogenetic Map9q21.13UniSTS
Cytogenetic Map17q21.33UniSTS
Cytogenetic Map20p12.3-p11.21UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map2p13-p12UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map3q25.33UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map7p11.2UniSTS
Cytogenetic Map8q21.13UniSTS
Cytogenetic Map7q32.1UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map3p24.2UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic MapXp22.33UniSTS
Cytogenetic MapYp11.32UniSTS
Cytogenetic Map10q24.31UniSTS
Cytogenetic Map4q34.3UniSTS
Cytogenetic Map10p11.23UniSTS
Cytogenetic Map10p15.1UniSTS
Cytogenetic Map14q21.2UniSTS
Cytogenetic Map6p21.31UniSTS
Cytogenetic Map9p24.1-p23UniSTS
Cytogenetic Map15q15.3UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic Map5q32UniSTS
Cytogenetic Map10pter-q25.3UniSTS
Cytogenetic Map6q25.2-q27UniSTS
Cytogenetic Map15q26.3UniSTS
Cytogenetic Map15q14UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map11p11.2UniSTS
Cytogenetic Map17q21.32UniSTS
Cytogenetic Map11p15.5UniSTS
Cytogenetic Map7p15.3UniSTS
Cytogenetic Map7p21.1UniSTS
Cytogenetic Map17q23.2UniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic Map1p36.3-p34.3UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map4p15.2UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map2q24.3UniSTS
Cytogenetic Map1q25.2UniSTS
Cytogenetic Map6q27UniSTS
Cytogenetic Map12q14.3UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map15q11.2UniSTS
Cytogenetic Map6p21.33UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map2q12.2UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map3p26UniSTS
Cytogenetic MapXq28UniSTS
Cytogenetic Map3p14.3UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map10q21-q22UniSTS
Cytogenetic Map5q22UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map10q22.2UniSTS
Cytogenetic Map8p22UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map12q14.2UniSTS
Cytogenetic Map11q22.3UniSTS
Cytogenetic Map10q26.11UniSTS
Cytogenetic Map10q25.3UniSTS
Cytogenetic Map6q22.32UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map17p13.1UniSTS
Cytogenetic Map12q23.3UniSTS
Cytogenetic Map3q21UniSTS
Cytogenetic Map3q21.3UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map7q36UniSTS
Cytogenetic Map4q26UniSTS
Cytogenetic Map19qterUniSTS
Cytogenetic Map7p13-p12UniSTS
Cytogenetic Map2p22UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic Map19q13.4UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
1204 2433 2788 2246 4944 1724 2350 4 624 1949 465 2268 7291 6461 53 3710 1 851 1739 1615 173

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_029794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001009991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001242384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001242394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001242395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001318745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005267215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005267218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005267222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006715605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006715606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006715611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011536254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011536255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017011495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017011496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017011497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017011498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017011499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024446588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047419549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047419550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047419551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047419552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047419553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047419554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047419555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047419556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047419557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047419558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047419559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047419560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047419561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047419562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AI674404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK055750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK092729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK131092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK298712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK304191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL567177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL589931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC042966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC085612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC100828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC100829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC100830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC100831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB175440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DC394549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000297239   ⟹   ENSP00000297239
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6158,661,319 - 158,764,869 (+)Ensembl
Ensembl Acc Id: ENST00000360448   ⟹   ENSP00000353631
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6158,650,014 - 158,764,869 (+)Ensembl
Ensembl Acc Id: ENST00000367081   ⟹   ENSP00000356048
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6158,650,014 - 158,764,876 (+)Ensembl
Ensembl Acc Id: ENST00000469735
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6158,650,053 - 158,663,048 (+)Ensembl
Ensembl Acc Id: ENST00000611299   ⟹   ENSP00000483936
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl6158,650,054 - 158,764,871 (+)Ensembl
RefSeq Acc Id: NM_001009991   ⟹   NP_001009991
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386158,650,054 - 158,764,871 (+)NCBI
GRCh376159,065,931 - 159,185,908 (+)NCBI
Build 366158,991,034 - 159,105,889 (+)NCBI Archive
Celera6159,719,041 - 159,833,917 (+)RGD
HuRef6156,541,943 - 156,656,442 (+)ENTREZGENE
CHM1_16159,333,606 - 159,448,611 (+)NCBI
T2T-CHM13v2.06159,895,281 - 160,010,070 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001242384   ⟹   NP_001229313
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386158,650,054 - 158,764,871 (+)NCBI
GRCh376159,065,931 - 159,185,908 (+)NCBI
HuRef6156,541,943 - 156,656,442 (+)ENTREZGENE
CHM1_16159,333,606 - 159,448,611 (+)NCBI
T2T-CHM13v2.06159,895,281 - 160,010,070 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001242394   ⟹   NP_001229323
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386158,650,054 - 158,764,871 (+)NCBI
GRCh376159,065,931 - 159,185,908 (+)NCBI
HuRef6156,541,943 - 156,656,442 (+)ENTREZGENE
CHM1_16159,333,606 - 159,448,611 (+)NCBI
T2T-CHM13v2.06159,895,281 - 160,010,070 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001242395   ⟹   NP_001229324
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386158,650,054 - 158,764,871 (+)NCBI
GRCh376159,065,931 - 159,185,908 (+)NCBI
HuRef6156,541,943 - 156,656,442 (+)ENTREZGENE
CHM1_16159,333,606 - 159,448,611 (+)NCBI
T2T-CHM13v2.06159,895,281 - 160,010,070 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001318745   ⟹   NP_001305674
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386158,662,947 - 158,764,871 (+)NCBI
CHM1_16159,346,998 - 159,448,611 (+)NCBI
T2T-CHM13v2.06159,908,180 - 160,010,070 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005267222   ⟹   XP_005267279
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386158,708,322 - 158,764,871 (+)NCBI
GRCh376159,065,931 - 159,185,908 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006715606   ⟹   XP_006715669
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386158,644,936 - 158,764,871 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006715611   ⟹   XP_006715674
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386158,644,936 - 158,764,871 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011536254   ⟹   XP_011534556
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386158,644,936 - 158,764,871 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011536255   ⟹   XP_011534557
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386158,718,249 - 158,764,871 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017011496   ⟹   XP_016866985
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386158,663,301 - 158,764,871 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017011499   ⟹   XP_016866988
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386158,662,947 - 158,752,030 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047419549   ⟹   XP_047275505
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386158,650,054 - 158,764,871 (+)NCBI
RefSeq Acc Id: XM_047419550   ⟹   XP_047275506
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386158,650,054 - 158,764,871 (+)NCBI
RefSeq Acc Id: XM_047419551   ⟹   XP_047275507
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386158,650,054 - 158,764,871 (+)NCBI
RefSeq Acc Id: XM_047419552   ⟹   XP_047275508
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386158,644,936 - 158,764,871 (+)NCBI
RefSeq Acc Id: XM_047419553   ⟹   XP_047275509
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386158,650,054 - 158,764,871 (+)NCBI
RefSeq Acc Id: XM_047419554   ⟹   XP_047275510
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386158,650,054 - 158,764,871 (+)NCBI
RefSeq Acc Id: XM_047419555   ⟹   XP_047275511
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386158,650,054 - 158,764,871 (+)NCBI
RefSeq Acc Id: XM_047419556   ⟹   XP_047275512
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386158,644,936 - 158,764,871 (+)NCBI
RefSeq Acc Id: XM_047419557   ⟹   XP_047275513
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386158,644,936 - 158,764,871 (+)NCBI
RefSeq Acc Id: XM_047419558   ⟹   XP_047275514
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386158,650,054 - 158,764,871 (+)NCBI
RefSeq Acc Id: XM_047419559   ⟹   XP_047275515
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386158,704,408 - 158,764,871 (+)NCBI
RefSeq Acc Id: XM_047419560   ⟹   XP_047275516
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386158,644,936 - 158,764,871 (+)NCBI
RefSeq Acc Id: XM_047419561   ⟹   XP_047275517
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386158,662,947 - 158,764,871 (+)NCBI
RefSeq Acc Id: XM_047419562   ⟹   XP_047275518
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386158,665,510 - 158,764,871 (+)NCBI
RefSeq Acc Id: XM_054356793   ⟹   XP_054212768
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.06159,890,081 - 160,010,070 (+)NCBI
RefSeq Acc Id: XM_054356794   ⟹   XP_054212769
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.06159,890,081 - 160,010,070 (+)NCBI
RefSeq Acc Id: XM_054356795   ⟹   XP_054212770
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.06159,895,281 - 160,010,070 (+)NCBI
RefSeq Acc Id: XM_054356796   ⟹   XP_054212771
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.06159,895,281 - 160,010,070 (+)NCBI
RefSeq Acc Id: XM_054356797   ⟹   XP_054212772
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.06159,890,081 - 160,010,070 (+)NCBI
RefSeq Acc Id: XM_054356798   ⟹   XP_054212773
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.06159,890,081 - 160,010,070 (+)NCBI
RefSeq Acc Id: XM_054356799   ⟹   XP_054212774
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.06159,895,281 - 160,010,070 (+)NCBI
RefSeq Acc Id: XM_054356800   ⟹   XP_054212775
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.06159,890,081 - 160,010,070 (+)NCBI
RefSeq Acc Id: XM_054356801   ⟹   XP_054212776
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.06159,886,606 - 160,010,070 (+)NCBI
RefSeq Acc Id: XM_054356802   ⟹   XP_054212777
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.06159,895,281 - 160,010,070 (+)NCBI
RefSeq Acc Id: XM_054356803   ⟹   XP_054212778
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.06159,890,081 - 160,010,070 (+)NCBI
RefSeq Acc Id: XM_054356804   ⟹   XP_054212779
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.06159,886,606 - 160,010,070 (+)NCBI
RefSeq Acc Id: XM_054356805   ⟹   XP_054212780
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.06159,906,637 - 160,010,070 (+)NCBI
RefSeq Acc Id: XM_054356806   ⟹   XP_054212781
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.06159,890,081 - 160,010,070 (+)NCBI
RefSeq Acc Id: XM_054356807   ⟹   XP_054212782
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.06159,890,081 - 160,010,070 (+)NCBI
RefSeq Acc Id: XM_054356808   ⟹   XP_054212783
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.06159,895,281 - 160,010,070 (+)NCBI
RefSeq Acc Id: XM_054356809   ⟹   XP_054212784
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.06159,890,081 - 160,010,070 (+)NCBI
RefSeq Acc Id: XM_054356810   ⟹   XP_054212785
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.06159,895,281 - 160,010,070 (+)NCBI
RefSeq Acc Id: XM_054356811   ⟹   XP_054212786
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.06159,890,081 - 160,010,070 (+)NCBI
RefSeq Acc Id: XM_054356812   ⟹   XP_054212787
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.06159,890,081 - 160,010,070 (+)NCBI
RefSeq Acc Id: XM_054356813   ⟹   XP_054212788
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.06159,895,281 - 160,010,070 (+)NCBI
RefSeq Acc Id: XM_054356814   ⟹   XP_054212789
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.06159,886,606 - 160,010,070 (+)NCBI
RefSeq Acc Id: XM_054356815   ⟹   XP_054212790
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.06159,963,416 - 160,010,070 (+)NCBI
RefSeq Acc Id: XM_054356816   ⟹   XP_054212791
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.06159,949,815 - 160,010,070 (+)NCBI
RefSeq Acc Id: XM_054356817   ⟹   XP_054212792
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.06159,953,462 - 160,010,070 (+)NCBI
RefSeq Acc Id: XM_054356818   ⟹   XP_054212793
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.06159,890,086 - 160,010,070 (+)NCBI
RefSeq Acc Id: XM_054356819   ⟹   XP_054212794
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.06159,890,086 - 160,010,070 (+)NCBI
RefSeq Acc Id: XM_054356820   ⟹   XP_054212795
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.06159,908,180 - 160,010,070 (+)NCBI
RefSeq Acc Id: XM_054356821   ⟹   XP_054212796
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.06159,906,641 - 160,010,070 (+)NCBI
RefSeq Acc Id: XM_054356822   ⟹   XP_054212797
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.06159,906,641 - 160,010,070 (+)NCBI
RefSeq Acc Id: XM_054356823   ⟹   XP_054212798
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.06159,908,534 - 160,010,070 (+)NCBI
RefSeq Acc Id: XM_054356824   ⟹   XP_054212799
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.06159,890,068 - 159,997,220 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001009991 (Get FASTA)   NCBI Sequence Viewer  
  NP_001229313 (Get FASTA)   NCBI Sequence Viewer  
  NP_001229323 (Get FASTA)   NCBI Sequence Viewer  
  NP_001229324 (Get FASTA)   NCBI Sequence Viewer  
  NP_001305674 (Get FASTA)   NCBI Sequence Viewer  
  XP_005267279 (Get FASTA)   NCBI Sequence Viewer  
  XP_006715669 (Get FASTA)   NCBI Sequence Viewer  
  XP_006715674 (Get FASTA)   NCBI Sequence Viewer  
  XP_011534556 (Get FASTA)   NCBI Sequence Viewer  
  XP_011534557 (Get FASTA)   NCBI Sequence Viewer  
  XP_016866985 (Get FASTA)   NCBI Sequence Viewer  
  XP_016866988 (Get FASTA)   NCBI Sequence Viewer  
  XP_047275505 (Get FASTA)   NCBI Sequence Viewer  
  XP_047275506 (Get FASTA)   NCBI Sequence Viewer  
  XP_047275507 (Get FASTA)   NCBI Sequence Viewer  
  XP_047275508 (Get FASTA)   NCBI Sequence Viewer  
  XP_047275509 (Get FASTA)   NCBI Sequence Viewer  
  XP_047275510 (Get FASTA)   NCBI Sequence Viewer  
  XP_047275511 (Get FASTA)   NCBI Sequence Viewer  
  XP_047275512 (Get FASTA)   NCBI Sequence Viewer  
  XP_047275513 (Get FASTA)   NCBI Sequence Viewer  
  XP_047275514 (Get FASTA)   NCBI Sequence Viewer  
  XP_047275515 (Get FASTA)   NCBI Sequence Viewer  
  XP_047275516 (Get FASTA)   NCBI Sequence Viewer  
  XP_047275517 (Get FASTA)   NCBI Sequence Viewer  
  XP_047275518 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212768 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212769 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212770 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212771 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212772 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212773 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212774 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212775 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212776 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212777 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212778 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212779 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212780 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212781 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212782 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212783 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212784 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212785 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212786 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212787 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212788 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212789 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212790 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212791 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212792 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212793 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212794 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212795 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212796 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212797 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212798 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212799 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH85612 (Get FASTA)   NCBI Sequence Viewer  
  AAI00831 (Get FASTA)   NCBI Sequence Viewer  
  AAI00832 (Get FASTA)   NCBI Sequence Viewer  
  BAC85142 (Get FASTA)   NCBI Sequence Viewer  
  BAG60868 (Get FASTA)   NCBI Sequence Viewer  
  BAG65071 (Get FASTA)   NCBI Sequence Viewer  
  EAW47648 (Get FASTA)   NCBI Sequence Viewer  
  EAW47649 (Get FASTA)   NCBI Sequence Viewer  
  EAW47650 (Get FASTA)   NCBI Sequence Viewer  
  EAW47651 (Get FASTA)   NCBI Sequence Viewer  
  EAW47652 (Get FASTA)   NCBI Sequence Viewer  
  EAW47653 (Get FASTA)   NCBI Sequence Viewer  
  EAW47654 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000353631
  ENSP00000353631.4
  ENSP00000356048
  ENSP00000356048.4
  ENSP00000483936
  ENSP00000483936.1
GenBank Protein Q4VX76 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001009991   ⟸   NM_001009991
- Peptide Label: isoform 2
- UniProtKB: B4DQA6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001229323   ⟸   NM_001242394
- Peptide Label: isoform 1
- UniProtKB: Q4VX76 (UniProtKB/Swiss-Prot),   Q496J6 (UniProtKB/Swiss-Prot),   Q496J4 (UniProtKB/Swiss-Prot),   Q5U3B9 (UniProtKB/Swiss-Prot),   B4DQA6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001229324   ⟸   NM_001242395
- Peptide Label: isoform 2
- UniProtKB: B4DQA6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001229313   ⟸   NM_001242384
- Peptide Label: isoform 1
- UniProtKB: Q4VX76 (UniProtKB/Swiss-Prot),   Q496J6 (UniProtKB/Swiss-Prot),   Q496J4 (UniProtKB/Swiss-Prot),   Q5U3B9 (UniProtKB/Swiss-Prot),   B4DQA6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005267279   ⟸   XM_005267222
- Peptide Label: isoform X4
- UniProtKB: B4E2A9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006715669   ⟸   XM_006715606
- Peptide Label: isoform X1
- UniProtKB: Q4VX76 (UniProtKB/Swiss-Prot),   Q496J6 (UniProtKB/Swiss-Prot),   Q496J4 (UniProtKB/Swiss-Prot),   Q5U3B9 (UniProtKB/Swiss-Prot),   B4DQA6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006715674   ⟸   XM_006715611
- Peptide Label: isoform X4
- UniProtKB: B4E2A9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011534556   ⟸   XM_011536254
- Peptide Label: isoform X1
- UniProtKB: Q4VX76 (UniProtKB/Swiss-Prot),   Q496J6 (UniProtKB/Swiss-Prot),   Q496J4 (UniProtKB/Swiss-Prot),   Q5U3B9 (UniProtKB/Swiss-Prot),   B4DQA6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011534557   ⟸   XM_011536255
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: NP_001305674   ⟸   NM_001318745
- Peptide Label: isoform 3
- UniProtKB: B4E2A9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016866985   ⟸   XM_017011496
- Peptide Label: isoform X4
- UniProtKB: B4E2A9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016866988   ⟸   XM_017011499
- Peptide Label: isoform X6
- Sequence:
Ensembl Acc Id: ENSP00000353631   ⟸   ENST00000360448
Ensembl Acc Id: ENSP00000483936   ⟸   ENST00000611299
Ensembl Acc Id: ENSP00000297239   ⟸   ENST00000297239
Ensembl Acc Id: ENSP00000356048   ⟸   ENST00000367081
RefSeq Acc Id: XP_047275512   ⟸   XM_047419556
- Peptide Label: isoform X2
- UniProtKB: B4DQA6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047275516   ⟸   XM_047419560
- Peptide Label: isoform X4
- UniProtKB: B4E2A9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047275508   ⟸   XM_047419552
- Peptide Label: isoform X1
- UniProtKB: Q4VX76 (UniProtKB/Swiss-Prot),   Q496J6 (UniProtKB/Swiss-Prot),   Q496J4 (UniProtKB/Swiss-Prot),   Q5U3B9 (UniProtKB/Swiss-Prot),   B4DQA6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047275513   ⟸   XM_047419557
- Peptide Label: isoform X2
- UniProtKB: B4DQA6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047275509   ⟸   XM_047419553
- Peptide Label: isoform X1
- UniProtKB: Q4VX76 (UniProtKB/Swiss-Prot),   Q496J6 (UniProtKB/Swiss-Prot),   Q496J4 (UniProtKB/Swiss-Prot),   Q5U3B9 (UniProtKB/Swiss-Prot),   B4DQA6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047275506   ⟸   XM_047419550
- Peptide Label: isoform X1
- UniProtKB: Q4VX76 (UniProtKB/Swiss-Prot),   Q496J6 (UniProtKB/Swiss-Prot),   Q496J4 (UniProtKB/Swiss-Prot),   Q5U3B9 (UniProtKB/Swiss-Prot),   B4DQA6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047275510   ⟸   XM_047419554
- Peptide Label: isoform X2
- UniProtKB: B4DQA6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047275505   ⟸   XM_047419549
- Peptide Label: isoform X1
- UniProtKB: Q4VX76 (UniProtKB/Swiss-Prot),   Q496J6 (UniProtKB/Swiss-Prot),   Q496J4 (UniProtKB/Swiss-Prot),   Q5U3B9 (UniProtKB/Swiss-Prot),   B4DQA6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047275511   ⟸   XM_047419555
- Peptide Label: isoform X2
- UniProtKB: B4DQA6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047275514   ⟸   XM_047419558
- Peptide Label: isoform X2
- UniProtKB: B4DQA6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047275507   ⟸   XM_047419551
- Peptide Label: isoform X1
- UniProtKB: Q4VX76 (UniProtKB/Swiss-Prot),   Q496J6 (UniProtKB/Swiss-Prot),   Q496J4 (UniProtKB/Swiss-Prot),   Q5U3B9 (UniProtKB/Swiss-Prot),   B4DQA6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047275517   ⟸   XM_047419561
- Peptide Label: isoform X4
- UniProtKB: B4E2A9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047275518   ⟸   XM_047419562
- Peptide Label: isoform X5
- UniProtKB: B4E2A9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047275515   ⟸   XM_047419559
- Peptide Label: isoform X4
- UniProtKB: B4E2A9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054212779   ⟸   XM_054356804
- Peptide Label: isoform X1
- UniProtKB: B4DQA6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054212776   ⟸   XM_054356801
- Peptide Label: isoform X1
- UniProtKB: B4DQA6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054212789   ⟸   XM_054356814
- Peptide Label: isoform X2
- UniProtKB: B4DQA6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054212799   ⟸   XM_054356824
- Peptide Label: isoform X6
RefSeq Acc Id: XP_054212781   ⟸   XM_054356806
- Peptide Label: isoform X2
- UniProtKB: B4DQA6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054212768   ⟸   XM_054356793
- Peptide Label: isoform X1
- UniProtKB: B4DQA6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054212769   ⟸   XM_054356794
- Peptide Label: isoform X1
- UniProtKB: B4DQA6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054212786   ⟸   XM_054356811
- Peptide Label: isoform X2
- UniProtKB: B4DQA6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054212773   ⟸   XM_054356798
- Peptide Label: isoform X1
- UniProtKB: B4DQA6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054212772   ⟸   XM_054356797
- Peptide Label: isoform X1
- UniProtKB: B4DQA6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054212784   ⟸   XM_054356809
- Peptide Label: isoform X2
- UniProtKB: B4DQA6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054212778   ⟸   XM_054356803
- Peptide Label: isoform X1
- UniProtKB: B4DQA6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054212782   ⟸   XM_054356807
- Peptide Label: isoform X2
- UniProtKB: B4DQA6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054212775   ⟸   XM_054356800
- Peptide Label: isoform X1
- UniProtKB: B4DQA6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054212787   ⟸   XM_054356812
- Peptide Label: isoform X2
- UniProtKB: B4DQA6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054212794   ⟸   XM_054356819
- Peptide Label: isoform X4
- UniProtKB: B4E2A9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054212793   ⟸   XM_054356818
- Peptide Label: isoform X4
- UniProtKB: B4E2A9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054212777   ⟸   XM_054356802
- Peptide Label: isoform X1
- UniProtKB: B4DQA6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054212771   ⟸   XM_054356796
- Peptide Label: isoform X1
- UniProtKB: B4DQA6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054212783   ⟸   XM_054356808
- Peptide Label: isoform X2
- UniProtKB: B4DQA6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054212770   ⟸   XM_054356795
- Peptide Label: isoform X1
- UniProtKB: B4DQA6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054212785   ⟸   XM_054356810
- Peptide Label: isoform X2
- UniProtKB: B4DQA6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054212788   ⟸   XM_054356813
- Peptide Label: isoform X2
- UniProtKB: B4DQA6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054212774   ⟸   XM_054356799
- Peptide Label: isoform X1
- UniProtKB: B4DQA6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054212780   ⟸   XM_054356805
- Peptide Label: isoform X1
- UniProtKB: B4DQA6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054212797   ⟸   XM_054356822
- Peptide Label: isoform X4
- UniProtKB: B4E2A9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054212796   ⟸   XM_054356821
- Peptide Label: isoform X4
- UniProtKB: B4E2A9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054212795   ⟸   XM_054356820
- Peptide Label: isoform X4
- UniProtKB: B4E2A9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054212798   ⟸   XM_054356823
- Peptide Label: isoform X4
- UniProtKB: B4E2A9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054212791   ⟸   XM_054356816
- Peptide Label: isoform X4
- UniProtKB: B4E2A9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054212792   ⟸   XM_054356817
- Peptide Label: isoform X4
- UniProtKB: B4E2A9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054212790   ⟸   XM_054356815
- Peptide Label: isoform X3
Protein Domains
C2   RabBD

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4VX76-F1-model_v2 AlphaFold Q4VX76 1-610 view protein structure

Promoters
RGD ID:7209555
Promoter ID:EPDNEW_H10523
Type:initiation region
Name:SYTL3_2
Description:synaptotagmin like 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H10524  EPDNEW_H10525  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh386158,644,933 - 158,644,993EPDNEW
RGD ID:7209557
Promoter ID:EPDNEW_H10524
Type:initiation region
Name:SYTL3_1
Description:synaptotagmin like 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H10523  EPDNEW_H10525  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh386158,650,054 - 158,650,114EPDNEW
RGD ID:7209559
Promoter ID:EPDNEW_H10525
Type:initiation region
Name:SYTL3_3
Description:synaptotagmin like 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H10523  EPDNEW_H10524  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh386158,663,131 - 158,663,191EPDNEW
RGD ID:6804836
Promoter ID:HG_KWN:55622
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_001009991,   OTTHUMT00000042877
Position:
Human AssemblyChrPosition (strand)Source
Build 366158,990,526 - 158,991,057 (+)MPROMDB
RGD ID:6804834
Promoter ID:HG_KWN:55623
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell
Transcripts:UC003QRP.1,   UC003QRQ.1,   UC003QRR.1,   UC003QRS.1
Position:
Human AssemblyChrPosition (strand)Source
Build 366159,001,441 - 159,001,941 (+)MPROMDB
RGD ID:6816484
Promoter ID:HG_SPT:55033
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562
Transcripts:AA313891,   AI091450,   AI674404,   AL567177,   BG059681,   BU633217,   CA450395,   DB320403,   DB331640,   N64362
Position:
Human AssemblyChrPosition (strand)Source
Build 366159,105,426 - 159,105,926 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:15587 AgrOrtholog
COSMIC SYTL3 COSMIC
Ensembl Genes ENSG00000164674 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000360448 ENTREZGENE
  ENST00000360448.8 UniProtKB/Swiss-Prot
  ENST00000367081 ENTREZGENE
  ENST00000367081.7 UniProtKB/Swiss-Prot
  ENST00000611299 ENTREZGENE
  ENST00000611299.5 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.40.150 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000164674 GTEx
HGNC ID HGNC:15587 ENTREZGENE
Human Proteome Map SYTL3 Human Proteome Map
InterPro C2_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FYVE_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rab_BD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SYTL1-5_C2B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:94120 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 94120 ENTREZGENE
OMIM 620973 OMIM
PANTHER BITESIZE, ISOFORM I UniProtKB/Swiss-Prot
  BITESIZE, ISOFORM I UniProtKB/Swiss-Prot
  BITESIZE, ISOFORM I UniProtKB/TrEMBL
  BITESIZE, ISOFORM I UniProtKB/TrEMBL
  PTHR45716:SF1 UniProtKB/TrEMBL
Pfam FYVE_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00168 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA37986 PharmGKB
PROSITE PS50004 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RABBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00239 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP FYVE/PHD zinc finger UniProtKB/TrEMBL
  SSF49562 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF57903 UniProtKB/Swiss-Prot
UniProt B4DQA6 ENTREZGENE, UniProtKB/TrEMBL
  B4E2A9 ENTREZGENE, UniProtKB/TrEMBL
  Q496J4 ENTREZGENE
  Q496J6 ENTREZGENE
  Q4VX76 ENTREZGENE
  Q5U3B9 ENTREZGENE
  SYTL3_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary Q496J4 UniProtKB/Swiss-Prot
  Q496J6 UniProtKB/Swiss-Prot
  Q5U3B9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-24 SYTL3  synaptotagmin like 3    synaptotagmin-like 3  Symbol and/or name change 5135510 APPROVED