PCDH10 (protocadherin 10) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: PCDH10 (protocadherin 10) Homo sapiens
Analyze
Symbol: PCDH10
Name: protocadherin 10
RGD ID: 1348202
HGNC Page HGNC:13404
Description: Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in membrane. Predicted to be active in glutamatergic synapse and postsynaptic membrane.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: DKFZp761O2023; KIAA1400; MGC133344; OL-PCDH; ortholog of OL-pcdh; PCDH19; protocadherin-10
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384133,149,294 - 133,208,606 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4133,149,294 - 133,208,606 (+)EnsemblGRCh38hg38GRCh38
GRCh374134,070,449 - 134,115,855 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364134,289,920 - 134,332,182 (+)NCBINCBI36Build 36hg18NCBI36
Build 344134,428,074 - 134,470,336NCBI
Celera4131,409,480 - 131,451,744 (+)NCBICelera
Cytogenetic Map4q28.3NCBI
HuRef4129,799,227 - 129,841,484 (+)NCBIHuRef
CHM1_14134,046,945 - 134,089,210 (+)NCBICHM1_1
T2T-CHM13v2.04136,472,535 - 136,531,845 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PCDH10Humanautistic disorder  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:18621663

1 to 20 of 87 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PCDH10Human(-)-epigallocatechin 3-gallate multiple interactionsEXP 6480464[potassium chromate(VI) co-treated with epigallocatechin gallate] results in increased expression of PCDH10 mRNACTDPMID:22079256
PCDH10Human17alpha-ethynylestradiol increases expressionISORGD:15658116480464Ethinyl Estradiol results in increased expression of PCDH10 mRNACTDPMID:29097150
PCDH10Human17beta-estradiol decreases expressionEXP 6480464Estradiol results in decreased expression of PCDH10 mRNACTDPMID:21185374|PMID:31614463
PCDH10Human2,2',5,5'-tetrachlorobiphenyl decreases expressionEXP 64804642,5,2',5'-tetrachlorobiphenyl analog results in decreased expression of PCDH10 mRNACTDPMID:36804509
PCDH10Human2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISORGD:15571926480464Tetrachlorodibenzodioxin promotes the reaction [AHR protein binds to PCDH10 promoter]CTDPMID:19654925
PCDH10Human2,3,7,8-Tetrachlorodibenzofuran decreases expressionISORGD:156581164804642,3,7,8-tetrachlorodibenzofuran results in decreased expression of PCDH10 mRNACTDPMID:32109520
PCDH10Human2,4-D multiple interactionsISORGD:15571926480464[lard co-treated with Cholesterol, Dietary co-treated with Dietary Sucrose co-treated with Fructose co-treated with Glucose more ...CTDPMID:37567420
PCDH10Human3,3',5,5'-tetrabromobisphenol A decreases expressionISORGD:15571926480464tetrabromobisphenol A results in decreased expression of PCDH10 mRNACTDPMID:25172293
PCDH10Human4,4'-sulfonyldiphenol increases expressionISORGD:15571926480464bisphenol S results in increased expression of PCDH10 mRNACTDPMID:30951980
PCDH10Human4,4'-sulfonyldiphenol multiple interactionsISORGD:15658116480464[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in decreased expression of more ...CTDPMID:36041667
PCDH10Humanaflatoxin B1 decreases methylationEXP 6480464Aflatoxin B1 results in decreased methylation of PCDH10 geneCTDPMID:27153756
PCDH10Humanaldehydo-D-glucose multiple interactionsISORGD:15571926480464[lard co-treated with Cholesterol, Dietary co-treated with Dietary Sucrose co-treated with Fructose co-treated with Glucose more ...CTDPMID:37567420
PCDH10Humanall-trans-retinoic acid increases expressionEXP 6480464Tretinoin results in increased expression of PCDH10 mRNACTDPMID:21934132
PCDH10Humanall-trans-retinoic acid multiple interactionsISORGD:15571926480464[mono-(2-ethylhexyl)phthalate co-treated with Tretinoin] results in decreased expression of PCDH10 mRNACTDPMID:36189433
PCDH10Humanarsane multiple interactionsEXP 6480464[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased more ...CTDPMID:39836092
PCDH10Humanarsenic atom multiple interactionsEXP 6480464[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased more ...CTDPMID:39836092
PCDH10Humanarsenite(3-) multiple interactionsEXP 6480464arsenite promotes the reaction [G3BP1 protein binds to PCDH10 mRNA]CTDPMID:32406909
PCDH10Humanbelinostat increases expressionEXP 6480464belinostat results in increased expression of PCDH10 mRNACTDPMID:26272509
PCDH10Humanbelinostat multiple interactionsEXP 6480464[NOG protein co-treated with belinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression more ...CTDPMID:27188386
PCDH10Humanbenzo[a]pyrene decreases methylationEXP 6480464Benzo(a)pyrene results in decreased methylation of PCDH10 exonCTDPMID:27901495

1 to 20 of 87 rows

Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PCDH10Humancell adhesion involved_inIEAUniProtKB-KW:KW-0130150520179 UniProtGO_REF:0000043
PCDH10Humancell adhesion involved_inIEAInterPro:IPR020894150520179 InterProGO_REF:0000002
PCDH10Humancell adhesion acts_upstream_of_or_withinIEAUniProtKB:E9PXQ7|ensembl:ENSMUSP00000131073150520179 EnsemblGO_REF:0000107
PCDH10Humancell adhesion involved_inIBAMGI:106671|MGI:1298369|MGI:1338042|MGI:1855700|MGI:2136740|MGI:2684924|PANTHER:PTN001932250|RGD:620504|UniProtKB:A0A8J1ME87|UniProtKB:Q9HBB8|ZFIN:ZDB-GENE-000607-1|ZFIN:ZDB-GENE-030131-4218150520179 GO_CentralGO_REF:0000033
PCDH10Humanhomophilic cell adhesion via plasma membrane adhesion molecules involved_inIEAInterPro:IPR002126150520179 InterProGO_REF:0000002
PCDH10Humanhomophilic cell adhesion via plasma membrane adhesion molecules acts_upstream_of_or_withinIEAUniProtKB:E9PXQ7|ensembl:ENSMUSP00000131073150520179 EnsemblGO_REF:0000107
PCDH10Humannervous system development involved_inIEAARBA:ARBA00027428150520179 UniProtGO_REF:0000117

Cellular Component
1 to 9 of 9 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PCDH10Humanglutamatergic synapse is_active_inIEAUniProtKB:E9PXQ7|ensembl:ENSMUSP00000131073150520179 EnsemblGO_REF:0000107
PCDH10Humanmembrane located_inIEAUniProtKB-SubCell:SL-0162150520179 UniProtGO_REF:0000044
PCDH10Humanmembrane located_inIEAInterPro:IPR002126|InterPro:IPR015919150520179 InterProGO_REF:0000002
PCDH10Humanmembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043
PCDH10Humanplasma membrane located_inIEAUniProtKB-KW:KW-1003150520179 UniProtGO_REF:0000043
PCDH10Humanplasma membrane is_active_inIBAMGI:106671|MGI:1298369|MGI:1338042|MGI:1891428|MGI:2136740|MGI:2136752|MGI:2157782|MGI:2684924|PANTHER:PTN001932250|RGD:1306348|RGD:69350|UniProtKB:O60245|UniProtKB:Q9HBB8|WB:WBGene00000395|ZFIN:ZDB-GENE-000607-1|ZFIN:ZDB-GENE-030131-4218150520179 GO_CentralGO_REF:0000033
PCDH10Humanplasma membrane located_inIEAUniProtKB-SubCell:SL-0039150520179 UniProtGO_REF:0000044
PCDH10Humanplasma membrane located_inIEAInterPro:IPR020894150520179 InterProGO_REF:0000002
PCDH10Humanpostsynaptic membrane is_active_inIEAUniProtKB:E9PXQ7|ensembl:ENSMUSP00000131073150520179 EnsemblGO_REF:0000107
1 to 9 of 9 rows

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PCDH10Humancalcium ion binding enablesIEAUniRule:UR000413450150520179 UniProtGO_REF:0000104
PCDH10Humancalcium ion binding enablesIEAInterPro:IPR002126|InterPro:IPR015919150520179 InterProGO_REF:0000002


#
Reference Title
Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:8012384   PMID:10380929   PMID:10716726   PMID:10718198   PMID:10817752   PMID:10835267   PMID:11230163   PMID:11549318   PMID:12477932   PMID:16247458   PMID:16344560   PMID:18621663  
PMID:18644894   PMID:19084528   PMID:19262141   PMID:19681120   PMID:19709077   PMID:20353276   PMID:20379614   PMID:21237250   PMID:21314642   PMID:21597995   PMID:21873635   PMID:21960365  
PMID:22206871   PMID:22245948   PMID:22543497   PMID:23171734   PMID:23180019   PMID:23260144   PMID:23321168   PMID:23321465   PMID:23569128   PMID:23839493   PMID:23929756   PMID:24309322  
PMID:24406169   PMID:24722188   PMID:24740680   PMID:25085246   PMID:25086586   PMID:25260683   PMID:25590240   PMID:26081897   PMID:26276761   PMID:26406945   PMID:26679037   PMID:26871474  
PMID:26881880   PMID:26927373   PMID:26970279   PMID:27338109   PMID:27609421   PMID:27659532   PMID:28498423   PMID:28514442   PMID:29202805   PMID:29676528   PMID:30213786   PMID:31088413  
PMID:31210316   PMID:31651684   PMID:31871319   PMID:32535594   PMID:33271263   PMID:33306668   PMID:33527791   PMID:33961781   PMID:35844135   PMID:36538983   PMID:37058252   PMID:37147733  
PMID:38569033   PMID:39048821  



PCDH10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384133,149,294 - 133,208,606 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4133,149,294 - 133,208,606 (+)EnsemblGRCh38hg38GRCh38
GRCh374134,070,449 - 134,115,855 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364134,289,920 - 134,332,182 (+)NCBINCBI36Build 36hg18NCBI36
Build 344134,428,074 - 134,470,336NCBI
Celera4131,409,480 - 131,451,744 (+)NCBICelera
Cytogenetic Map4q28.3NCBI
HuRef4129,799,227 - 129,841,484 (+)NCBIHuRef
CHM1_14134,046,945 - 134,089,210 (+)NCBICHM1_1
T2T-CHM13v2.04136,472,535 - 136,531,845 (+)NCBIT2T-CHM13v2.0
Pcdh10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39345,332,833 - 45,389,014 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl345,332,833 - 45,390,058 (+)EnsemblGRCm39 Ensembl
GRCm38345,378,398 - 45,434,579 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl345,378,398 - 45,435,623 (+)EnsemblGRCm38mm10GRCm38
MGSCv37345,182,320 - 45,238,501 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36345,474,806 - 45,479,230 (+)NCBIMGSCv36mm8
Celera345,037,595 - 45,093,756 (+)NCBICelera
Cytogenetic Map3BNCBI
cM Map320.35NCBI
Pcdh10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82130,553,432 - 130,619,591 (+)NCBIGRCr8
mRatBN7.22128,617,212 - 128,683,354 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2128,617,174 - 128,677,190 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.02136,992,355 - 137,017,705 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2136,993,208 - 137,014,492 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02156,481,902 - 156,505,195 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42132,890,164 - 132,932,966 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2126,100,636 - 126,125,570 (+)NCBICelera
Cytogenetic Map2q26NCBI
Pcdh10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554289,433,478 - 9,495,305 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554289,433,478 - 9,495,260 (-)NCBIChiLan1.0ChiLan1.0
PCDH10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23130,961,798 - 131,020,265 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14131,357,352 - 131,416,321 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04125,460,202 - 125,519,514 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14136,708,715 - 136,753,987 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4136,709,572 - 136,722,801 (+)Ensemblpanpan1.1panPan2
PCDH10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1198,671,750 - 8,732,663 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl198,691,727 - 8,731,690 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha198,845,071 - 8,906,078 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0198,734,170 - 8,795,507 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl198,734,589 - 8,794,538 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1198,657,959 - 8,718,822 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0199,018,006 - 9,078,894 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0199,453,748 - 9,515,017 (-)NCBIUU_Cfam_GSD_1.0
Pcdh10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530157,631,764 - 57,693,436 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366811,002,166 - 1,040,392 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366811,001,223 - 1,058,628 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PCDH10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl893,002,562 - 93,046,693 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1893,023,079 - 93,047,265 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2899,226,414 - 99,230,427 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PCDH10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1780,184,414 - 80,227,184 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl780,184,388 - 80,225,757 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603759,460,966 - 59,524,125 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pcdh10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477713,693,873 - 13,747,830 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477713,693,964 - 13,747,504 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in PCDH10
82 total Variants

1 to 10 of 113 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh38/hg38 4q28.2-31.21(chr4:128119872-142431375)x1 copy number loss See cases [RCV000051056] Chr4:128119872..142431375 [GRCh38]
Chr4:129041027..143352528 [GRCh37]
Chr4:129260477..143571978 [NCBI36]
Chr4:4q28.2-31.21
pathogenic
GRCh38/hg38 4q26-35.2(chr4:118065569-190042639)x3 copy number gain See cases [RCV000051785] Chr4:118065569..190042639 [GRCh38]
Chr4:118986724..190828225 [GRCh37]
Chr4:119206172..191200788 [NCBI36]
Chr4:4q26-35.2
pathogenic
GRCh38/hg38 4q27-35.2(chr4:121518223-190062270)x3 copy number gain See cases [RCV000051786] Chr4:121518223..190062270 [GRCh38]
Chr4:122439378..190828225 [GRCh37]
Chr4:122658828..191220419 [NCBI36]
Chr4:4q27-35.2
pathogenic
GRCh38/hg38 4q22.2-32.3(chr4:92913386-165299707)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051775]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051775]|See cases [RCV000051775] Chr4:92913386..165299707 [GRCh38]
Chr4:93834537..166220859 [GRCh37]
Chr4:94053560..166440309 [NCBI36]
Chr4:4q22.2-32.3
pathogenic
GRCh38/hg38 4q22.3-28.3(chr4:96092893-136410207)x3 copy number gain See cases [RCV000051776] Chr4:96092893..136410207 [GRCh38]
Chr4:97014044..137331362 [GRCh37]
Chr4:97233067..137550812 [NCBI36]
Chr4:4q22.3-28.3
pathogenic
GRCh38/hg38 4q26-31.21(chr4:116630862-145429900)x1 copy number loss See cases [RCV000053321] Chr4:116630862..145429900 [GRCh38]
Chr4:117552018..146351052 [GRCh37]
Chr4:117771466..146570502 [NCBI36]
Chr4:4q26-31.21
pathogenic
NM_020815.2(PCDH10):c.266C>T (p.Pro89Leu) single nucleotide variant Malignant melanoma [RCV000066274] Chr4:133150406 [GRCh38]
Chr4:134071561 [GRCh37]
Chr4:134291011 [NCBI36]
Chr4:4q28.3
not provided
GRCh38/hg38 4q28.3-35.2(chr4:131985253-190095391)x3 copy number gain See cases [RCV000137721] Chr4:131985253..190095391 [GRCh38]
Chr4:132906408..190828225 [GRCh37]
Chr4:133125858..191250527 [NCBI36]
Chr4:4q28.3-35.2
pathogenic|likely benign
GRCh38/hg38 4q28.1-35.1(chr4:125432943-185761887)x3 copy number gain See cases [RCV000138578] Chr4:125432943..185761887 [GRCh38]
Chr4:126354098..186683041 [GRCh37]
Chr4:126573548..186920035 [NCBI36]
Chr4:4q28.1-35.1
pathogenic|likely benign
GRCh38/hg38 4q26-28.3(chr4:117351881-133565667)x1 copy number loss See cases [RCV000143207] Chr4:117351881..133565667 [GRCh38]
Chr4:118273037..134486822 [GRCh37]
Chr4:118492485..134706272 [NCBI36]
Chr4:4q26-28.3
pathogenic
1 to 10 of 113 rows

Predicted Target Of
Summary Value
Count of predictions:1143
Count of miRNA genes:617
Interacting mature miRNAs:693
Transcripts:ENST00000264360, ENST00000511112
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597507600GWAS1603674_Hlevel of Phosphatidylcholine (O-16:0_16:1) in blood serum QTL GWAS1603674 (human)3e-08level of Phosphatidylcholine (O-16:0_16:1) in blood serum4133202073133202074Human

PCDH10_3290.2  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374134,073,739 - 134,074,597UniSTSGRCh37
Build 364134,293,189 - 134,294,047RGDNCBI36
Celera4131,412,749 - 131,413,607RGD
HuRef4129,802,496 - 129,803,354UniSTS
L29660  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374134,070,805 - 134,070,929UniSTSGRCh37
Build 364134,290,255 - 134,290,379RGDNCBI36
Celera4131,409,815 - 131,409,939RGD
Cytogenetic Map4q28.3UniSTS
HuRef4129,799,562 - 129,799,686UniSTS
SHGC-24774  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374134,112,578 - 134,112,702UniSTSGRCh37
Build 364134,332,028 - 134,332,152RGDNCBI36
Celera4131,451,590 - 131,451,714RGD
Cytogenetic Map4q28.3UniSTS
HuRef4129,841,330 - 129,841,454UniSTS
GeneMap99-GB4 RH Map4589.39UniSTS
Whitehead-RH Map4646.2UniSTS
GeneMap99-G3 RH Map48670.0UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
1181 2270 2723 2192 4915 1478 2018 2 394 994 233 2213 5871 5451 44 3722 802 1649 1517 167


1 to 24 of 24 rows
RefSeq Transcripts NM_020815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_032961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011532150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054350597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB037821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC105383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC136785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI479918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK024636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK314377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL157470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW007480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY013874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC039411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC042378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC111560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB052787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX760781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA318338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ534913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ534914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z60272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 24 of 24 rows

Ensembl Acc Id: ENST00000264360   ⟹   ENSP00000264360
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4133,149,294 - 133,194,700 (+)Ensembl
Ensembl Acc Id: ENST00000511112
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4133,154,893 - 133,208,606 (+)Ensembl
Ensembl Acc Id: ENST00000618019   ⟹   ENSP00000480512
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4133,149,315 - 133,153,888 (+)Ensembl
RefSeq Acc Id: NM_020815   ⟹   NP_065866
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384133,149,294 - 133,153,888 (+)NCBI
GRCh374134,070,470 - 134,112,732 (+)ENTREZGENE
Build 364134,289,920 - 134,293,854 (+)NCBI Archive
HuRef4129,799,227 - 129,841,484 (+)ENTREZGENE
CHM1_14134,046,920 - 134,051,505 (+)NCBI
T2T-CHM13v2.04136,472,535 - 136,477,129 (+)NCBI
Sequence:
RefSeq Acc Id: NM_032961   ⟹   NP_116586
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384133,149,294 - 133,194,700 (+)NCBI
GRCh374134,070,470 - 134,112,732 (+)ENTREZGENE
Build 364134,289,920 - 134,332,182 (+)NCBI Archive
HuRef4129,799,227 - 129,841,484 (+)ENTREZGENE
CHM1_14134,046,920 - 134,092,233 (+)NCBI
T2T-CHM13v2.04136,472,535 - 136,517,933 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011532150   ⟹   XP_011530452
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384133,149,294 - 133,208,606 (+)NCBI
Sequence:
RefSeq Acc Id: XM_054350597   ⟹   XP_054206572
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.04136,472,535 - 136,531,845 (+)NCBI
RefSeq Acc Id: NP_116586   ⟸   NM_032961
- Peptide Label: isoform 1 precursor
- UniProtKB: Q4W5F6 (UniProtKB/Swiss-Prot),   Q96SF0 (UniProtKB/Swiss-Prot),   Q9P2E7 (UniProtKB/Swiss-Prot),   X5D999 (UniProtKB/TrEMBL),   Q14DV7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_065866   ⟸   NM_020815
- Peptide Label: isoform 2 precursor
- UniProtKB: Q14DV7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011530452   ⟸   XM_011532150
- Peptide Label: isoform X1
- UniProtKB: Q14DV7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000480512   ⟸   ENST00000618019
Ensembl Acc Id: ENSP00000264360   ⟸   ENST00000264360
Name Modeler Protein Id AA Range Protein Structure
AF-Q9P2E7-F1-model_v2 AlphaFold Q9P2E7 1-1040 view protein structure

RGD ID:6868482
Promoter ID:EPDNEW_H7406
Type:multiple initiation site
Name:PCDH10_1
Description:protocadherin 10
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh384133,149,294 - 133,149,354EPDNEW
RGD ID:6802228
Promoter ID:HG_KWN:49116
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562
Transcripts:ENST00000394248,   NM_032961,   UC003IGY.2
Position:
Human AssemblyChrPosition (strand)Source
Build 364134,289,726 - 134,290,226 (+)MPROMDB


1 to 40 of 40 rows
Database
Acc Id
Source(s)
COSMIC PCDH10 COSMIC
Ensembl Genes ENSG00000138650 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000264360 ENTREZGENE
  ENST00000264360.7 UniProtKB/Swiss-Prot
  ENST00000618019 ENTREZGENE
  ENST00000618019.1 UniProtKB/Swiss-Prot
Gene3D-CATH Cadherins UniProtKB/Swiss-Prot
GTEx ENSG00000138650 GTEx
HGNC ID HGNC:13404 ENTREZGENE
Human Proteome Map PCDH10 Human Proteome Map
InterPro Cadherin-like_dom UniProtKB/Swiss-Prot
  Cadherin-like_sf UniProtKB/Swiss-Prot
  Cadherin_C UniProtKB/Swiss-Prot
  Cadherin_CS UniProtKB/Swiss-Prot
  Cadherin_N UniProtKB/Swiss-Prot
  Protocadherin/Cadherin-CA UniProtKB/Swiss-Prot
KEGG Report hsa:57575 UniProtKB/Swiss-Prot
NCBI Gene 57575 ENTREZGENE
OMIM 608286 OMIM
PANTHER CADHERIN-87A UniProtKB/Swiss-Prot
  PTHR24028:SF0 UniProtKB/Swiss-Prot
Pfam Cadherin UniProtKB/Swiss-Prot
  Cadherin_2 UniProtKB/Swiss-Prot
  Cadherin_C_2 UniProtKB/Swiss-Prot
PharmGKB PA32995 PharmGKB
PRINTS CADHERIN UniProtKB/Swiss-Prot
PROSITE CADHERIN_1 UniProtKB/Swiss-Prot
  CADHERIN_2 UniProtKB/Swiss-Prot
SMART SM00112 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF49313 UniProtKB/Swiss-Prot
UniProt PCD10_HUMAN UniProtKB/Swiss-Prot
  Q14DV7 ENTREZGENE, UniProtKB/TrEMBL
  Q4W5F6 ENTREZGENE
  Q96SF0 ENTREZGENE
  Q9NSR3_HUMAN UniProtKB/TrEMBL
  Q9P2E7 ENTREZGENE
  X5D2R8_HUMAN UniProtKB/TrEMBL
  X5D999 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary Q4W5F6 UniProtKB/Swiss-Prot
  Q96SF0 UniProtKB/Swiss-Prot
1 to 40 of 40 rows