HDGFP1 (heparin binding growth factor pseudogene 1) - Rat Genome Database

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Gene: HDGFP1 (heparin binding growth factor pseudogene 1) Homo sapiens
Analyze
Symbol: HDGFP1
Name: heparin binding growth factor pseudogene 1
RGD ID: 1347851
HGNC Page HGNC:31836
Description: INTERACTS WITH mercury atom; mercury(0)
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: HDGFP; hepatoma derived growth factor pseudogene 1; hepatoma-derived growth factor pseudogene 1
Related Functional Gene: HDGF  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X131,646,640 - 131,648,237 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX131,646,639 - 131,646,890 (+)EnsemblGRCh38hg38GRCh38
GRCh37X130,780,649 - 130,782,246 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X130,608,230 - 130,610,027 (+)NCBINCBI36Build 36hg18NCBI36
CeleraX131,167,077 - 131,168,674 (+)NCBICelera
Cytogenetic MapXq26.2NCBI
HuRefX120,185,653 - 120,187,250 (+)NCBIHuRef
CHM1_1X130,692,236 - 130,693,833 (+)NCBICHM1_1
T2T-CHM13v2.0X129,970,855 - 129,972,452 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
mercury atom  (EXP)
mercury(0)  (EXP)

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:315
Count of miRNA genes:292
Interacting mature miRNAs:303
Transcripts:ENST00000405943
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
SHGC-2664  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371156,711,946 - 156,712,096UniSTSGRCh37
GRCh37X130,782,051 - 130,782,203UniSTSGRCh37
Build 36X130,609,732 - 130,609,884RGDNCBI36
Celera1129,783,178 - 129,783,328UniSTS
CeleraX131,168,479 - 131,168,631RGD
Cytogenetic Map1q21-q23UniSTS
Cytogenetic MapXq25UniSTS
Cytogenetic Map1q23.1UniSTS
HuRef1128,069,771 - 128,069,921UniSTS
HuRefX120,187,055 - 120,187,207UniSTS
GeneMap99-G3 RH Map18478.0UniSTS
SHGC-132399  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371156,711,944 - 156,712,089UniSTSGRCh37
GRCh37X130,782,058 - 130,782,205UniSTSGRCh37
Build 36X130,609,739 - 130,609,886RGDNCBI36
Celera1129,783,176 - 129,783,321UniSTS
CeleraX131,168,486 - 131,168,633RGD
Cytogenetic Map1q21-q23UniSTS
Cytogenetic MapXq25UniSTS
Cytogenetic Map1q23.1UniSTS
HuRef1128,069,769 - 128,069,914UniSTS
HuRefX120,187,062 - 120,187,209UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 3 1 1 21 1 3 9 5 8 19 1
Low 320 311 219 65 361 44 778 279 312 80 201 338 22 131 453
Below cutoff 605 848 419 141 399 91 1174 662 1018 68 299 343 50 330 789 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000405943
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX131,646,639 - 131,646,890 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC HDGFP1 COSMIC
Ensembl Genes ENSG00000227183 Ensembl
GTEx ENSG00000227183 GTEx
HGNC ID HGNC:31836 ENTREZGENE
Human Proteome Map HDGFP1 Human Proteome Map
NCBI Gene 474167 ENTREZGENE
PharmGKB PA134929105 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-04-04 HDGFP1  heparin binding growth factor pseudogene 1    hepatoma derived growth factor pseudogene 1  Symbol and/or name change 5135510 APPROVED
2017-01-31 HDGFP1  hepatoma derived growth factor pseudogene 1    hepatoma-derived growth factor pseudogene 1  Symbol and/or name change 5135510 APPROVED
2011-07-27 HDGFP1  hepatoma-derived growth factor pseudogene 1  HDGFP  hepatoma-derived growth factor (high-mobility group protein 1-like) pseudogene  Symbol and/or name change 5135510 APPROVED