ST13P3 (ST13, Hsp70 interacting protein pseudogene 3) - Rat Genome Database

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Gene: ST13P3 (ST13, Hsp70 interacting protein pseudogene 3) Homo sapiens
Analyze
Symbol: ST13P3
Name: ST13, Hsp70 interacting protein pseudogene 3
RGD ID: 1346696
HGNC Page HGNC:18552
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: FAM10A3; FAM10A3P; suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 3
Related Functional Gene: ST13  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812106,015,813 - 106,018,409 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12106,015,897 - 106,017,006 (+)EnsemblGRCh38hg38GRCh38
GRCh3712106,409,591 - 106,412,187 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612104,933,621 - 104,936,417 (+)NCBINCBI36Build 36hg18NCBI36
Celera12106,074,973 - 106,077,569 (+)NCBICelera
Cytogenetic Map12q23.3NCBI
HuRef12103,470,109 - 103,472,705 (+)NCBIHuRef
CHM1_112106,375,183 - 106,377,779 (+)NCBICHM1_1
T2T-CHM13v2.012105,978,566 - 105,981,162 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:12079276  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:124
Count of miRNA genes:121
Interacting mature miRNAs:124
Transcripts:ENST00000546640
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298449UAE2_HUrinary albumin excretion QTL 2 (human)20.005Urinary albumin excretionurine albumin:creatinine ratio (ACR)12102836889128836889Human
1559125SPSL2_HSerum P-selectin level QTL 2 (human)2.59Serum P-selectin level1289897665115897665Human
1643258BW205_HBody weight QTL 205 (human)4.080.00001Body fat amountpercent body fat1296630114122630114Human
1357361BW37_HBody weight QTL 37 (human)4.080.00001Body fat amount12102836889116423339Human
1643452BW104_HBody weight QTL 104 (human)1.890.005Body fat amountabdominal visceral12102395874128395874Human
1643264BW195_HBody weight QTL 195 (human)0.0151Body weightBMI1289897665115897665Human
1358827MULTSCL22_HMultiple sclerosis susceptibility QTL 22 (human)Multiple sclerosis susceptibility1289897665115897665Human
1357387BW58_HBody weight QTL 58 (human)2.30.0001Body weightfat free mass after exercise training1289438856115438856Human


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
1160 2212 2641 2021 4375 1468 2032 3 465 1297 315 2134 6031 5447 47 3220 737 1565 1471 162

Sequence


Ensembl Acc Id: ENST00000546640
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl12106,015,897 - 106,017,006 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC ST13P3 COSMIC
Ensembl Genes ENSG00000257773 Ensembl
GTEx ENSG00000257773 GTEx
HGNC ID HGNC:18552 ENTREZGENE
Human Proteome Map ST13P3 Human Proteome Map
NCBI Gene 144638 ENTREZGENE
PharmGKB PA38571 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-07 ST13P3  ST13, Hsp70 interacting protein pseudogene 3    suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 3  Symbol and/or name change 5135510 APPROVED
2011-07-27 ST13P3  suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 3  FAM10A3  family with sequence similarity 10, member A3  Symbol and/or name change 5135510 APPROVED