LINC00470 (long intergenic non-protein coding RNA 470) - Rat Genome Database

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Gene: LINC00470 (long intergenic non-protein coding RNA 470) Homo sapiens
Analyze
Symbol: LINC00470
Name: long intergenic non-protein coding RNA 470
RGD ID: 1343439
HGNC Page HGNC:1225
Description: ASSOCIATED WITH Autism; autistic disorder; INTERACTS WITH aflatoxin B1; Aflatoxin B2 alpha; benzo[a]pyrene
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: C18orf2
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38181,268,311 - 1,359,629 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl181,254,383 - 1,408,344 (-)EnsemblGRCh38hg38GRCh38
GRCh37181,268,312 - 1,359,630 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36181,244,390 - 1,349,440 (-)NCBINCBI36Build 36hg18NCBI36
Build 34181,244,389 - 1,349,440NCBI
Celera181,143,158 - 1,234,457 (-)NCBICelera
Cytogenetic Map18p11.32NCBI
HuRef181,228,594 - 1,319,913 (-)NCBIHuRef
CHM1_1181,266,954 - 1,358,264 (-)NCBICHM1_1
T2T-CHM13v2.0181,422,813 - 1,514,125 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
Autism  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11173868   PMID:14702039   PMID:29866190   PMID:31612313   PMID:31711642   PMID:32916774   PMID:33749070   PMID:33875645   PMID:36987665  


Genomics


Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 18p11.32-11.21(chr18:148963-14081888)x3 copy number gain See cases [RCV000051153] Chr18:148963..14081888 [GRCh38]
Chr18:148963..14081887 [GRCh37]
Chr18:138963..14071887 [NCBI36]
Chr18:18p11.32-11.21		 pathogenic
GRCh38/hg38 18p11.32(chr18:605175-1371075)x3 copy number gain See cases [RCV000134736] Chr18:605175..1371075 [GRCh38]
Chr18:605175..1371076 [GRCh37]
Chr18:595175..1361076 [NCBI36]
Chr18:18p11.32		 uncertain significance
GRCh38/hg38 18p11.32-q23(chr18:149089-80234391)x3 copy number gain See cases [RCV000134110] Chr18:149089..80234391 [GRCh38]
Chr18:149089..77992274 [GRCh37]
Chr18:139089..76093265 [NCBI36]
Chr18:18p11.32-q23		 pathogenic
GRCh38/hg38 18p11.32(chr18:1081117-1768089)x3 copy number gain See cases [RCV000135201] Chr18:1081117..1768089 [GRCh38]
Chr18:1081118..1768090 [GRCh37]
Chr18:1071118..1758090 [NCBI36]
Chr18:18p11.32		 likely benign
GRCh38/hg38 18p11.32-11.31(chr18:148963-6086668)x1 copy number loss See cases [RCV000135846] Chr18:148963..6086668 [GRCh38]
Chr18:148963..6086667 [GRCh37]
Chr18:138963..6076667 [NCBI36]
Chr18:18p11.32-11.31		 pathogenic
GRCh38/hg38 18p11.32-11.21(chr18:148963-14081888)x4 copy number gain See cases [RCV000135515] Chr18:148963..14081888 [GRCh38]
Chr18:148963..14081887 [GRCh37]
Chr18:138963..14071887 [NCBI36]
Chr18:18p11.32-11.21		 pathogenic
GRCh38/hg38 18p11.32(chr18:148963-2221286)x3 copy number gain See cases [RCV000135538] Chr18:148963..2221286 [GRCh38]
Chr18:148963..2221286 [GRCh37]
Chr18:138963..2211286 [NCBI36]
Chr18:18p11.32		 pathogenic
GRCh38/hg38 18p11.32(chr18:605210-2425566)x3 copy number gain See cases [RCV000135542] Chr18:605210..2425566 [GRCh38]
Chr18:605210..2425565 [GRCh37]
Chr18:595210..2415565 [NCBI36]
Chr18:18p11.32		 uncertain significance
GRCh38/hg38 18p11.32(chr18:148963-2313458)x1 copy number loss See cases [RCV000136589] Chr18:148963..2313458 [GRCh38]
Chr18:148963..2313457 [GRCh37]
Chr18:138963..2303457 [NCBI36]
Chr18:18p11.32		 pathogenic
GRCh38/hg38 18p11.32-11.31(chr18:131500-4421014)x3 copy number gain See cases [RCV000135894] Chr18:131500..4421014 [GRCh38]
Chr18:131500..4421014 [GRCh37]
Chr18:121500..4411014 [NCBI36]
Chr18:18p11.32-11.31		 pathogenic
GRCh38/hg38 18p11.32(chr18:148963-1949961)x1 copy number loss See cases [RCV000137111] Chr18:148963..1949961 [GRCh38]
Chr18:148963..1949962 [GRCh37]
Chr18:138963..1939962 [NCBI36]
Chr18:18p11.32		 pathogenic
GRCh38/hg38 18p11.32-11.22(chr18:180229-10762632)x1 copy number loss See cases [RCV000136860] Chr18:180229..10762632 [GRCh38]
Chr18:180229..10762630 [GRCh37]
Chr18:170229..10752630 [NCBI36]
Chr18:18p11.32-11.22		 pathogenic
GRCh38/hg38 18p11.32-11.21(chr18:148963-10900517)x1 copy number loss See cases [RCV000137105] Chr18:148963..10900517 [GRCh38]
Chr18:148963..10900515 [GRCh37]
Chr18:138963..10890515 [NCBI36]
Chr18:18p11.32-11.21		 pathogenic
GRCh38/hg38 18p11.32(chr18:148963-2563898)x1 copy number loss See cases [RCV000136645] Chr18:148963..2563898 [GRCh38]
Chr18:148963..2563897 [GRCh37]
Chr18:138963..2553897 [NCBI36]
Chr18:18p11.32		 uncertain significance
GRCh38/hg38 18p11.32-11.21(chr18:118760-14089410)x4 copy number gain See cases [RCV000137456] Chr18:118760..14089410 [GRCh38]
Chr18:118760..14089409 [GRCh37]
Chr18:108760..14079409 [NCBI36]
Chr18:18p11.32-11.21		 pathogenic|conflicting data from submitters
GRCh38/hg38 18p11.32-11.21(chr18:118760-14089410)x1 copy number loss See cases [RCV000137457] Chr18:118760..14089410 [GRCh38]
Chr18:118760..14089409 [GRCh37]
Chr18:108760..14079409 [NCBI36]
Chr18:18p11.32-11.21		 pathogenic
GRCh38/hg38 18p11.32(chr18:605210-1802497)x3 copy number gain See cases [RCV000137234] Chr18:605210..1802497 [GRCh38]
Chr18:605210..1802498 [GRCh37]
Chr18:595210..1792498 [NCBI36]
Chr18:18p11.32		 uncertain significance
GRCh38/hg38 18p11.32(chr18:967505-1652748)x3 copy number gain See cases [RCV000138180] Chr18:967505..1652748 [GRCh38]
Chr18:967506..1652749 [GRCh37]
Chr18:957506..1642749 [NCBI36]
Chr18:18p11.32		 uncertain significance
GRCh38/hg38 18p11.32-11.21(chr18:133157-14089410)x1 copy number loss See cases [RCV000138101] Chr18:133157..14089410 [GRCh38]
Chr18:133157..14089409 [GRCh37]
Chr18:123157..14079409 [NCBI36]
Chr18:18p11.32-11.21		 pathogenic
GRCh38/hg38 18p11.32-11.31(chr18:118760-4342182)x1 copy number loss See cases [RCV000137727] Chr18:118760..4342182 [GRCh38]
Chr18:118760..4342182 [GRCh37]
Chr18:108760..4332182 [NCBI36]
Chr18:18p11.32-11.31		 likely pathogenic
GRCh38/hg38 18p11.32(chr18:1167291-1949961)x1 copy number loss See cases [RCV000137952] Chr18:1167291..1949961 [GRCh38]
Chr18:1167292..1949962 [GRCh37]
Chr18:1157292..1939962 [NCBI36]
Chr18:18p11.32		 likely benign
GRCh38/hg38 18p11.32(chr18:149089-1754473)x1 copy number loss See cases [RCV000138838] Chr18:149089..1754473 [GRCh38]
Chr18:149089..1754474 [GRCh37]
Chr18:139089..1744474 [NCBI36]
Chr18:18p11.32		 pathogenic
GRCh38/hg38 18p11.32-q23(chr18:118760-80254946)x3 copy number gain See cases [RCV000138656] Chr18:118760..80254946 [GRCh38]
Chr18:118760..78012829 [GRCh37]
Chr18:108760..76113817 [NCBI36]
Chr18:18p11.32-q23		 pathogenic|conflicting data from submitters
GRCh38/hg38 18p11.32-11.31(chr18:118760-6275718)x1 copy number loss See cases [RCV000139424] Chr18:118760..6275718 [GRCh38]
Chr18:118760..6275717 [GRCh37]
Chr18:108760..6265717 [NCBI36]
Chr18:18p11.32-11.31		 pathogenic
GRCh38/hg38 18p11.32-q23(chr18:149089-80254936)x3 copy number gain See cases [RCV000139397] Chr18:149089..80254936 [GRCh38]
Chr18:149089..78012819 [GRCh37]
Chr18:139089..76113807 [NCBI36]
Chr18:18p11.32-q23		 pathogenic
GRCh38/hg38 18p11.32-11.22(chr18:118760-8999132)x1 copy number loss See cases [RCV000139022] Chr18:118760..8999132 [GRCh38]
Chr18:118760..8999130 [GRCh37]
Chr18:108760..8989130 [NCBI36]
Chr18:18p11.32-11.22		 pathogenic
GRCh38/hg38 18p11.32-11.21(chr18:136226-15175006) copy number gain See cases [RCV000140442] Chr18:136226..15175006 [GRCh38]
Chr18:136226..15175005 [GRCh37]
Chr18:126226..15165005 [NCBI36]
Chr18:18p11.32-11.21		 pathogenic
GRCh38/hg38 18p11.32-11.31(chr18:149089-5276567)x1 copy number loss See cases [RCV000139503] Chr18:149089..5276567 [GRCh38]
Chr18:149089..5276566 [GRCh37]
Chr18:139089..5266566 [NCBI36]
Chr18:18p11.32-11.31		 pathogenic
GRCh38/hg38 18p11.32-11.21(chr18:14316-14206225)x3 copy number gain See cases [RCV000141427] Chr18:14316..14206225 [GRCh38]
Chr18:14316..14206224 [GRCh37]
Chr18:4316..14196224 [NCBI36]
Chr18:18p11.32-11.21		 pathogenic
GRCh38/hg38 18p11.32-11.31(chr18:85432-7094700)x1 copy number loss See cases [RCV000141428] Chr18:85432..7094700 [GRCh38]
Chr18:85432..7094699 [GRCh37]
Chr18:75432..7084699 [NCBI36]
Chr18:18p11.32-11.31		 pathogenic
GRCh38/hg38 18p11.32-11.21(chr18:118760-15024003)x1 copy number loss See cases [RCV000141086] Chr18:118760..15024003 [GRCh38]
Chr18:118760..15024002 [GRCh37]
Chr18:108760..15014002 [NCBI36]
Chr18:18p11.32-11.21		 pathogenic
GRCh38/hg38 18p11.32-11.31(chr18:136226-2994136)x1 copy number loss See cases [RCV000140922] Chr18:136226..2994136 [GRCh38]
Chr18:136226..2994134 [GRCh37]
Chr18:126226..2984134 [NCBI36]
Chr18:18p11.32-11.31		 pathogenic
GRCh38/hg38 18p11.32-11.31(chr18:118760-4470508)x1 copy number loss See cases [RCV000140659] Chr18:118760..4470508 [GRCh38]
Chr18:118760..4470508 [GRCh37]
Chr18:108760..4460508 [NCBI36]
Chr18:18p11.32-11.31		 pathogenic
GRCh38/hg38 18p11.32(chr18:1332066-1852553)x3 copy number gain See cases [RCV000141989] Chr18:1332066..1852553 [GRCh38]
Chr18:1332067..1852554 [GRCh37]
Chr18:1322067..1842554 [NCBI36]
Chr18:18p11.32		 likely benign
GRCh38/hg38 18p11.32-11.21(chr18:48782-14978076)x1 copy number loss See cases [RCV000141627] Chr18:48782..14978076 [GRCh38]
Chr18:48782..14978075 [GRCh37]
Chr18:38782..14968075 [NCBI36]
Chr18:18p11.32-11.21		 pathogenic
GRCh38/hg38 18p11.32-q23(chr18:136227-80256240)x3 copy number gain See cases [RCV000142244] Chr18:136227..80256240 [GRCh38]
Chr18:136227..78014123 [GRCh37]
Chr18:126227..76115097 [NCBI36]
Chr18:18p11.32-q23		 pathogenic
GRCh38/hg38 18p11.32(chr18:148963-1413685)x1 copy number loss See cases [RCV000142370] Chr18:148963..1413685 [GRCh38]
Chr18:148963..1413686 [GRCh37]
Chr18:138963..1403686 [NCBI36]
Chr18:18p11.32		 uncertain significance
GRCh38/hg38 18p11.32(chr18:1076081-1778651)x3 copy number gain See cases [RCV000142029] Chr18:1076081..1778651 [GRCh38]
Chr18:1076082..1778652 [GRCh37]
Chr18:1066082..1768652 [NCBI36]
Chr18:18p11.32		 uncertain significance
GRCh38/hg38 18p11.32-11.21(chr18:958974-11954935)x1 copy number loss See cases [RCV000142225] Chr18:958974..11954935 [GRCh38]
Chr18:958975..11954934 [GRCh37]
Chr18:948975..11944934 [NCBI36]
Chr18:18p11.32-11.21		 pathogenic
GRCh38/hg38 18p11.32-11.31(chr18:136226-4002983)x1 copy number loss See cases [RCV000142175] Chr18:136226..4002983 [GRCh38]
Chr18:136226..4002983 [GRCh37]
Chr18:126226..3992983 [NCBI36]
Chr18:18p11.32-11.31		 pathogenic
GRCh38/hg38 18p11.32-11.31(chr18:149089-5458472)x3 copy number gain See cases [RCV000143058] Chr18:149089..5458472 [GRCh38]
Chr18:149089..5458471 [GRCh37]
Chr18:139089..5448471 [NCBI36]
Chr18:18p11.32-11.31		 pathogenic
GRCh38/hg38 18p11.32-11.21(chr18:136226-15198991)x4 copy number gain See cases [RCV000143434] Chr18:136226..15198991 [GRCh38]
Chr18:136226..15198990 [GRCh37]
Chr18:126226..15188990 [NCBI36]
Chr18:18p11.32-11.21		 pathogenic
GRCh38/hg38 18p11.32-11.21(chr18:118760-12642431)x3 copy number gain See cases [RCV000143194] Chr18:118760..12642431 [GRCh38]
Chr18:118760..12642430 [GRCh37]
Chr18:108760..12632430 [NCBI36]
Chr18:18p11.32-11.21		 uncertain significance
GRCh38/hg38 18p11.32-q23(chr18:136226-80256240)x3 copy number gain See cases [RCV000143218] Chr18:136226..80256240 [GRCh38]
Chr18:136226..78014123 [GRCh37]
Chr18:126226..76115097 [NCBI36]
Chr18:18p11.32-q23		 pathogenic
GRCh38/hg38 18p11.32-q23(chr18:148963-80252149)x3 copy number gain See cases [RCV000148072] Chr18:148963..80252149 [GRCh38]
Chr18:148963..78010032 [GRCh37]
Chr18:138963..76111023 [NCBI36]
Chr18:18p11.32-q23		 pathogenic
GRCh38/hg38 18p11.32-11.31(chr18:136226-4802275)x1 copy number loss See cases [RCV000143661] Chr18:136226..4802275 [GRCh38]
Chr18:136226..4802274 [GRCh37]
Chr18:126226..4792274 [NCBI36]
Chr18:18p11.32-11.31		 pathogenic
GRCh38/hg38 18p11.32-11.21(chr18:136226-14337134)x3 copy number gain See cases [RCV000143477] Chr18:136226..14337134 [GRCh38]
Chr18:136226..14337133 [GRCh37]
Chr18:126226..14327133 [NCBI36]
Chr18:18p11.32-11.21		 pathogenic
GRCh38/hg38 18p11.32-11.21(chr18:148963-14081888)x1 copy number loss See cases [RCV000148129] Chr18:148963..14081888 [GRCh38]
Chr18:148963..14081887 [GRCh37]
Chr18:138963..14071887 [NCBI36]
Chr18:18p11.32-11.21		 pathogenic
GRCh38/hg38 18p11.32-11.21(chr18:148963-13715860)x1 copy number loss See cases [RCV000051027] Chr18:148963..13715860 [GRCh38]
Chr18:148963..13715859 [GRCh37]
Chr18:138963..13705859 [NCBI36]
Chr18:18p11.32-11.21		 pathogenic
GRCh38/hg38 18p11.32-11.21(chr18:10001-15380684)x3 copy number gain See cases [RCV000052499] Chr18:10001..15380684 [GRCh38]
Chr18:10001..15380683 [GRCh37]
Chr18:1..15370683 [NCBI36]
Chr18:18p11.32-11.21		 pathogenic
GRCh38/hg38 18p11.32-q23(chr18:53345-80209986)x3 copy number gain See cases [RCV000052501] Chr18:53345..80209986 [GRCh38]
Chr18:53345..77967869 [GRCh37]
Chr18:43345..76068860 [NCBI36]
Chr18:18p11.32-q23		 pathogenic
GRCh38/hg38 18p11.32-q11.1(chr18:53345-20948503)x3 copy number gain See cases [RCV000052504] Chr18:53345..20948503 [GRCh38]
Chr18:53345..18528464 [GRCh37]
Chr18:43345..16782462 [NCBI36]
Chr18:18p11.32-q11.1		 pathogenic
GRCh38/hg38 18p11.32-q23(chr18:148763-80252290)x3 copy number gain See cases [RCV000052507] Chr18:148763..80252290 [GRCh38]
Chr18:148763..78010173 [GRCh37]
Chr18:138763..76111164 [NCBI36]
Chr18:18p11.32-q23		 pathogenic
GRCh38/hg38 18p11.32-q11.1(chr18:148963-21040153)x3 copy number gain See cases [RCV000052513] Chr18:148963..21040153 [GRCh38]
Chr18:148963..18620114 [GRCh37]
Chr18:138963..16874112 [NCBI36]
Chr18:18p11.32-q11.1		 pathogenic
GRCh38/hg38 18p11.32-q23(chr18:148963-80244381)x3 copy number gain See cases [RCV000052514] Chr18:148963..80244381 [GRCh38]
Chr18:148963..78002264 [GRCh37]
Chr18:138963..76103255 [NCBI36]
Chr18:18p11.32-q23		 pathogenic
GRCh38/hg38 18p11.32-11.31(chr18:180230-4199943)x3 copy number gain See cases [RCV000052533] Chr18:180230..4199943 [GRCh38]
Chr18:180230..4199943 [GRCh37]
Chr18:170230..4189943 [NCBI36]
Chr18:18p11.32-11.31		 pathogenic
GRCh38/hg38 18p11.32-11.31(chr18:53344-7029134)x1 copy number loss See cases [RCV000053455] Chr18:53344..7029134 [GRCh38]
Chr18:53344..7029133 [GRCh37]
Chr18:43344..7019133 [NCBI36]
Chr18:18p11.32-11.31		 pathogenic
GRCh38/hg38 18p11.32-11.22(chr18:112259-9135777)x1 copy number loss See cases [RCV000053456] Chr18:112259..9135777 [GRCh38]
Chr18:112259..9135775 [GRCh37]
Chr18:102259..9125775 [NCBI36]
Chr18:18p11.32-11.22		 pathogenic
GRCh38/hg38 18p11.32-11.21(chr18:112259-14122522)x1 copy number loss See cases [RCV000053457] Chr18:112259..14122522 [GRCh38]
Chr18:112259..14122521 [GRCh37]
Chr18:102259..14112521 [NCBI36]
Chr18:18p11.32-11.21		 pathogenic
GRCh38/hg38 18p11.32-11.21(chr18:131700-15121055)x1 copy number loss See cases [RCV000053458] Chr18:131700..15121055 [GRCh38]
Chr18:131700..15121054 [GRCh37]
Chr18:121700..15111054 [NCBI36]
Chr18:18p11.32-11.21		 pathogenic
GRCh38/hg38 18p11.32-11.31(chr18:131700-3279166)x1 copy number loss See cases [RCV000053460] Chr18:131700..3279166 [GRCh38]
Chr18:131700..3279164 [GRCh37]
Chr18:121700..3269164 [NCBI36]
Chr18:18p11.32-11.31		 pathogenic
GRCh38/hg38 18p11.32-11.21(chr18:131700-14226905)x1 copy number loss See cases [RCV000053461] Chr18:131700..14226905 [GRCh38]
Chr18:131700..14226904 [GRCh37]
Chr18:121700..14216904 [NCBI36]
Chr18:18p11.32-11.21		 pathogenic
GRCh38/hg38 18p11.32-11.22(chr18:131700-10536767)x1 copy number loss See cases [RCV000053781] Chr18:131700..10536767 [GRCh38]
Chr18:131700..10536764 [GRCh37]
Chr18:121700..10526764 [NCBI36]
Chr18:18p11.32-11.22		 pathogenic
GRCh38/hg38 18p11.32-11.31(chr18:148763-3345033)x1 copy number loss See cases [RCV000053783] Chr18:148763..3345033 [GRCh38]
Chr18:148763..3345031 [GRCh37]
Chr18:138763..3335031 [NCBI36]
Chr18:18p11.32-11.31		 pathogenic
GRCh38/hg38 18p11.32-11.21(chr18:148963-13530126)x1 copy number loss See cases [RCV000053784] Chr18:148963..13530126 [GRCh38]
Chr18:148963..13530125 [GRCh37]
Chr18:138963..13520125 [NCBI36]
Chr18:18p11.32-11.21		 pathogenic
GRCh38/hg38 18p11.32-11.31(chr18:148963-6731495)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053785]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053785]|See cases [RCV000053785] Chr18:148963..6731495 [GRCh38]
Chr18:148963..6731494 [GRCh37]
Chr18:138963..6721494 [NCBI36]
Chr18:18p11.32-11.31		 pathogenic
GRCh38/hg38 18p11.32-11.22(chr18:148963-8572827)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053786]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053786]|See cases [RCV000053786] Chr18:148963..8572827 [GRCh38]
Chr18:148963..8572825 [GRCh37]
Chr18:138963..8562825 [NCBI36]
Chr18:18p11.32-11.22		 pathogenic
GRCh38/hg38 18p11.32-11.21(chr18:148963-13068104)x1 copy number loss See cases [RCV000053787] Chr18:148963..13068104 [GRCh38]
Chr18:148963..13068103 [GRCh37]
Chr18:138963..13058103 [NCBI36]
Chr18:18p11.32-11.21		 pathogenic
GRCh38/hg38 18p11.32(chr18:829995-1782083)x3 copy number gain See cases [RCV000054079] Chr18:829995..1782083 [GRCh38]
Chr18:829996..1782084 [GRCh37]
Chr18:819996..1772084 [NCBI36]
Chr18:18p11.32		 uncertain significance
GRCh38/hg38 18p11.32-q23(chr18:148963-80252149)x3 copy number gain See cases [RCV000051048] Chr18:148963..80252149 [GRCh38]
Chr18:148963..78010032 [GRCh37]
Chr18:138963..76111023 [NCBI36]
Chr18:18p11.32-q23		 pathogenic
GRCh38/hg38 18p11.32-11.21(chr18:148963-14081888)x1 copy number loss See cases [RCV000051154] Chr18:148963..14081888 [GRCh38]
Chr18:148963..14081887 [GRCh37]
Chr18:138963..14071887 [NCBI36]
Chr18:18p11.32-11.21		 pathogenic
NC_000018.10:g.(?_10000)_(1543845_?)del deletion Autism [RCV000754207] Chr18:10000..1543845 [GRCh38]
Chr18:18p11.32		 likely pathogenic
GRCh38/hg38 18p11.32-11.21(chr18:158286-14124574)x1 copy number loss Deletion of short arm of chromosome 18 [RCV003327630] Chr18:158286..14124574 [GRCh38]
Chr18:18p11.32-11.21		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1308
Count of miRNA genes:557
Interacting mature miRNAs:606
Transcripts:ENST00000269201, ENST00000334697, ENST00000412816, ENST00000577403, ENST00000577867, ENST00000578835, ENST00000580336, ENST00000581212, ENST00000581430, ENST00000582570, ENST00000582862, ENST00000584090, ENST00000584492
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
D18S1076  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37181,356,112 - 1,356,259UniSTSGRCh37
Build 36181,346,112 - 1,346,259RGDNCBI36
Celera181,230,939 - 1,231,086RGD
HuRef181,316,395 - 1,316,542UniSTS
D18S1316  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37181,308,306 - 1,308,554UniSTSGRCh37
Build 36181,298,306 - 1,298,554RGDNCBI36
Celera181,183,152 - 1,183,400RGD
HuRef181,268,610 - 1,268,858UniSTS
TNG Radiation Hybrid Map18126.0UniSTS
Stanford-G3 RH Map1878.0UniSTS
NCBI RH Map1825.0UniSTS
SHGC-59268  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374103,943,418 - 103,943,567UniSTSGRCh37
Build 364104,162,867 - 104,163,016RGDNCBI36
Celera4101,240,519 - 101,240,668RGD
Celera181,216,344 - 1,216,502UniSTS
HuRef181,301,798 - 1,301,956UniSTS
HuRef499,677,172 - 99,677,321UniSTS
GeneMap99-GB4 RH Map4494.74UniSTS
Whitehead-RH Map4526.8UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2 2 5 3 4 3 8 2 1
Low 67 17 249 135 104 129 111 29 66 20 485 191 11 12 42 3
Below cutoff 1663 1677 1107 352 807 262 2420 1241 2287 214 717 1070 97 867 1395

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000412816
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,268,311 - 1,407,180 (-)Ensembl
RefSeq Acc Id: ENST00000577403
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,269,526 - 1,406,996 (-)Ensembl
RefSeq Acc Id: ENST00000577867
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,269,011 - 1,359,650 (-)Ensembl
RefSeq Acc Id: ENST00000578835
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,269,567 - 1,359,557 (-)Ensembl
RefSeq Acc Id: ENST00000580336
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,368,290 - 1,392,185 (-)Ensembl
RefSeq Acc Id: ENST00000581212
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,269,821 - 1,359,629 (-)Ensembl
RefSeq Acc Id: ENST00000581430
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,269,672 - 1,407,178 (-)Ensembl
RefSeq Acc Id: ENST00000582570
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,368,089 - 1,408,344 (-)Ensembl
RefSeq Acc Id: ENST00000582862
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,269,538 - 1,359,227 (-)Ensembl
RefSeq Acc Id: ENST00000584090
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,254,383 - 1,359,439 (-)Ensembl
RefSeq Acc Id: ENST00000584492
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,269,176 - 1,359,590 (-)Ensembl
RefSeq Acc Id: ENST00000653213
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,269,526 - 1,407,212 (-)Ensembl
RefSeq Acc Id: ENST00000653775
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,254,583 - 1,407,216 (-)Ensembl
RefSeq Acc Id: ENST00000654559
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,269,526 - 1,407,234 (-)Ensembl
RefSeq Acc Id: ENST00000655957
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,269,528 - 1,407,188 (-)Ensembl
RefSeq Acc Id: ENST00000657121
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,269,528 - 1,407,188 (-)Ensembl
RefSeq Acc Id: ENST00000657423
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,254,383 - 1,407,211 (-)Ensembl
RefSeq Acc Id: ENST00000657618
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,254,383 - 1,407,078 (-)Ensembl
RefSeq Acc Id: ENST00000657919
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,269,523 - 1,360,085 (-)Ensembl
RefSeq Acc Id: ENST00000658090
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,302,717 - 1,407,216 (-)Ensembl
RefSeq Acc Id: ENST00000659094
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,269,526 - 1,407,088 (-)Ensembl
RefSeq Acc Id: ENST00000659289
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,269,528 - 1,407,169 (-)Ensembl
RefSeq Acc Id: ENST00000660358
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,269,526 - 1,360,213 (-)Ensembl
RefSeq Acc Id: ENST00000660475
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,254,582 - 1,407,220 (-)Ensembl
RefSeq Acc Id: ENST00000660947
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,254,387 - 1,359,058 (-)Ensembl
RefSeq Acc Id: ENST00000660964
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,269,526 - 1,407,057 (-)Ensembl
RefSeq Acc Id: ENST00000661233
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,269,526 - 1,407,220 (-)Ensembl
RefSeq Acc Id: ENST00000661646
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,269,524 - 1,407,220 (-)Ensembl
RefSeq Acc Id: ENST00000661852
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,269,523 - 1,407,206 (-)Ensembl
RefSeq Acc Id: ENST00000661931
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,254,597 - 1,407,053 (-)Ensembl
RefSeq Acc Id: ENST00000663392
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,269,535 - 1,279,331 (-)Ensembl
RefSeq Acc Id: ENST00000663512
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,269,529 - 1,366,103 (-)Ensembl
RefSeq Acc Id: ENST00000665133
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,269,528 - 1,407,088 (-)Ensembl
RefSeq Acc Id: ENST00000666542
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,269,529 - 1,407,215 (-)Ensembl
RefSeq Acc Id: ENST00000667225
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,349,150 - 1,407,231 (-)Ensembl
RefSeq Acc Id: ENST00000667416
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,269,522 - 1,407,228 (-)Ensembl
RefSeq Acc Id: ENST00000667776
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,269,525 - 1,407,186 (-)Ensembl
RefSeq Acc Id: ENST00000669153
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,269,528 - 1,407,244 (-)Ensembl
RefSeq Acc Id: ENST00000669242
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,254,389 - 1,407,220 (-)Ensembl
RefSeq Acc Id: ENST00000669312
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,269,584 - 1,407,220 (-)Ensembl
RefSeq Acc Id: ENST00000671558
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,269,528 - 1,407,088 (-)Ensembl
RefSeq Acc Id: ENST00000671645
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl181,269,527 - 1,276,647 (-)Ensembl
RefSeq Acc Id: NR_023925
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38181,268,311 - 1,359,629 (-)NCBI
GRCh37181,268,312 - 1,359,630 (-)RGD
Celera181,143,158 - 1,234,457 (-)RGD
HuRef181,228,594 - 1,319,913 (-)RGD
CHM1_1181,266,954 - 1,358,264 (-)NCBI
T2T-CHM13v2.0181,422,813 - 1,514,125 (-)NCBI
Sequence:
RefSeq Acc Id: NR_023926
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38181,268,311 - 1,359,629 (-)NCBI
GRCh37181,268,312 - 1,359,630 (-)RGD
Celera181,143,158 - 1,234,457 (-)RGD
HuRef181,228,594 - 1,319,913 (-)RGD
CHM1_1181,266,954 - 1,358,264 (-)NCBI
T2T-CHM13v2.0181,422,813 - 1,514,125 (-)NCBI
Sequence:
RefSeq Acc Id: NR_023927
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38181,268,311 - 1,359,629 (-)NCBI
GRCh37181,268,312 - 1,359,630 (-)RGD
Celera181,143,158 - 1,234,457 (-)RGD
HuRef181,228,594 - 1,319,913 (-)RGD
CHM1_1181,266,954 - 1,358,264 (-)NCBI
T2T-CHM13v2.0181,422,813 - 1,514,125 (-)NCBI
Sequence:
RefSeq Acc Id: NR_110327
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38181,268,311 - 1,359,629 (-)NCBI
HuRef181,228,594 - 1,319,913 (-)NCBI
CHM1_1181,266,954 - 1,358,264 (-)NCBI
T2T-CHM13v2.0181,422,813 - 1,514,125 (-)NCBI
Sequence:
Reference Protein Sequences

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9BZP3-F1-model_v2 AlphaFold Q9BZP3 1-86 view protein structure


Additional Information

Database Acc Id Source(s)
COSMIC LINC00470 COSMIC
Ensembl Genes ENSG00000132204 Ensembl
GTEx ENSG00000132204 GTEx
HGNC ID HGNC:1225 ENTREZGENE
Human Proteome Map LINC00470 Human Proteome Map
NCBI Gene 56651 ENTREZGENE
PharmGKB PA25594 PharmGKB
RNAcentral URS000075A23E RNACentral
  URS000075C3AD RNACentral
  URS000075E0F3 RNACentral
  URS000075E746 RNACentral
UniProt CR002_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q9BZP2 UniProtKB/Swiss-Prot
  Q9BZP4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-09-13 LINC00470  long intergenic non-protein coding RNA 470  C18orf2  chromosome 18 open reading frame 2  Symbol and/or name change 5135510 APPROVED