SHGC-59268 Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Marker: SHGC-59268

Symbol: SHGC-59268
Previously known as: WI-18304; EST373417; 
RGD ID: 2160782
Expected Size: 150 (bp)
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374103,943,418 - 103,943,567UniSTSGRCh37
Build 364104,162,867 - 104,163,016RGDNCBI36
Celera4101,240,519 - 101,240,668RGD
Celera181,216,344 - 1,216,502UniSTS
HuRef181,301,798 - 1,301,956UniSTS
HuRef499,677,172 - 99,677,321UniSTS
GeneMap99-GB4 RH Map4494.74UniSTS
Whitehead-RH Map4526.8UniSTS
Is Marker For: Genes:   LINC00470  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer GGGATTTGTCTGTTTTATTCATTG
Reverse Primer AATTTGTTGGGTGAAAGGCA
 

Region

Nucleotide Sequences
GenBank Nucleotide AC097485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH003513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM001612.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM001626.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS486023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS486086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS990661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DS990724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL000046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL295348.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL583060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GL583243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  H71507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH976326.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH976399.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 56651 UniSTS
UniSTS SHGC-59268 UniSTS SSLP Pipeline