DDIT4L (DNA damage inducible transcript 4 like) - Rat Genome Database

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Gene: DDIT4L (DNA damage inducible transcript 4 like) Homo sapiens
Analyze
Symbol: DDIT4L
Name: DNA damage inducible transcript 4 like
RGD ID: 1342784
HGNC Page HGNC:30555
Description: Predicted to be involved in negative regulation of signal transduction. Predicted to be located in cytoplasm.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: DNA damage-inducible transcript 4-like protein; DNA-damage-inducible transcript 4-like; HIF-1 responsive protein RTP801-like; homolog of mouse SMHS1; REDD-2; REDD2; regulated in development and DNA damage response 2; Rtp801L
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384100,185,870 - 100,190,468 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4100,185,870 - 100,190,782 (-)EnsemblGRCh38hg38GRCh38
GRCh374101,107,027 - 101,111,625 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364101,326,050 - 101,330,636 (-)NCBINCBI36Build 36hg18NCBI36
Build 344101,464,206 - 101,468,791NCBI
Celera498,405,052 - 98,409,638 (-)NCBICelera
Cytogenetic Map4q24NCBI
HuRef496,845,264 - 96,850,266 (-)NCBIHuRef
CHM1_14101,083,602 - 101,088,230 (-)NCBICHM1_1
T2T-CHM13v2.04103,501,503 - 103,506,101 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DDIT4LHumanmelanoma  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:16778180

1 to 20 of 148 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DDIT4LHuman1,2-dimethylhydrazine increases expressionISORGD:73345764804641,2-Dimethylhydrazine results in increased expression of DDIT4L mRNACTDPMID:22206623
DDIT4LHuman17beta-estradiol decreases expressionISORGD:7334576480464Estradiol results in decreased expression of DDIT4L mRNACTDPMID:19484750
DDIT4LHuman17beta-estradiol decreases expressionEXP 6480464Estradiol results in decreased expression of DDIT4L mRNACTDPMID:36828454
DDIT4LHuman17beta-estradiol decreases expressionISORGD:23229616480464Estradiol results in decreased expression of DDIT4L mRNACTDPMID:32145629
DDIT4LHuman1H-pyrazole increases expressionISORGD:7334576480464pyrazole results in increased expression of DDIT4L mRNACTDPMID:17945193
DDIT4LHuman2,2',5,5'-tetrachlorobiphenyl increases expressionEXP 64804642,5,2',5'-tetrachlorobiphenyl analog results in increased expression of DDIT4L mRNACTDPMID:36804509
DDIT4LHuman2,3,7,8-tetrachlorodibenzodioxine increases expressionISORGD:7334576480464Tetrachlorodibenzodioxin results in increased expression of DDIT4L mRNACTDPMID:19933214
DDIT4LHuman2,3,7,8-tetrachlorodibenzodioxine decreases expressionISORGD:23229616480464Tetrachlorodibenzodioxin results in decreased expression of DDIT4L mRNACTDPMID:34747641
DDIT4LHuman2,3,7,8-tetrachlorodibenzodioxine increases expressionISORGD:23229616480464Tetrachlorodibenzodioxin results in increased expression of DDIT4L mRNACTDPMID:20558275|PMID:32109520
DDIT4LHuman2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISORGD:7334576480464[TIPARP gene mutant form results in increased susceptibility to Tetrachlorodibenzodioxin] which results in increased expression more ...CTDPMID:25975270
DDIT4LHuman2-acetamidofluorene increases expressionISORGD:73345764804642-Acetylaminofluorene results in increased expression of DDIT4L mRNACTDPMID:21607683
DDIT4LHuman2-amino-2-deoxy-D-glucopyranose increases expressionISORGD:23229616480464Glucosamine results in increased expression of DDIT4L mRNACTDPMID:17109745
DDIT4LHuman4,4'-sulfonyldiphenol decreases expressionISORGD:7334576480464bisphenol S results in decreased expression of DDIT4L mRNACTDPMID:30951980
DDIT4LHuman4-amino-2,6-dinitrotoluene affects expressionISORGD:232296164804644-amino-2,6-dinitrotoluene affects the expression of DDIT4L mRNACTDPMID:21346803
DDIT4LHuman4-hydroxyphenyl retinamide increases expressionISORGD:7334576480464Fenretinide results in increased expression of DDIT4L mRNACTDPMID:28973697
DDIT4LHuman7,12-dimethyltetraphene increases expressionISORGD:73345764804649,10-Dimethyl-1,2-benzanthracene metabolite results in increased expression of DDIT4L mRNACTDPMID:32553695
DDIT4LHumanacrylamide decreases expressionISORGD:7334576480464Acrylamide results in decreased expression of DDIT4L mRNACTDPMID:30807115
DDIT4LHumanaflatoxin B1 increases expressionISORGD:7334576480464Aflatoxin B1 results in increased expression of DDIT4L mRNACTDPMID:19770486
DDIT4LHumanaflatoxin B1 increases expressionISORGD:23229616480464Aflatoxin B1 results in increased expression of DDIT4L mRNACTDPMID:22545673|PMID:23630614|PMID:25378103
DDIT4LHumanaflatoxin B1 increases methylationEXP 6480464Aflatoxin B1 results in increased methylation of DDIT4L geneCTDPMID:27153756

1 to 20 of 148 rows

Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DDIT4LHumannegative regulation of signal transduction involved_inIEAInterPro:IPR012918150520179 InterProGO_REF:0000002

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DDIT4LHumancytoplasm located_inIEAInterPro:IPR012918150520179 InterProGO_REF:0000002
DDIT4LHumancytoplasm located_inISSUniProtKB:Q9NX09150520179 UniProtGO_REF:0000024
DDIT4LHumancytoplasm located_inIEAUniProtKB-SubCell:SL-0086150520179 UniProtGO_REF:0000044
DDIT4LHumancytoplasm located_inIEAUniProtKB-KW:KW-0963150520179 UniProtGO_REF:0000043

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DDIT4LHumanprotein binding enablesIPIUniProtKB:P0C1Z6150520179 PMID:27107012IntActPMID:27107012
DDIT4LHumanprotein binding enablesIPIUniProtKB:P62308150520179 PMID:16189514IntActPMID:16189514
DDIT4LHumanprotein binding enablesIPIUniProtKB:P62308|UniProtKB:Q13137|UniProtKB:Q15014|UniProtKB:Q9UK45150520179 PMID:25416956IntActPMID:25416956
DDIT4LHumanprotein binding enablesIPIUniProtKB:O00204|UniProtKB:O00488|UniProtKB:O14525-2|UniProtKB:O14796|UniProtKB:O15197-2|UniProtKB:O15479|UniProtKB:O43598|UniProtKB:O43681|UniProtKB:O43741|UniProtKB:O60880|UniProtKB:O75344|UniProtKB:O75400-2|UniProtKB:O75419|UniProtKB:O75679|UniProtKB:O75716|UniProtKB:O75909-2|UniProtKB:O76011|UniProtKB:O76064|UniProtKB:O95257|UniProtKB:O95342|UniProtKB:O95429|UniProtKB:O95833|UniProtKB:O95989|UniProtKB:P07108-2|UniProtKB:P07947|UniProtKB:P09012|UniProtKB:P0CB47|UniProtKB:P0CG21|UniProtKB:P10599|UniProtKB:P16083|UniProtKB:P16118|UniProtKB:P20839-3|UniProtKB:P21333-2|UniProtKB:P25786|UniProtKB:P25800|UniProtKB:P28065|UniProtKB:P28069|UniProtKB:P31749|UniProtKB:P32320|UniProtKB:P35268|UniProtKB:P36508|UniProtKB:P38919|UniProtKB:P40937|UniProtKB:P41227|UniProtKB:P41240|UniProtKB:P43080|UniProtKB:P47929|UniProtKB:P49247|UniProtKB:P49760|UniProtKB:P49761|UniProtKB:P49789|UniProtKB:P50583|UniProtKB:P51687|UniProtKB:P51946|UniProtKB:P53674|UniProtKB:P55273|UniProtKB:P55735-3|UniProtKB:P55957|UniProtKB:P56279|UniProtKB:P57075-2|UniProtKB:P57077-4|UniProtKB:P57721-2|UniProtKB:P60660|UniProtKB:P60891|UniProtKB:P61758|UniProtKB:P62308|UniProtKB:P62310|UniProtKB:P62699|UniProtKB:P62993|UniProtKB:P63146|UniProtKB:P78358|UniProtKB:P83876|UniProtKB:Q03393|UniProtKB:Q05D60|UniProtKB:Q08493-2|UniProtKB:Q10570|UniProtKB:Q12765-2|UniProtKB:Q13043-2|UniProtKB:Q13064|UniProtKB:Q13158|UniProtKB:Q13541|UniProtKB:Q13637|UniProtKB:Q14119|UniProtKB:Q14192|UniProtKB:Q14240-2|UniProtKB:Q15014|UniProtKB:Q15056-2|UniProtKB:Q15126|UniProtKB:Q15555|UniProtKB:Q15915|UniProtKB:Q32P44|UniProtKB:Q3MJ62|UniProtKB:Q3SXR9|UniProtKB:Q3ZCW2|UniProtKB:Q49AR2|UniProtKB:Q5VVQ6|UniProtKB:Q63HM1|UniProtKB:Q63ZY3150520179 PMID:32296183IntActPMID:32296183
DDIT4LHumanprotein binding enablesIPIUniProtKB:Q68J44|UniProtKB:Q6IPR3|UniProtKB:Q6L8G9|UniProtKB:Q6NVV7|UniProtKB:Q6NZ36-4|UniProtKB:Q6TGC4|UniProtKB:Q6ZYL4|UniProtKB:Q7L273|UniProtKB:Q7L2R6-2|UniProtKB:Q7Z6K5|UniProtKB:Q7Z7H3|UniProtKB:Q86UV6-2|UniProtKB:Q86VK4-3|UniProtKB:Q86WC6|UniProtKB:Q86WQ0|UniProtKB:Q86WT6-2|UniProtKB:Q8IUI8|UniProtKB:Q8IWB6|UniProtKB:Q8IYS1|UniProtKB:Q8IZ13|UniProtKB:Q8N0Z6|UniProtKB:Q8N339|UniProtKB:Q8N371-3|UniProtKB:Q8N9Q2|UniProtKB:Q8NEY1-3|UniProtKB:Q8TCE9|UniProtKB:Q8TDX7|UniProtKB:Q8TEW6|UniProtKB:Q8WUI4-6|UniProtKB:Q8WW01|UniProtKB:Q8WW24|UniProtKB:Q8WXD5|UniProtKB:Q8WY64|UniProtKB:Q8WYJ6|UniProtKB:Q92673|UniProtKB:Q92917|UniProtKB:Q969H8|UniProtKB:Q969Y2|UniProtKB:Q96B23|UniProtKB:Q96B26|UniProtKB:Q96BJ3|UniProtKB:Q96BZ8|UniProtKB:Q96CD2|UniProtKB:Q96G61|UniProtKB:Q96HD9|UniProtKB:Q96IW7|UniProtKB:Q96KB5|UniProtKB:Q96KN1|UniProtKB:Q96LK0|UniProtKB:Q96MF2|UniProtKB:Q96PN8|UniProtKB:Q99633|UniProtKB:Q99697-2|UniProtKB:Q99719|UniProtKB:Q9BRQ3|UniProtKB:Q9BRT3|UniProtKB:Q9BVJ7|UniProtKB:Q9BW92|UniProtKB:Q9BZQ8|UniProtKB:Q9BZR8|UniProtKB:Q9GZM8|UniProtKB:Q9H0E2|UniProtKB:Q9H257-2|UniProtKB:Q9H299|UniProtKB:Q9H503-2|UniProtKB:Q9H773|UniProtKB:Q9HB07|UniProtKB:Q9HBI0|UniProtKB:Q9HC98-4|UniProtKB:Q9HD42|UniProtKB:Q9NP66|UniProtKB:Q9NP86|UniProtKB:Q9NPG2|UniProtKB:Q9NPJ8-3|UniProtKB:Q9NQG5|UniProtKB:Q9NQT4|UniProtKB:Q9NQW7-3|UniProtKB:Q9NR81|UniProtKB:Q9NRQ2|UniProtKB:Q9NU19|UniProtKB:Q9NUJ3|UniProtKB:Q9NWQ9|UniProtKB:Q9P202|UniProtKB:Q9UBH0|UniProtKB:Q9UBL6-2|UniProtKB:Q9UBU8-2|UniProtKB:Q9UBY9|UniProtKB:Q9UFG5|UniProtKB:Q9UH03|UniProtKB:Q9UH92-3|UniProtKB:Q9UHX1-2|UniProtKB:Q9UI47-2|UniProtKB:Q9UIL1-3|UniProtKB:Q9UK45|UniProtKB:Q9ULP0-2|UniProtKB:Q9UPY8|UniProtKB:Q9Y242150520179 PMID:32296183IntActPMID:32296183
DDIT4LHumanprotein binding enablesIPIUniProtKB:P07237|UniProtKB:P62308150520179 PMID:32814053IntActPMID:32814053
DDIT4LHumanprotein binding enablesIPIUniProtKB:Q9UK45150520179 PMID:31515488IntActPMID:31515488
DDIT4LHumanprotein binding enablesIPIUniProtKB:Q9Y263|UniProtKB:Q9Y316|UniProtKB:Q9Y3B2|UniProtKB:Q9Y3C6|UniProtKB:Q9Y4Y9|UniProtKB:Q9Y5B8|UniProtKB:Q9Y6C2-2150520179 PMID:32296183IntActPMID:32296183


#
Reference Title
Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
PMID:12453409   PMID:14702039   PMID:15308555   PMID:15632201   PMID:16189514   PMID:16344560   PMID:17207965   PMID:19268525   PMID:19491193   PMID:19616115   PMID:25416956   PMID:25814554  
PMID:26030842   PMID:27107012   PMID:27107014   PMID:28246202   PMID:28514442   PMID:31515488   PMID:32296183   PMID:32814053   PMID:33961781   PMID:35914814   PMID:36217029  



DDIT4L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384100,185,870 - 100,190,468 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4100,185,870 - 100,190,782 (-)EnsemblGRCh38hg38GRCh38
GRCh374101,107,027 - 101,111,625 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364101,326,050 - 101,330,636 (-)NCBINCBI36Build 36hg18NCBI36
Build 344101,464,206 - 101,468,791NCBI
Celera498,405,052 - 98,409,638 (-)NCBICelera
Cytogenetic Map4q24NCBI
HuRef496,845,264 - 96,850,266 (-)NCBIHuRef
CHM1_14101,083,602 - 101,088,230 (-)NCBICHM1_1
T2T-CHM13v2.04103,501,503 - 103,506,101 (-)NCBIT2T-CHM13v2.0
Ddit4l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393137,329,433 - 137,334,093 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3137,327,373 - 137,334,094 (+)EnsemblGRCm39 Ensembl
GRCm383137,623,672 - 137,628,332 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3137,621,612 - 137,628,333 (+)EnsemblGRCm38mm10GRCm38
MGSCv373137,286,636 - 137,291,296 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363137,561,123 - 137,565,719 (+)NCBIMGSCv36mm8
Celera3144,044,354 - 144,049,027 (+)NCBICelera
Cytogenetic Map3G3NCBI
cM Map363.81NCBI
Ddit4l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82228,800,831 - 228,804,478 (+)NCBIGRCr8
mRatBN7.22226,128,273 - 226,131,044 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2226,128,276 - 226,131,375 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2233,871,078 - 233,873,849 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02231,770,838 - 231,773,609 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02226,635,456 - 226,638,227 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02242,882,219 - 242,885,088 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2242,882,306 - 242,885,131 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02261,430,156 - 261,433,647 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42235,130,697 - 235,133,417 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2218,297,989 - 218,300,862 (+)NCBICelera
Cytogenetic Map2q43NCBI
Ddit4l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554967,618,731 - 7,622,180 (+)NCBIChiLan1.0ChiLan1.0
DDIT4L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2398,264,882 - 98,273,862 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1498,551,071 - 98,560,055 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0492,606,473 - 92,615,421 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14103,268,048 - 103,272,666 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4103,268,048 - 103,272,666 (-)Ensemblpanpan1.1panPan2
DDIT4L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13222,062,630 - 22,067,364 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3222,064,393 - 22,068,562 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3219,827,798 - 19,833,447 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03222,284,651 - 22,290,302 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3222,283,572 - 22,289,375 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13222,261,135 - 22,266,777 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03222,046,970 - 22,052,613 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03217,814,385 - 17,820,036 (+)NCBIUU_Cfam_GSD_1.0
Ddit4l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530119,480,437 - 19,485,057 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365202,823,885 - 2,828,698 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365202,823,896 - 2,828,687 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DDIT4L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8120,371,769 - 120,376,441 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18120,371,724 - 120,376,444 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28129,550,404 - 129,555,119 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DDIT4L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1748,311,147 - 48,315,706 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl748,311,161 - 48,315,630 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603726,785,094 - 26,790,407 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

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Variants in DDIT4L
18 total Variants

1 to 10 of 40 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh38/hg38 4q22.2-32.3(chr4:92913386-165299707)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051775]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051775]|See cases [RCV000051775] Chr4:92913386..165299707 [GRCh38]
Chr4:93834537..166220859 [GRCh37]
Chr4:94053560..166440309 [NCBI36]
Chr4:4q22.2-32.3
pathogenic
GRCh38/hg38 4q22.3-28.3(chr4:96092893-136410207)x3 copy number gain See cases [RCV000051776] Chr4:96092893..136410207 [GRCh38]
Chr4:97014044..137331362 [GRCh37]
Chr4:97233067..137550812 [NCBI36]
Chr4:4q22.3-28.3
pathogenic
GRCh38/hg38 4q21.21-24(chr4:80427023-100855441)x1 copy number loss See cases [RCV000137269] Chr4:80427023..100855441 [GRCh38]
Chr4:81348177..101776598 [GRCh37]
Chr4:81567201..101995621 [NCBI36]
Chr4:4q21.21-24
pathogenic
GRCh38/hg38 4q22.1-24(chr4:92610413-101521991)x1 copy number loss See cases [RCV000140412] Chr4:92610413..101521991 [GRCh38]
Chr4:93531564..102443148 [GRCh37]
Chr4:93750587..102662171 [NCBI36]
Chr4:4q22.1-24
pathogenic
GRCh38/hg38 4q23-24(chr4:100021886-100301285)x1 copy number loss See cases [RCV000143561] Chr4:100021886..100301285 [GRCh38]
Chr4:100943043..101222442 [GRCh37]
Chr4:101162066..101441465 [NCBI36]
Chr4:4q23-24
likely benign|uncertain significance
GRCh37/hg19 4p16.3-q35.2(chr4:12440-190904441)x3 copy number gain See cases [RCV000446653] Chr4:12440..190904441 [GRCh37]
Chr4:4p16.3-q35.2
pathogenic
GRCh37/hg19 4q21.23-24(chr4:85805268-103678797)x1 copy number loss See cases [RCV000445741] Chr4:85805268..103678797 [GRCh37]
Chr4:4q21.23-24
pathogenic
GRCh37/hg19 4p16.3-q35.2(chr4:68346-190957473) copy number gain See cases [RCV000510453] Chr4:68346..190957473 [GRCh37]
Chr4:4p16.3-q35.2
pathogenic
GRCh37/hg19 4q22.1-24(chr4:92201567-103043808)x1 copy number loss See cases [RCV000511194] Chr4:92201567..103043808 [GRCh37]
Chr4:4q22.1-24
pathogenic
GRCh37/hg19 4q22.1-35.2(chr4:93071152-190957473)x3 copy number gain See cases [RCV000510970] Chr4:93071152..190957473 [GRCh37]
Chr4:4q22.1-35.2
pathogenic
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Predicted Target Of
Summary Value
Count of predictions:791
Count of miRNA genes:579
Interacting mature miRNAs:648
Transcripts:ENST00000273990, ENST00000502763, ENST00000513992
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597504822GWAS1600896_Hchronic obstructive pulmonary disease QTL GWAS1600896 (human)7e-09lung integrity trait (VT:0010906)4100187718100187719Human
597384373GWAS1480447_HFEV/FVC ratio QTL GWAS1480447 (human)2e-10FEV/FVC ratioforced expiratory volume to forced vital capacity ratio (CMO:0000241)4100188431100188432Human

SHGC-50253  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374101,108,171 - 101,108,269UniSTSGRCh37
Build 364101,327,194 - 101,327,292RGDNCBI36
Celera498,406,196 - 98,406,294RGD
Cytogenetic Map4q24UniSTS
HuRef496,846,408 - 96,846,506UniSTS
TNG Radiation Hybrid Map462026.0UniSTS
SHGC-8633  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374101,107,765 - 101,107,913UniSTSGRCh37
Build 364101,326,788 - 101,326,936RGDNCBI36
Celera498,405,790 - 98,405,938RGD
Cytogenetic Map4q24UniSTS
HuRef496,846,002 - 96,846,150UniSTS
TNG Radiation Hybrid Map462041.0UniSTS
D4S2493E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374101,108,313 - 101,108,395UniSTSGRCh37
Build 364101,327,336 - 101,327,418RGDNCBI36
Celera498,406,338 - 98,406,420RGD
Cytogenetic Map4q24UniSTS
HuRef496,846,550 - 96,846,632UniSTS
Stanford-G3 RH Map45644.0UniSTS
GeneMap99-G3 RH Map45572.0UniSTS
SHGC-24757  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374101,107,062 - 101,107,190UniSTSGRCh37
Build 364101,326,085 - 101,326,213RGDNCBI36
Celera498,405,087 - 98,405,215RGD
Cytogenetic Map4q24UniSTS
HuRef496,845,299 - 96,845,427UniSTS
TNG Radiation Hybrid Map462071.0UniSTS
GeneMap99-GB4 RH Map4494.64UniSTS
Whitehead-RH Map4527.9UniSTS
GeneMap99-G3 RH Map45572.0UniSTS
Ddit4l  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374101,108,981 - 101,109,057UniSTSGRCh37
Celera498,407,006 - 98,407,082UniSTS
HuRef496,847,217 - 96,847,293UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2348 2787 2232 4926 1680 2266 6 584 1627 425 2240 6886 6157 40 3706 1 833 1713 1572 172 1



Ensembl Acc Id: ENST00000273990   ⟹   ENSP00000354830
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4100,185,870 - 100,190,468 (-)Ensembl
Ensembl Acc Id: ENST00000502763   ⟹   ENSP00000427301
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4100,187,728 - 100,190,304 (-)Ensembl
Ensembl Acc Id: ENST00000513992   ⟹   ENSP00000427040
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4100,187,875 - 100,190,782 (-)Ensembl
RefSeq Acc Id: NM_145244   ⟹   NP_660287
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384100,185,870 - 100,190,468 (-)NCBI
GRCh374101,106,267 - 101,111,939 (-)NCBI
Build 364101,326,050 - 101,330,636 (-)NCBI Archive
Celera498,405,052 - 98,409,638 (-)RGD
HuRef496,845,264 - 96,850,266 (-)ENTREZGENE
CHM1_14101,083,602 - 101,088,230 (-)NCBI
T2T-CHM13v2.04103,501,503 - 103,506,101 (-)NCBI
Sequence:
1 to 10 of 10 rows
Protein RefSeqs NP_660287 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH13592 (Get FASTA)   NCBI Sequence Viewer  
  BAC04315 (Get FASTA)   NCBI Sequence Viewer  
  BAG35770 (Get FASTA)   NCBI Sequence Viewer  
  CAD28403 (Get FASTA)   NCBI Sequence Viewer  
  CAI46176 (Get FASTA)   NCBI Sequence Viewer  
  EAX06119 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000354830
  ENSP00000354830.2
GenBank Protein Q96D03 (Get FASTA)   NCBI Sequence Viewer  
1 to 10 of 10 rows
RefSeq Acc Id: NP_660287   ⟸   NM_145244
- UniProtKB: B2R7C3 (UniProtKB/Swiss-Prot),   Q96D03 (UniProtKB/Swiss-Prot),   D6RJ99 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000427301   ⟸   ENST00000502763
Ensembl Acc Id: ENSP00000354830   ⟸   ENST00000273990
Ensembl Acc Id: ENSP00000427040   ⟸   ENST00000513992

Name Modeler Protein Id AA Range Protein Structure
AF-Q96D03-F1-model_v2 AlphaFold Q96D03 1-193 view protein structure

RGD ID:6868130
Promoter ID:EPDNEW_H7230
Type:initiation region
Name:DDIT4L_1
Description:DNA damage inducible transcript 4 like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh384100,190,468 - 100,190,528EPDNEW


1 to 22 of 22 rows
Database
Acc Id
Source(s)
COSMIC DDIT4L COSMIC
Ensembl Genes ENSG00000145358 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000273990 ENTREZGENE
  ENST00000273990.6 UniProtKB/Swiss-Prot
Gene3D-CATH 3.90.470.40 UniProtKB/Swiss-Prot
GTEx ENSG00000145358 GTEx
HGNC ID HGNC:30555 ENTREZGENE
Human Proteome Map DDIT4L Human Proteome Map
InterPro RTP801-like UniProtKB/Swiss-Prot
  RTP801-like_C_sf UniProtKB/Swiss-Prot
KEGG Report hsa:115265 UniProtKB/Swiss-Prot
NCBI Gene 115265 ENTREZGENE
OMIM 607730 OMIM
PANTHER DNA DAMAGE-INDUCIBLE TRANSCRIPT 4-LIKE PROTEIN UniProtKB/Swiss-Prot
  PTHR12478 UniProtKB/Swiss-Prot
Pfam RTP801_C UniProtKB/Swiss-Prot
PharmGKB PA128394749 PharmGKB
UniProt B2R7C3 ENTREZGENE
  D6RD49_HUMAN UniProtKB/TrEMBL
  D6RJ99 ENTREZGENE, UniProtKB/TrEMBL
  DDT4L_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary B2R7C3 UniProtKB/Swiss-Prot
1 to 22 of 22 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-24 DDIT4L  DNA damage inducible transcript 4 like    DNA-damage-inducible transcript 4-like  Symbol and/or name change 5135510 APPROVED