Ddit4l (DNA-damage-inducible transcript 4-like) - Rat Genome Database

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Gene: Ddit4l (DNA-damage-inducible transcript 4-like) Mus musculus
Analyze
Symbol: Ddit4l
Name: DNA-damage-inducible transcript 4-like
RGD ID: 733457
MGI Page MGI
Description: Predicted to be involved in negative regulation of signal transduction. Predicted to be located in cytoplasm. Is expressed in several structures, including brain; eye; frenulum; lip; and reproductive system. Orthologous to human DDIT4L (DNA damage inducible transcript 4 like).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1700037B15Rik; 1700108M02Rik; DNA damage-inducible transcript 4-like protein; DNA-damage-inducible transcript 4-like protein; HIF-1 responsive protein RTP801-like; REDD; REDD2; RTP8; RTP801L; skeletal muscle hindlimb suspension 1; Smhs1; soleus muscle atrophied after hindlimb suspension protein 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393137,329,433 - 137,334,093 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3137,327,373 - 137,334,094 (+)EnsemblGRCm39 Ensembl
GRCm383137,623,672 - 137,628,332 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3137,621,612 - 137,628,333 (+)EnsemblGRCm38mm10GRCm38
MGSCv373137,286,636 - 137,291,296 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363137,561,123 - 137,565,719 (+)NCBIMGSCv36mm8
Celera3144,044,354 - 144,049,027 (+)NCBICelera
Cytogenetic Map3G3NCBI
cM Map363.81NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (EXP,ISO)
1H-pyrazole  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-acetamidofluorene  (EXP)
2-amino-2-deoxy-D-glucopyranose  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-amino-2,6-dinitrotoluene  (ISO)
4-hydroxyphenyl retinamide  (EXP)
7,12-dimethyltetraphene  (EXP)
acrylamide  (EXP)
aflatoxin B1  (EXP,ISO)
aldehydo-D-glucosamine  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (EXP)
beta-D-glucosamine  (ISO)
bisphenol A  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
cadmium sulfate  (EXP)
carbamazepine  (ISO)
cefaloridine  (ISO)
chloroprene  (EXP)
choline  (EXP)
chrysene  (EXP)
cisplatin  (EXP,ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumarin  (ISO)
Cuprizon  (ISO)
curcumin  (ISO)
cyclosporin A  (ISO)
dibenz[a,h]anthracene  (EXP)
dibutyl phthalate  (ISO)
diethyl maleate  (EXP)
diethylstilbestrol  (ISO)
disodium selenite  (ISO)
dorsomorphin  (ISO)
endosulfan  (ISO)
entinostat  (ISO)
ethanol  (EXP)
flutamide  (ISO)
folic acid  (EXP)
furan  (EXP,ISO)
glycidol  (ISO)
hydroxyurea  (EXP)
inulin  (EXP)
L-methionine  (EXP)
leflunomide  (EXP)
lipopolysaccharide  (ISO)
menadione  (EXP)
metformin  (ISO)
methapyrilene  (ISO)
methylmercury chloride  (ISO)
microcystin-LR  (EXP)
mitomycin C  (EXP)
mono(2-ethylhexyl) phthalate  (ISO)
N-methyl-N-nitrosourea  (EXP)
N-nitrosodiethylamine  (EXP,ISO)
nickel atom  (ISO)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (EXP)
phenylmercury acetate  (ISO)
pioglitazone  (ISO)
pirinixic acid  (EXP)
quercetin  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sirolimus  (ISO)
sodium arsenite  (EXP)
Soman  (ISO)
sotorasib  (ISO)
sunitinib  (ISO)
tacrolimus hydrate  (ISO)
testosterone  (EXP)
tetrachloromethane  (EXP,ISO)
tetraphene  (EXP)
thioacetamide  (ISO)
titanium dioxide  (EXP)
trametinib  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
trimellitic anhydride  (EXP)
triphenyl phosphate  (ISO)
Triptolide  (EXP)
triptonide  (EXP)
valproic acid  (ISO)
zearalenone  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Identification of a novel hypoxia-inducible factor 1-responsive gene, RTP801, involved in apoptosis. Shoshani T, etal., Mol Cell Biol 2002 Apr;22(7):2283-93.
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:15607738   PMID:15632201   PMID:15988001   PMID:16141072   PMID:16141073   PMID:16829211   PMID:18988856   PMID:19129461  
PMID:21267068   PMID:21884692   PMID:22797524   PMID:24412152   PMID:24952961   PMID:25257176   PMID:27597886   PMID:28246202   PMID:28797033   PMID:33903225   PMID:35831953   PMID:36575170  


Genomics

Comparative Map Data
Ddit4l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393137,329,433 - 137,334,093 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3137,327,373 - 137,334,094 (+)EnsemblGRCm39 Ensembl
GRCm383137,623,672 - 137,628,332 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3137,621,612 - 137,628,333 (+)EnsemblGRCm38mm10GRCm38
MGSCv373137,286,636 - 137,291,296 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363137,561,123 - 137,565,719 (+)NCBIMGSCv36mm8
Celera3144,044,354 - 144,049,027 (+)NCBICelera
Cytogenetic Map3G3NCBI
cM Map363.81NCBI
DDIT4L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384100,185,870 - 100,190,468 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4100,185,870 - 100,190,782 (-)EnsemblGRCh38hg38GRCh38
GRCh374101,107,027 - 101,111,625 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364101,326,050 - 101,330,636 (-)NCBINCBI36Build 36hg18NCBI36
Build 344101,464,206 - 101,468,791NCBI
Celera498,405,052 - 98,409,638 (-)NCBICelera
Cytogenetic Map4q24NCBI
HuRef496,845,264 - 96,850,266 (-)NCBIHuRef
CHM1_14101,083,602 - 101,088,230 (-)NCBICHM1_1
T2T-CHM13v2.04103,501,503 - 103,506,101 (-)NCBIT2T-CHM13v2.0
Ddit4l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82228,800,831 - 228,804,478 (+)NCBIGRCr8
mRatBN7.22226,128,273 - 226,131,044 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2226,128,276 - 226,131,375 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2233,871,078 - 233,873,849 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02231,770,838 - 231,773,609 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02226,635,456 - 226,638,227 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02242,882,219 - 242,885,088 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2242,882,306 - 242,885,131 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02261,430,156 - 261,433,647 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42235,130,697 - 235,133,417 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2218,297,989 - 218,300,862 (+)NCBICelera
Cytogenetic Map2q43NCBI
Ddit4l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554967,618,731 - 7,622,180 (+)NCBIChiLan1.0ChiLan1.0
DDIT4L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2398,264,882 - 98,273,862 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1498,551,071 - 98,560,055 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0492,606,473 - 92,615,421 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14103,268,048 - 103,272,666 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4103,268,048 - 103,272,666 (-)Ensemblpanpan1.1panPan2
DDIT4L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13222,062,630 - 22,067,364 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3222,064,393 - 22,068,562 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3219,827,798 - 19,833,447 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03222,284,651 - 22,290,302 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3222,283,572 - 22,289,375 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13222,261,135 - 22,266,777 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03222,046,970 - 22,052,613 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03217,814,385 - 17,820,036 (+)NCBIUU_Cfam_GSD_1.0
Ddit4l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530119,480,437 - 19,485,057 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365202,823,885 - 2,828,698 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365202,823,896 - 2,828,687 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DDIT4L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8120,371,769 - 120,376,441 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18120,371,724 - 120,376,444 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28129,550,404 - 129,555,119 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DDIT4L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1748,311,147 - 48,315,706 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl748,311,161 - 48,315,630 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603726,785,094 - 26,790,407 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Ddit4l
176 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:802
Count of miRNA genes:535
Interacting mature miRNAs:613
Transcripts:ENSMUST00000053855, ENSMUST00000165845, ENSMUST00000167564
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226732Tibmd3_mtibia midshaft diameter 3, 10 week (mouse)396607316147805636Mouse
1300752Ap6q_malcohol preference 6 QTL (mouse)Not determined3100372912147045722Mouse
1300619Cdcs1_mcytokine deficiency colitis susceptibility 1 (mouse)Not determined3109834882143835005Mouse
27226733Tibmd6_mtibia midshaft diameter 6, 16 week (mouse)3101307316149805637Mouse
1302093Orgwq5_morgan weight QTL 5 (mouse)Not determined3107376936147304689Mouse
4142178Ctrq2_mC. trachomatis resistance QTL 2 (mouse)Not determined389139967137453008Mouse
1301381Bomb1_mbone marrow pre-B 1 (mouse)Not determined3111133243145133417Mouse
10043919Afpq8_mabdominal fat percent QTL 8 (mouse)Not determined3119057332153057456Mouse
10412240Alpq6_malcohol preference QTL 6 (mouse)Not determined3120772078154772078Mouse
11039523Tbbr1_mTrypanosoma brucei brucei response 1 (mouse)3130849375159745316Mouse
10412120Ccs3_mcolon cancer susceptibility 3 (mouse)Not determined3131754536146017669Mouse
4141935Tgq15_mtriglyceride QTL 15 (mouse)Not determined119318586153318586Mouse
1302151Lprm2_mlymphoproliferation modifier 2 (mouse)Not determined3119778857153779044Mouse
4142449Tgq14_mtriglyceride QTL 14 (mouse)Not determined119318586153318586Mouse
1301563Alcp3_malcohol preference locus 3 (mouse)Not determined3130736935159745316Mouse
1301528Loco1_mlocomotor activity 1 (mouse)Not determined3133461893159745316Mouse
1558868Ses9_msalmonella enteritidis susceptibility 9 (mouse)Not determined3119057332153057456Mouse
1301347Fpli_mfasting plasma insulin (mouse)Not determined3126460514159745316Mouse
1301100Bdt2_mbone density traits 2 (mouse)Not determined3114736617148736784Mouse
4142245Pstc1_mperiosteal circumference 1 (mouse)Not determined3126270248159745316Mouse
1301218Letohc1_mlow ethanol consumption 1 (mouse)Not determined3126352986159745316Mouse
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
1301805Mors2_mmodifier of obesity related sterility 2 (mouse)Not determined3103482659137482783Mouse
1300753Eae10_msusceptibility to experimental allergic encephalomyelitis 10 (mouse)Not determined3131736617148451178Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse

Markers in Region
UniSTS:234835  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383137,626,180 - 137,626,442UniSTSGRCm38
MGSCv373137,289,144 - 137,289,406UniSTSGRCm37
Celera3144,046,857 - 144,047,119UniSTS
Cytogenetic Map3G3UniSTS
Ddit4l  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383137,626,233 - 137,626,309UniSTSGRCm38
MGSCv373137,289,197 - 137,289,273UniSTSGRCm37
Celera3144,046,910 - 144,046,986UniSTS
Cytogenetic Map3G3UniSTS
cM Map3 UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000053855   ⟹   ENSMUSP00000058896
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3137,329,433 - 137,334,094 (+)Ensembl
GRCm38.p6 Ensembl3137,623,672 - 137,628,333 (+)Ensembl
RefSeq Acc Id: ENSMUST00000165845   ⟹   ENSMUSP00000127567
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3137,329,798 - 137,331,935 (+)Ensembl
GRCm38.p6 Ensembl3137,624,037 - 137,626,174 (+)Ensembl
RefSeq Acc Id: ENSMUST00000167564
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3137,327,373 - 137,331,160 (+)Ensembl
GRCm38.p6 Ensembl3137,621,612 - 137,625,399 (+)Ensembl
RefSeq Acc Id: NM_030143   ⟹   NP_084419
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393137,329,433 - 137,334,093 (+)NCBI
GRCm383137,623,672 - 137,628,332 (+)ENTREZGENE
MGSCv373137,286,636 - 137,291,296 (+)RGD
Celera3144,044,354 - 144,049,027 (+)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_084419   ⟸   NM_030143
- UniProtKB: Q8VD49 (UniProtKB/Swiss-Prot),   Q8C0Z7 (UniProtKB/Swiss-Prot),   Q9CQV2 (UniProtKB/Swiss-Prot),   Q8VHZ5 (UniProtKB/Swiss-Prot),   B2RVG4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000058896   ⟸   ENSMUST00000053855
RefSeq Acc Id: ENSMUSP00000127567   ⟸   ENSMUST00000165845

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8VHZ5-F1-model_v2 AlphaFold Q8VHZ5 1-193 view protein structure

Promoters
RGD ID:6833639
Promoter ID:MM_KWN:36210
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:UC008RMN.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv363137,285,996 - 137,287,097 (+)MPROMDB
RGD ID:6882456
Promoter ID:EPDNEW_M4679
Type:initiation region
Name:Ddit4l_1
Description:Mus musculus DNA-damage-inducible transcript 4-like , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383137,623,736 - 137,623,796EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1920534 AgrOrtholog
Ensembl Genes ENSMUSG00000046818 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000053855 ENTREZGENE
  ENSMUST00000053855.8 UniProtKB/Swiss-Prot
  ENSMUST00000165845.2 UniProtKB/TrEMBL
Gene3D-CATH 3.90.470.40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro RTP801-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RTP801-like_C_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:73284 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1920534 ENTREZGENE
NCBI Gene 73284 ENTREZGENE
PANTHER DNA DAMAGE-INDUCIBLE TRANSCRIPT 4-LIKE PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12478 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam RTP801_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ddit4l PhenoGen
UniProt B2RVG4 ENTREZGENE, UniProtKB/TrEMBL
  DDT4L_MOUSE UniProtKB/Swiss-Prot
  E9Q253_MOUSE UniProtKB/TrEMBL
  Q8C0Z7 ENTREZGENE
  Q8VD49 ENTREZGENE
  Q8VHZ5 ENTREZGENE
  Q9CQV2 ENTREZGENE
UniProt Secondary Q8C0Z7 UniProtKB/Swiss-Prot
  Q8VD49 UniProtKB/Swiss-Prot
  Q9CQV2 UniProtKB/Swiss-Prot