Tsacc (TSSK6 activating co-chaperone) - Rat Genome Database

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Gene: Tsacc (TSSK6 activating co-chaperone) Mus musculus
Analyze
Symbol: Tsacc
Name: TSSK6 activating co-chaperone
RGD ID: 1331902
MGI Page MGI
Description: Predicted to enable Hsp70 protein binding activity; protein kinase binding activity; and protein kinase inhibitor activity. Predicted to act upstream of or within positive regulation of protein kinase activity. Located in cytoplasm. Orthologous to human TSACC (TSSK6 activating cochaperone).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1700021C14Rik; MGC130252; SIP; SSTK-interacting protein; TSSK6-activating co-chaperone protein; uncharacterized protein C1orf182 homolog
RGD Orthologs
Human
Rat
Bonobo
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39388,190,059 - 88,204,306 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl388,190,064 - 88,204,306 (-)EnsemblGRCm39 Ensembl
GRCm38388,282,752 - 88,296,999 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl388,282,757 - 88,296,999 (-)EnsemblGRCm38mm10GRCm38
MGSCv37388,086,682 - 88,100,760 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36388,368,677 - 88,382,870 (-)NCBIMGSCv36mm8
Celera388,322,340 - 88,336,408 (-)NCBICelera
Cytogenetic Map3F1NCBI
cM Map338.79NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
TsaccMouseCharcot-Marie-Tooth disease type 2  ISORGD:16047568554872ClinVar Annotator: match by term: Charcot-Marie-Tooth disease type 2ClinVarPMID:18585512|PMID:18926329|PMID:28492532|PMID:29845577
TsaccMousegastrointestinal stromal tumor  ISORGD:16047568554872ClinVar Annotator: match by term: Gastrointestinal stromal tumorClinVarPMID:28492532
TsaccMouseimmunodeficiency 42  ISORGD:16047568554872ClinVar Annotator: match by term: Autosomal recessive mendelian susceptibility to mycobacterial diseases due to complete more ...ClinVarPMID:28492532
TsaccMouseMHC class II deficiency  ISORGD:16047568554872ClinVar Annotator: match by term: MHC class II deficiencyClinVarPMID:28492532
TsaccMouseparathyroid carcinoma  ISORGD:16047568554872ClinVar Annotator: match by term: Parathyroid carcinomaClinVarPMID:28492532
TsaccMousesevere congenital neutropenia 3  ISORGD:16047568554872ClinVar Annotator: match by term: Kostmann syndromeClinVarPMID:28492532
TsaccMousesevere congenital neutropenia 5  ISORGD:16047568554872ClinVar Annotator: match by term: Congenital neutropenia-myelofibrosis-nephromegaly syndromeClinVarPMID:28492532

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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
TsaccMouse1,2-dimethylhydrazine multiple interactionsEXP 6480464[1,2-Dimethylhydrazine co-treated with Folic Acid] results in increased expression of TSACC mRNACTDPMID:22206623
TsaccMouse2,3,7,8-tetrachlorodibenzodioxine decreases expressionISORGD:16047566480464Tetrachlorodibenzodioxin results in decreased expression of TSACC mRNACTDPMID:27913140
TsaccMouse2,3,7,8-tetrachlorodibenzodioxine increases expressionISORGD:13049536480464Tetrachlorodibenzodioxin results in increased expression of TSACC mRNACTDPMID:33387578
TsaccMouseacrylamide decreases expressionISORGD:13049536480464Acrylamide results in decreased expression of TSACC mRNACTDPMID:28959563
TsaccMousebenzo[a]pyrene affects expressionISORGD:16047566480464Benzo(a)pyrene affects the expression of TSACC mRNACTDPMID:22316170
TsaccMousebisphenol A decreases expressionEXP 6480464bisphenol A results in decreased expression of TSACC mRNACTDPMID:32156529
TsaccMousebisphenol A increases expressionEXP 6480464bisphenol A results in increased expression of TSACC mRNACTDPMID:38074096
TsaccMousecadmium dichloride increases methylationISORGD:13049536480464Cadmium Chloride results in increased methylation of TSACC promoterCTDPMID:22457795
TsaccMousecadmium dichloride decreases expressionISORGD:16047566480464Cadmium Chloride results in decreased expression of TSACC mRNACTDPMID:38382870
TsaccMousecarbon nanotube decreases expressionEXP 6480464Nanotubes, Carbon analog results in decreased expression of TSACC mRNA; Nanotubes, Carbon results in decreased more ...CTDPMID:25554681
TsaccMousecisplatin increases expressionISORGD:16047566480464Cisplatin results in increased expression of TSACC mRNACTDPMID:27392435
TsaccMousefolic acid multiple interactionsEXP 6480464[1,2-Dimethylhydrazine co-treated with Folic Acid] results in increased expression of TSACC mRNACTDPMID:22206623
TsaccMousegentamycin decreases expressionISORGD:13049536480464Gentamicins results in decreased expression of TSACC mRNACTDPMID:33387578
TsaccMouselipopolysaccharide multiple interactionsISORGD:16047566480464[S-(1,2-dichlorovinyl)cysteine co-treated with Lipopolysaccharides] results in increased expression of TSACC mRNACTDPMID:35811015
TsaccMouseokadaic acid increases expressionISORGD:16047566480464Okadaic Acid results in increased expression of TSACC mRNACTDPMID:38832940
TsaccMouseperfluorooctane-1-sulfonic acid multiple interactionsEXP 6480464[perfluorooctane sulfonic acid co-treated with Pectins] results in increased expression of TSACC mRNACTDPMID:36331819
TsaccMouseS-(1,2-dichlorovinyl)-L-cysteine multiple interactionsISORGD:16047566480464[S-(1,2-dichlorovinyl)cysteine co-treated with Lipopolysaccharides] results in increased expression of TSACC mRNACTDPMID:35811015
TsaccMousesodium arsenite decreases expressionEXP 6480464sodium arsenite results in decreased expression of TSACC mRNACTDPMID:37682722
TsaccMousetrichloroethene increases expressionISORGD:13049536480464Trichloroethylene results in increased expression of TSACC mRNACTDPMID:33387578
TsaccMouseurethane decreases expressionISORGD:16047566480464Urethane results in decreased expression of TSACC mRNACTDPMID:28818685

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Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
TsaccMousepositive regulation of protein kinase activity acts_upstream_of_or_withinISORefSeq:NP_6532282290270 MGIGO_REF:0000008

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
TsaccMousecytoplasm is_active_inIBAPANTHER:PTN002204710|MGI:19241772290270 GO_CentralGO_REF:0000033
TsaccMousecytoplasm located_inIDA 2290270 PMID:20829357MGIPMID:20829357

Molecular Function
1 to 9 of 9 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
TsaccMouseHsp70 protein binding enablesISORefSeq:NP_6532282290270 MGIGO_REF:0000008
TsaccMouseprotein binding enablesISOUniProtKB:O15409|UniProtKB:Q8N4859068941 PMID:32296183IntActPMID:32296183
TsaccMouseprotein binding enablesISOUniProtKB:O14901|UniProtKB:P02489|UniProtKB:Q13153|UniProtKB:Q86V38|UniProtKB:Q9BVL29068941 PMID:32814053IntActPMID:32814053
TsaccMouseprotein binding enablesISOUniProtKB:O154099068941 PMID:25416956IntActPMID:25416956
TsaccMouseprotein kinase binding enablesISORefSeq:NP_6532282290270 MGIGO_REF:0000008
TsaccMouseprotein kinase inhibitor activity enablesISORefSeq:NP_6532282290270 MGIGO_REF:0000008
TsaccMouseprotein-folding chaperone binding enablesISOUniProtKB:Q96A042290270 GO_CentralGO_REF:0000119
TsaccMouseprotein-folding chaperone binding enablesISSUniProtKB:Q96A042290270 UniProtGO_REF:0000024
TsaccMouseprotein-folding chaperone binding enablesIBAPANTHER:PTN002204710|UniProtKB:Q96A042290270 GO_CentralGO_REF:0000033
1 to 9 of 9 rows


#
Reference Title
Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11125038   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:15489334   PMID:16141072  
PMID:16141073   PMID:16602821   PMID:17967808   PMID:18799693   PMID:20829357   PMID:21873635  



Tsacc
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39388,190,059 - 88,204,306 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl388,190,064 - 88,204,306 (-)EnsemblGRCm39 Ensembl
GRCm38388,282,752 - 88,296,999 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl388,282,757 - 88,296,999 (-)EnsemblGRCm38mm10GRCm38
MGSCv37388,086,682 - 88,100,760 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36388,368,677 - 88,382,870 (-)NCBIMGSCv36mm8
Celera388,322,340 - 88,336,408 (-)NCBICelera
Cytogenetic Map3F1NCBI
cM Map338.79NCBI
TSACC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381156,337,314 - 156,346,995 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1156,337,314 - 156,346,995 (+)EnsemblGRCh38hg38GRCh38
GRCh371156,307,105 - 156,316,786 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361154,573,727 - 154,583,410 (+)NCBINCBI36Build 36hg18NCBI36
Celera1129,380,041 - 129,389,722 (+)NCBICelera
Cytogenetic Map1q22NCBI
HuRef1127,667,393 - 127,677,074 (+)NCBIHuRef
CHM1_11157,703,460 - 157,713,141 (+)NCBICHM1_1
T2T-CHM13v2.01155,475,925 - 155,485,606 (+)NCBIT2T-CHM13v2.0
Tsacc
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82176,053,672 - 176,063,412 (-)NCBIGRCr8
mRatBN7.22173,755,841 - 173,765,564 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2173,753,786 - 173,765,404 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2180,900,493 - 180,910,017 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02178,922,850 - 178,932,375 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02173,522,690 - 173,532,236 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02187,659,103 - 187,668,781 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2187,659,106 - 187,668,708 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02207,062,118 - 207,071,794 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42180,371,102 - 180,380,656 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12180,321,214 - 180,330,802 (-)NCBI
Celera2167,701,813 - 167,711,196 (-)NCBICelera
Cytogenetic Map2q34NCBI
TSACC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2193,499,868 - 93,508,705 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1193,231,792 - 93,240,630 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01131,679,671 - 131,709,720 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11135,509,008 - 135,516,918 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1135,509,160 - 135,516,912 (+)Ensemblpanpan1.1panPan2
Tsacc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505826,523,970 - 26,530,686 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365805,559,663 - 5,561,051 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365805,559,624 - 5,561,051 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TSACC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl493,725,531 - 93,728,761 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1493,725,672 - 93,735,029 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24102,427,767 - 102,436,021 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TSACC
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1207,509,738 - 7,518,637 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660386,810,117 - 6,819,459 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

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Variants in Tsacc
739 total Variants

Predicted Target Of
Summary Value
Count of predictions:319
Count of miRNA genes:181
Interacting mature miRNAs:188
Transcripts:ENSMUST00000010682, ENSMUST00000107556, ENSMUST00000123536
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 38 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
26884378Skwq6_mskull length QTL 6, 10 week (mouse)351907421102307316Mouse
1301971Cia5_mcollagen induced arthritis QTL 5 (mouse)Not determined366046658100046795Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379548730113548837Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
26884380Skwq1_mskull length QTL 1, 5 week (mouse)343954435101607316Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse

1 to 10 of 38 rows






Ensembl Acc Id: ENSMUST00000010682   ⟹   ENSMUSP00000010682
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl388,190,067 - 88,204,145 (-)Ensembl
GRCm38.p6 Ensembl388,282,760 - 88,296,838 (-)Ensembl
Ensembl Acc Id: ENSMUST00000107556   ⟹   ENSMUSP00000103180
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl388,190,064 - 88,204,306 (-)Ensembl
GRCm38.p6 Ensembl388,282,757 - 88,296,999 (-)Ensembl
Ensembl Acc Id: ENSMUST00000123536
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl388,202,231 - 88,204,203 (-)Ensembl
GRCm38.p6 Ensembl388,294,924 - 88,296,896 (-)Ensembl
RefSeq Acc Id: NM_001357024   ⟹   NP_001343953
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39388,190,061 - 88,204,306 (-)NCBI
GRCm38388,282,754 - 88,296,999 (-)NCBI
Sequence:
RefSeq Acc Id: NM_029801   ⟹   NP_084077
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39388,190,061 - 88,204,145 (-)NCBI
GRCm38388,282,754 - 88,296,838 (-)NCBI
MGSCv37388,086,682 - 88,100,760 (-)RGD
Celera388,322,340 - 88,336,408 (-)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_030252882   ⟹   XP_030108742
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39388,190,059 - 88,204,267 (-)NCBI
GRCm38388,282,752 - 88,296,911 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030252883   ⟹   XP_030108743
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39388,190,059 - 88,202,729 (-)NCBI
GRCm38388,282,752 - 88,295,421 (-)NCBI
Sequence:
RefSeq Acc Id: NP_084077   ⟸   NM_029801
- UniProtKB: Q9DA44 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030108742   ⟸   XM_030252882
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030108743   ⟸   XM_030252883
- Peptide Label: isoform X2
RefSeq Acc Id: NP_001343953   ⟸   NM_001357024
- UniProtKB: Q9DA44 (UniProtKB/Swiss-Prot)
Ensembl Acc Id: ENSMUSP00000103180   ⟸   ENSMUST00000107556

Name Modeler Protein Id AA Range Protein Structure
AF-Q9DA44-F1-model_v2 AlphaFold Q9DA44 1-124 view protein structure

RGD ID:6833166
Promoter ID:MM_KWN:34833
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_009836,   NM_029801,   OTTMUST00000052274,   OTTMUST00000052276,   UC008PUL.1,   UC008PUM.1,   UC008PUN.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36388,099,871 - 88,101,327 (-)MPROMDB
RGD ID:6881112
Promoter ID:EPDNEW_M4007
Type:initiation region
Name:Tsacc_1
Description:Mus musculus TSSK6 activating co-chaperone , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38388,296,902 - 88,296,962EPDNEW


1 to 14 of 14 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000010538 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000010682 ENTREZGENE
  ENSMUST00000010682.4 UniProtKB/Swiss-Prot
  ENSMUST00000107556 ENTREZGENE
  ENSMUST00000107556.10 UniProtKB/Swiss-Prot
InterPro SSTK-IP UniProtKB/Swiss-Prot
KEGG Report mmu:76927 UniProtKB/Swiss-Prot
MGD MGI:1924177 ENTREZGENE
NCBI Gene 76927 ENTREZGENE
PANTHER PTHR37368 UniProtKB/Swiss-Prot
  TSSK6-ACTIVATING CO-CHAPERONE PROTEIN UniProtKB/Swiss-Prot
Pfam SSTK-IP UniProtKB/Swiss-Prot
PhenoGen Tsacc PhenoGen
UniProt Q9DA44 ENTREZGENE, UniProtKB/Swiss-Prot
1 to 14 of 14 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-09-19 Tsacc  TSSK6 activating co-chaperone  1700021C14Rik  RIKEN cDNA 1700021C14 gene  Symbol and/or name change 5135510 APPROVED