IL17RB (interleukin 17 receptor B) - Rat Genome Database

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Gene: IL17RB (interleukin 17 receptor B) Homo sapiens
Analyze
Symbol: IL17RB
Name: interleukin 17 receptor B
RGD ID: 1322830
HGNC Page HGNC:18015
Description: Predicted to enable interleukin-17 receptor activity. Predicted to be involved in defense response. Predicted to act upstream of or within positive regulation of inflammatory response; positive regulation of interleukin-13 production; and positive regulation of interleukin-5 production. Located in intracellular membrane-bounded organelle and plasma membrane.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: CRL4; cytokine receptor CRL4; cytokine receptor-like 4; EVI27; IL-17 receptor B; IL-17 receptor homolog 1; IL-17B receptor; IL-17RB; IL-17Rh1; IL17BR; IL17RH1; interleukin 17 receptor homolog 1; interleukin 17B receptor; interleukin-17 receptor B; interleukin-17B receptor; MGC5245
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38353,846,568 - 53,865,794 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl353,846,568 - 53,865,794 (+)EnsemblGRCh38hg38GRCh38
GRCh37353,880,595 - 53,899,821 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36353,855,617 - 53,874,867 (+)NCBINCBI36Build 36hg18NCBI36
Build 34353,855,611 - 53,874,866NCBI
Celera353,847,857 - 53,867,109 (+)NCBICelera
Cytogenetic Map3p21.1NCBI
HuRef353,929,093 - 53,948,345 (+)NCBIHuRef
CHM1_1353,832,215 - 53,851,465 (+)NCBICHM1_1
T2T-CHM13v2.0353,879,806 - 53,899,034 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
asthma  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(-)-demecolcine  (EXP)
(1->4)-beta-D-glucan  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,3-dimethoxynaphthalene-1,4-dione  (EXP)
2,4,6-trinitrotoluene  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (ISO)
4-hydroxyphenyl retinamide  (ISO)
acetamide  (ISO)
acrylamide  (ISO)
all-trans-retinoic acid  (EXP)
alpha-Zearalanol  (ISO)
belinostat  (EXP)
benzo[a]pyrene  (EXP)
beta-lapachone  (EXP)
bisphenol A  (EXP,ISO)
bromobenzene  (ISO)
Butylparaben  (EXP)
cadmium dichloride  (ISO)
calcitriol  (EXP)
capecitabine  (EXP)
carbon nanotube  (ISO)
CGP 52608  (EXP)
choline  (ISO)
chromium atom  (EXP)
cisplatin  (EXP)
copper(II) sulfate  (EXP)
coumestrol  (EXP)
cyclosporin A  (EXP,ISO)
dichloroacetic acid  (ISO)
dioxygen  (EXP)
doxifluridine  (EXP)
entinostat  (EXP)
epoxiconazole  (ISO)
ethyl methanesulfonate  (EXP)
fenofibrate  (ISO)
ferulic acid  (ISO)
folic acid  (ISO)
formaldehyde  (EXP)
fulvestrant  (EXP)
genistein  (ISO)
ibuprofen  (ISO)
imiquimod  (ISO)
inulin  (ISO)
L-methionine  (ISO)
mercury atom  (EXP)
mercury(0)  (EXP)
metformin  (ISO)
methotrexate  (EXP)
methyl methanesulfonate  (EXP)
methylparaben  (EXP)
N-nitrosodimethylamine  (EXP)
orphenadrine  (ISO)
paclitaxel  (EXP)
paracetamol  (EXP,ISO)
paraquat  (ISO)
PCB138  (ISO)
perfluorononanoic acid  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
pirinixic acid  (ISO)
potassium dichromate  (EXP)
progesterone  (EXP)
quercetin  (EXP)
resveratrol  (EXP)
rotenone  (ISO)
sirolimus  (EXP)
sunitinib  (EXP)
temozolomide  (EXP)
testosterone  (EXP)
tetrachloromethane  (ISO)
thioacetamide  (ISO)
titanium dioxide  (ISO)
trichloroethene  (ISO)
tris(2-butoxyethyl) phosphate  (EXP)
troglitazone  (EXP,ISO)
valproic acid  (EXP)
vincristine  (EXP)
zoledronic acid  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Rhinovirus-induced IL-25 in asthma exacerbation drives type 2 immunity and allergic pulmonary inflammation. Beale J, etal., Sci Transl Med. 2014 Oct 1;6(256):256ra134. doi: 10.1126/scitranslmed.3009124.
2. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10748240   PMID:10749887   PMID:10815801   PMID:11058597   PMID:12477932   PMID:12975309   PMID:14759258   PMID:15340161   PMID:15489334   PMID:16344560   PMID:16609001   PMID:16609019  
PMID:17008703   PMID:17453342   PMID:17975144   PMID:18794098   PMID:19118269   PMID:19913121   PMID:20237496   PMID:20453000   PMID:20545698   PMID:20628086   PMID:20800603   PMID:21252617  
PMID:21473777   PMID:21570719   PMID:21873635   PMID:21988832   PMID:22070932   PMID:23497539   PMID:23851503   PMID:24120361   PMID:24144296   PMID:24247484   PMID:25732306   PMID:26285835  
PMID:26728744   PMID:26990986   PMID:27000993   PMID:27113764   PMID:27146881   PMID:27906959   PMID:27979026   PMID:28132739   PMID:28160754   PMID:28421819   PMID:28514442   PMID:28715683  
PMID:29496538   PMID:29729704   PMID:30649446   PMID:30945288   PMID:31182574   PMID:31585811   PMID:32948804   PMID:33455090   PMID:33649532   PMID:33658352   PMID:33961781   PMID:34065512  
PMID:34251884   PMID:34264790   PMID:35271311   PMID:35487060   PMID:37448179   PMID:38600236   PMID:39010112  


Genomics

Comparative Map Data
IL17RB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38353,846,568 - 53,865,794 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl353,846,568 - 53,865,794 (+)EnsemblGRCh38hg38GRCh38
GRCh37353,880,595 - 53,899,821 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36353,855,617 - 53,874,867 (+)NCBINCBI36Build 36hg18NCBI36
Build 34353,855,611 - 53,874,866NCBI
Celera353,847,857 - 53,867,109 (+)NCBICelera
Cytogenetic Map3p21.1NCBI
HuRef353,929,093 - 53,948,345 (+)NCBIHuRef
CHM1_1353,832,215 - 53,851,465 (+)NCBICHM1_1
T2T-CHM13v2.0353,879,806 - 53,899,034 (+)NCBIT2T-CHM13v2.0
Il17rb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391429,718,125 - 29,730,853 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1429,718,092 - 29,730,853 (-)EnsemblGRCm39 Ensembl
GRCm381429,996,168 - 30,008,896 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1429,996,135 - 30,008,896 (-)EnsemblGRCm38mm10GRCm38
MGSCv371430,809,354 - 30,822,082 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361428,825,177 - 28,837,905 (-)NCBIMGSCv36mm8
Celera1426,252,000 - 26,264,728 (-)NCBICelera
Cytogenetic Map14A3NCBI
cM Map1418.39NCBI
Il17rb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8165,186,961 - 5,200,657 (-)NCBIGRCr8
mRatBN7.2165,180,431 - 5,194,125 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl165,180,432 - 5,194,125 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx165,193,466 - 5,206,194 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0166,338,893 - 6,351,621 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0165,190,924 - 5,203,601 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0166,064,287 - 6,077,978 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl166,064,288 - 6,077,978 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0165,995,417 - 6,009,258 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4165,335,806 - 5,349,160 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1165,336,257 - 5,349,060 (-)NCBI
Celera169,990,138 - 10,002,819 (+)NCBICelera
Cytogenetic Map16p16NCBI
Il17rb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554303,831,667 - 3,846,788 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554303,831,665 - 3,847,366 (+)NCBIChiLan1.0ChiLan1.0
IL17RB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2253,838,419 - 53,857,342 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1353,843,189 - 53,862,452 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0353,784,489 - 53,803,834 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1355,005,499 - 55,024,763 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl355,005,499 - 55,024,763 (+)Ensemblpanpan1.1panPan2
IL17RB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12036,135,620 - 36,148,923 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2036,135,619 - 36,148,490 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2036,072,450 - 36,088,222 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02036,409,271 - 36,425,054 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2036,409,273 - 36,422,761 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12035,850,966 - 35,866,696 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02036,209,575 - 36,225,340 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02036,427,027 - 36,442,862 (-)NCBIUU_Cfam_GSD_1.0
Il17rb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118171,373,656 - 171,387,513 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364734,512,510 - 4,524,236 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364734,512,461 - 4,524,452 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IL17RB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1335,948,340 - 35,963,944 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11335,948,248 - 35,963,191 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21339,018,874 - 39,033,934 (+)NCBISscrofa10.2Sscrofa10.2susScr3
IL17RB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12215,229,020 - 15,249,145 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2215,229,053 - 15,248,437 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041151,642,007 - 151,662,350 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Il17rb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248223,337,940 - 3,355,199 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248223,339,236 - 3,355,278 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in IL17RB
29 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 3p21.31-14.3(chr3:49461000-55314500)x1 copy number loss See cases [RCV000051511] Chr3:49461000..55314500 [GRCh38]
Chr3:49498433..55348528 [GRCh37]
Chr3:49473437..55323568 [NCBI36]
Chr3:3p21.31-14.3
pathogenic
GRCh38/hg38 3p21.1-14.3(chr3:53287477-57025368)x1 copy number loss See cases [RCV000053929] Chr3:53287477..57025368 [GRCh38]
Chr3:53321495..57059396 [GRCh37]
Chr3:53296535..57034436 [NCBI36]
Chr3:3p21.1-14.3
uncertain significance
GRCh38/hg38 3p21.2-14.3(chr3:51394434-55064449)x1 copy number loss See cases [RCV000143631] Chr3:51394434..55064449 [GRCh38]
Chr3:51431865..55098476 [GRCh37]
Chr3:51406905..55073516 [NCBI36]
Chr3:3p21.2-14.3
likely pathogenic
GRCh37/hg19 3p21.2-14.2(chr3:52086599-59689209)x1 copy number loss See cases [RCV000239886] Chr3:52086599..59689209 [GRCh37]
Chr3:3p21.2-14.2
pathogenic
NM_018725.4(IL17RB):c.173C>G (p.Ala58Gly) single nucleotide variant not specified [RCV004313582] Chr3:53849742 [GRCh38]
Chr3:53883769 [GRCh37]
Chr3:3p21.1
uncertain significance
NM_018725.4(IL17RB):c.649A>G (p.Ile217Val) single nucleotide variant not specified [RCV004297240] Chr3:53856963 [GRCh38]
Chr3:53890990 [GRCh37]
Chr3:3p21.1
uncertain significance
GRCh37/hg19 3p26.3-q29(chr3:61892-197851986) copy number gain See cases [RCV000512358] Chr3:61892..197851986 [GRCh37]
Chr3:3p26.3-q29
pathogenic
GRCh37/hg19 3p21.1(chr3:53892719-54182466)x3 copy number gain not provided [RCV000682258] Chr3:53892719..54182466 [GRCh37]
Chr3:3p21.1
likely benign
GRCh37/hg19 3p26.3-q29(chr3:61495-197838262)x3 copy number gain not provided [RCV000742138] Chr3:61495..197838262 [GRCh37]
Chr3:3p26.3-q29
pathogenic
GRCh37/hg19 3p26.3-q29(chr3:61892-197851986)x3 copy number gain See cases [RCV000511055] Chr3:61892..197851986 [GRCh37]
Chr3:3p26.3-q29
pathogenic
GRCh37/hg19 3p26.3-q29(chr3:60174-197948027)x3 copy number gain not provided [RCV000742133] Chr3:60174..197948027 [GRCh37]
Chr3:3p26.3-q29
pathogenic
GRCh37/hg19 3p21.1(chr3:53413246-53955646)x3 copy number gain not provided [RCV000847484] Chr3:53413246..53955646 [GRCh37]
Chr3:3p21.1
uncertain significance
NM_018725.4(IL17RB):c.146G>A (p.Arg49Gln) single nucleotide variant not provided [RCV004692718]|not specified [RCV001733700] Chr3:53849715 [GRCh38]
Chr3:53883742 [GRCh37]
Chr3:3p21.1
uncertain significance
NM_018725.4(IL17RB):c.1414G>A (p.Ala472Thr) single nucleotide variant not specified [RCV004148080] Chr3:53865213 [GRCh38]
Chr3:53899240 [GRCh37]
Chr3:3p21.1
uncertain significance
NM_018725.4(IL17RB):c.826G>A (p.Val276Ile) single nucleotide variant not specified [RCV004182324] Chr3:53858797 [GRCh38]
Chr3:53892824 [GRCh37]
Chr3:3p21.1
uncertain significance
NM_018725.4(IL17RB):c.1226G>A (p.Gly409Asp) single nucleotide variant not specified [RCV004206710] Chr3:53865025 [GRCh38]
Chr3:53899052 [GRCh37]
Chr3:3p21.1
uncertain significance
NM_018725.4(IL17RB):c.1127T>C (p.Met376Thr) single nucleotide variant not specified [RCV004246560] Chr3:53864926 [GRCh38]
Chr3:53898953 [GRCh37]
Chr3:3p21.1
uncertain significance
NM_018725.4(IL17RB):c.394A>G (p.Thr132Ala) single nucleotide variant not specified [RCV004205831] Chr3:53852910 [GRCh38]
Chr3:53886937 [GRCh37]
Chr3:3p21.1
uncertain significance
NM_018725.4(IL17RB):c.1213G>A (p.Asp405Asn) single nucleotide variant not specified [RCV004075708] Chr3:53865012 [GRCh38]
Chr3:53899039 [GRCh37]
Chr3:3p21.1
uncertain significance
NM_018725.4(IL17RB):c.194T>C (p.Leu65Ser) single nucleotide variant not specified [RCV004096744] Chr3:53849763 [GRCh38]
Chr3:53883790 [GRCh37]
Chr3:3p21.1
uncertain significance
NM_018725.4(IL17RB):c.860C>T (p.Pro287Leu) single nucleotide variant not specified [RCV004267862] Chr3:53860142 [GRCh38]
Chr3:53894169 [GRCh37]
Chr3:3p21.1
likely benign
NM_018725.4(IL17RB):c.64G>A (p.Val22Ile) single nucleotide variant not specified [RCV004251375] Chr3:53848667 [GRCh38]
Chr3:53882694 [GRCh37]
Chr3:3p21.1
likely benign
NM_018725.4(IL17RB):c.1366G>A (p.Asp456Asn) single nucleotide variant not specified [RCV004248829] Chr3:53865165 [GRCh38]
Chr3:53899192 [GRCh37]
Chr3:3p21.1
likely benign
NM_018725.4(IL17RB):c.1198G>A (p.Val400Ile) single nucleotide variant not specified [RCV004263570] Chr3:53864997 [GRCh38]
Chr3:53899024 [GRCh37]
Chr3:3p21.1
uncertain significance
NM_018725.4(IL17RB):c.1159A>G (p.Lys387Glu) single nucleotide variant not specified [RCV004351425] Chr3:53864958 [GRCh38]
Chr3:53898985 [GRCh37]
Chr3:3p21.1
uncertain significance
NM_018725.4(IL17RB):c.1160A>C (p.Lys387Thr) single nucleotide variant not specified [RCV004351426] Chr3:53864959 [GRCh38]
Chr3:53898986 [GRCh37]
Chr3:3p21.1
uncertain significance
NM_018725.4(IL17RB):c.235C>T (p.Arg79Cys) single nucleotide variant not specified [RCV004350277] Chr3:53852007 [GRCh38]
Chr3:53886034 [GRCh37]
Chr3:3p21.1
uncertain significance
GRCh37/hg19 3p21.2-14.2(chr3:51149374-59265315)x1 copy number loss not specified [RCV003986409] Chr3:51149374..59265315 [GRCh37]
Chr3:3p21.2-14.2
pathogenic
GRCh37/hg19 3p21.1(chr3:53532755-54395791)x3 copy number gain not specified [RCV003986463] Chr3:53532755..54395791 [GRCh37]
Chr3:3p21.1
uncertain significance
GRCh37/hg19 3p21.1-14.3(chr3:53659716-54500525)x3 copy number gain not specified [RCV003986453] Chr3:53659716..54500525 [GRCh37]
Chr3:3p21.1-14.3
uncertain significance
NM_018725.4(IL17RB):c.529G>A (p.Gly177Arg) single nucleotide variant not provided [RCV004585258] Chr3:53855341 [GRCh38]
Chr3:53889368 [GRCh37]
Chr3:3p21.1
likely benign
NM_018725.4(IL17RB):c.1344T>G (p.Phe448Leu) single nucleotide variant not specified [RCV004405022] Chr3:53865143 [GRCh38]
Chr3:53899170 [GRCh37]
Chr3:3p21.1
uncertain significance
NM_018725.4(IL17RB):c.236G>A (p.Arg79His) single nucleotide variant not specified [RCV004405023] Chr3:53852008 [GRCh38]
Chr3:53886035 [GRCh37]
Chr3:3p21.1
uncertain significance
NM_018725.4(IL17RB):c.266C>T (p.Thr89Met) single nucleotide variant not specified [RCV004405024] Chr3:53852038 [GRCh38]
Chr3:53886065 [GRCh37]
Chr3:3p21.1
uncertain significance
NM_018725.4(IL17RB):c.413C>A (p.Ala138Asp) single nucleotide variant not specified [RCV004405025] Chr3:53852929 [GRCh38]
Chr3:53886956 [GRCh37]
Chr3:3p21.1
uncertain significance
NM_018725.4(IL17RB):c.710T>C (p.Ile237Thr) single nucleotide variant not specified [RCV004405026] Chr3:53857653 [GRCh38]
Chr3:53891680 [GRCh37]
Chr3:3p21.1
uncertain significance
NM_018725.4(IL17RB):c.766A>G (p.Thr256Ala) single nucleotide variant not specified [RCV004405027] Chr3:53858737 [GRCh38]
Chr3:53892764 [GRCh37]
Chr3:3p21.1
uncertain significance
NM_018725.4(IL17RB):c.788G>A (p.Arg263Gln) single nucleotide variant not specified [RCV004405028] Chr3:53858759 [GRCh38]
Chr3:53892786 [GRCh37]
Chr3:3p21.1
uncertain significance
NM_018725.4(IL17RB):c.965C>T (p.Ser322Phe) single nucleotide variant not specified [RCV004405029] Chr3:53864764 [GRCh38]
Chr3:53898791 [GRCh37]
Chr3:3p21.1
uncertain significance
NM_018725.4(IL17RB):c.795A>T (p.Lys265Asn) single nucleotide variant not specified [RCV004627964] Chr3:53858766 [GRCh38]
Chr3:53892793 [GRCh37]
Chr3:3p21.1
uncertain significance
NM_018725.4(IL17RB):c.239T>C (p.Leu80Ser) single nucleotide variant not specified [RCV004627965] Chr3:53852011 [GRCh38]
Chr3:53886038 [GRCh37]
Chr3:3p21.1
uncertain significance
NM_018725.4(IL17RB):c.1126A>G (p.Met376Val) single nucleotide variant not specified [RCV004213926] Chr3:53864925 [GRCh38]
Chr3:53898952 [GRCh37]
Chr3:3p21.1
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:388
Count of miRNA genes:266
Interacting mature miRNAs:280
Transcripts:ENST00000288167, ENST00000475124, ENST00000494338
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407249703GWAS898679_Hvesicoureteral reflux QTL GWAS898679 (human)0.0000002vesicoureteral reflux35385088753850888Human
406892673GWAS541649_Hinterleukin-17 receptor B measurement QTL GWAS541649 (human)4e-77interleukin-17 receptor B measurement35385880353858804Human
407241029GWAS890005_Hserum metabolite measurement QTL GWAS890005 (human)0.000002serum metabolite measurement35386524953865250Human
1298487BFD1_HBody fluid distribution QTL 1 (human)3.94Body fluid distributionimpedance ratio33638071262380712Human
407281281GWAS930257_Hbody height QTL GWAS930257 (human)8e-10body height (VT:0001253)body height (CMO:0000106)35386282353862824Human
1298489RA4_HRheumatoid arthritis QTL 4 (human)0.0283Joint/bone inflammationrheumatoid arthritis33638071262380712Human
1643509BW293_HBody Weight QTL 293 (human)1.42Body weightBMI33638071262380712Human
2289308BW392_HBody weight QTL 392 (human)1.42Body weightBMI33638071262380712Human
1331643COPD16_HChronic obstructive pulmonary disease QTL 16 (human)1.07Chronic airflow obstructionpost-BD FEV1 minus pre-BD FEV1/pre-BD FEV1 x 10034938065175380651Human

Markers in Region
RH102982  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37353,893,126 - 53,893,253UniSTSGRCh37
Build 36353,868,166 - 53,868,293RGDNCBI36
Celera353,860,408 - 53,860,535RGD
Cytogenetic Map3p21.1UniSTS
HuRef353,941,645 - 53,941,772UniSTS
GeneMap99-GB4 RH Map3173.07UniSTS
RH44991  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37353,899,800 - 53,899,899UniSTSGRCh37
Build 36353,874,840 - 53,874,939RGDNCBI36
Celera353,867,082 - 53,867,181RGD
Cytogenetic Map3p21.1UniSTS
HuRef353,948,318 - 53,948,417UniSTS
GeneMap99-GB4 RH Map3159.69UniSTS
SHGC-35928  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37353,899,490 - 53,899,605UniSTSGRCh37
Build 36353,874,530 - 53,874,645RGDNCBI36
Celera353,866,772 - 53,866,887RGD
Cytogenetic Map3p21.1UniSTS
HuRef353,948,008 - 53,948,123UniSTS
Stanford-G3 RH Map32438.0UniSTS
GeneMap99-G3 RH Map32336.0UniSTS
RH16665  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37353,899,426 - 53,899,533UniSTSGRCh37
Build 36353,874,466 - 53,874,573RGDNCBI36
Celera353,866,708 - 53,866,815RGD
Cytogenetic Map3p21.1UniSTS
HuRef353,947,944 - 53,948,051UniSTS
GeneMap99-GB4 RH Map3173.17UniSTS
NCBI RH Map3503.3UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2437 2788 2252 4960 1720 2342 6 624 1928 465 2262 7274 6446 46 3727 1 846 1740 1607 173 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_018725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005265310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005265311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005265312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011533941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017006804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017006805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017006806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017006807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024453634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024453635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024453636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC012467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF208110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF208111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF212365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF250309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK307749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AX253209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY359122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY518533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC000980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI458542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CS135264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA093617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000288167   ⟹   ENSP00000288167
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl353,846,568 - 53,865,794 (+)Ensembl
Ensembl Acc Id: ENST00000475124
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl353,846,584 - 53,865,588 (+)Ensembl
Ensembl Acc Id: ENST00000494338   ⟹   ENSP00000418638
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl353,846,585 - 53,864,891 (+)Ensembl
RefSeq Acc Id: NM_018725   ⟹   NP_061195
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38353,846,568 - 53,865,794 (+)NCBI
GRCh37353,880,577 - 53,899,827 (+)ENTREZGENE
Build 36353,855,617 - 53,874,867 (+)NCBI Archive
HuRef353,929,093 - 53,948,345 (+)ENTREZGENE
CHM1_1353,832,215 - 53,851,465 (+)NCBI
T2T-CHM13v2.0353,879,806 - 53,899,034 (+)NCBI
Sequence:
RefSeq Acc Id: NP_061195   ⟸   NM_018725
- Peptide Label: precursor
- UniProtKB: Q9NRL4 (UniProtKB/Swiss-Prot),   Q9BPZ0 (UniProtKB/Swiss-Prot),   Q9NRM5 (UniProtKB/Swiss-Prot),   Q9NRM6 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSP00000418638   ⟸   ENST00000494338
Ensembl Acc Id: ENSP00000288167   ⟸   ENST00000288167
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9NRM6-F1-model_v2 AlphaFold Q9NRM6 1-502 view protein structure

Promoters
RGD ID:6864746
Promoter ID:EPDNEW_H5538
Type:initiation region
Name:IL17RB_1
Description:interleukin 17 receptor B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38353,846,568 - 53,846,628EPDNEW
RGD ID:6801152
Promoter ID:HG_KWN:45297
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   HeLa_S3,   K562,   Lymphoblastoid
Transcripts:NM_018397,   NM_018725
Position:
Human AssemblyChrPosition (strand)Source
Build 36353,854,226 - 53,855,692 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:18015 AgrOrtholog
COSMIC IL17RB COSMIC
Ensembl Genes ENSG00000056736 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000288167 ENTREZGENE
  ENST00000288167.8 UniProtKB/Swiss-Prot
  ENST00000494338.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.2150 UniProtKB/Swiss-Prot
  2.60.40.2160 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.11530 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000056736 GTEx
HGNC ID HGNC:18015 ENTREZGENE
Human Proteome Map IL17RB Human Proteome Map
InterPro IL-17_rcpt-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IL17R_fnIII_D1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IL17RA/B_FnIII-like_1_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IL17RA/B_FnIII-like_2_sf UniProtKB/Swiss-Prot
  SEFIR_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:55540 UniProtKB/Swiss-Prot
NCBI Gene 55540 ENTREZGENE
OMIM 605458 OMIM
PANTHER INTERLEUKIN-17 RECEPTOR B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR15583 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam IL17R_fnIII_D1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IL17R_fnIII_D2 UniProtKB/Swiss-Prot
  SEFIR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA29796 PharmGKB
PROSITE SEFIR UniProtKB/Swiss-Prot
UniProt C9IZN0_HUMAN UniProtKB/TrEMBL
  I17RB_HUMAN UniProtKB/Swiss-Prot
  Q9BPZ0 ENTREZGENE
  Q9NRL4 ENTREZGENE
  Q9NRM5 ENTREZGENE
  Q9NRM6 ENTREZGENE
UniProt Secondary Q9BPZ0 UniProtKB/Swiss-Prot
  Q9NRL4 UniProtKB/Swiss-Prot
  Q9NRM5 UniProtKB/Swiss-Prot