GWAS890005_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS890005_H (serum metabolite measurement QTL GWAS890005 (human)) Homo sapiens

Symbol: GWAS890005_H
Name: serum metabolite measurement QTL GWAS890005 (human)
RGD ID: 407241029
Trait: serum metabolite measurement
LOD Score: Not Available
P Value: 2.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38353,865,249 - 53,865,250RGD_MAPPER_PIPELINEGRCh38
GRCh37353,899,276 - 53,899,277RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS890005_HHumanserum metabolite measurement  IAGPrs1043261405850206 GWAS_CATALOGPMID:31882771
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1322830IL17RBinterleukin 17 receptor B35384656853865794Human
1323563ACTR8actin related protein 835385899253882152Human

Position Markers

Peak: (rs1043261)
Human AssemblyChrPosition (strand)Source
GRCh38353,865,249 - 53,865,250RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407241029GWAS890005_Hserum metabolite measurement QTL GWAS890005 (human)0.000002serum metabolite measurement35386524953865250Human
1298487BFD1_HBody fluid distribution QTL 1 (human)3.94Body fluid distributionimpedance ratio33638071262380712Human
1298489RA4_HRheumatoid arthritis QTL 4 (human)0.0283Joint/bone inflammationrheumatoid arthritis33638071262380712Human
1643509BW293_HBody Weight QTL 293 (human)1.42Body weightBMI33638071262380712Human
2289308BW392_HBody weight QTL 392 (human)1.42Body weightBMI33638071262380712Human
1331643COPD16_HChronic obstructive pulmonary disease QTL 16 (human)1.07Chronic airflow obstructionpost-BD FEV1 minus pre-BD FEV1/pre-BD FEV1 x 10034938065175380651Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS890005_H GCST90134229 N-methylpipecolate levels in elite athletes 490 individuals ? NR 0.000002 5.699 rs1043261 0.54178435 serum metabolite measurement (EFO:0005653)
 PMID:31882771
Database Acc Id Source(s)
GWAS Catalog GCST90134229 GWAS Catalog

RGD Curation Notes
Note Type Note Reference