IL17RB (interleukin 17 receptor B) - Rat Genome Database

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Gene: IL17RB (interleukin 17 receptor B) Sus scrofa
Analyze
Symbol: IL17RB
Name: interleukin 17 receptor B
RGD ID: 13947866
Description: ENCODES a protein that exhibits interleukin-17 receptor activity (inferred); INVOLVED IN positive regulation of inflammatory response (ortholog); positive regulation of interleukin-13 production (ortholog); positive regulation of interleukin-5 production (ortholog); ASSOCIATED WITH asthma (ortholog); genetic disease (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: interleukin-17 receptor B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1335,948,340 - 35,963,944 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11335,948,248 - 35,963,191 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21339,018,874 - 39,033,934 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
asthma  (ISO)
genetic disease  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
IL17RB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1335,948,340 - 35,963,944 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11335,948,248 - 35,963,191 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21339,018,874 - 39,033,934 (+)NCBISscrofa10.2Sscrofa10.2susScr3
IL17RB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38353,846,568 - 53,865,794 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl353,846,568 - 53,865,794 (+)EnsemblGRCh38hg38GRCh38
GRCh37353,880,595 - 53,899,821 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36353,855,617 - 53,874,867 (+)NCBINCBI36Build 36hg18NCBI36
Build 34353,855,611 - 53,874,866NCBI
Celera353,847,857 - 53,867,109 (+)NCBICelera
Cytogenetic Map3p21.1NCBI
HuRef353,929,093 - 53,948,345 (+)NCBIHuRef
CHM1_1353,832,215 - 53,851,465 (+)NCBICHM1_1
T2T-CHM13v2.0353,879,806 - 53,899,034 (+)NCBIT2T-CHM13v2.0
Il17rb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391429,718,125 - 29,730,853 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1429,718,092 - 29,730,853 (-)EnsemblGRCm39 Ensembl
GRCm381429,996,168 - 30,008,896 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1429,996,135 - 30,008,896 (-)EnsemblGRCm38mm10GRCm38
MGSCv371430,809,354 - 30,822,082 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361428,825,177 - 28,837,905 (-)NCBIMGSCv36mm8
Celera1426,252,000 - 26,264,728 (-)NCBICelera
Cytogenetic Map14A3NCBI
cM Map1418.39NCBI
Il17rb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8165,186,961 - 5,200,657 (-)NCBIGRCr8
mRatBN7.2165,180,431 - 5,194,125 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl165,180,432 - 5,194,125 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx165,193,466 - 5,206,194 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0166,338,893 - 6,351,621 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0165,190,924 - 5,203,601 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0166,064,287 - 6,077,978 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl166,064,288 - 6,077,978 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0165,995,417 - 6,009,258 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4165,335,806 - 5,349,160 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1165,336,257 - 5,349,060 (-)NCBI
Celera169,990,138 - 10,002,819 (+)NCBICelera
Cytogenetic Map16p16NCBI
Il17rb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554303,831,667 - 3,846,788 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554303,831,665 - 3,847,366 (+)NCBIChiLan1.0ChiLan1.0
IL17RB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2253,838,419 - 53,857,342 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1353,843,189 - 53,862,452 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0353,784,489 - 53,803,834 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1355,005,499 - 55,024,763 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl355,005,499 - 55,024,763 (+)Ensemblpanpan1.1panPan2
IL17RB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12036,135,620 - 36,148,923 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2036,135,619 - 36,148,490 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2036,072,450 - 36,088,222 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02036,409,271 - 36,425,054 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2036,409,273 - 36,422,761 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12035,850,966 - 35,866,696 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02036,209,575 - 36,225,340 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02036,427,027 - 36,442,862 (-)NCBIUU_Cfam_GSD_1.0
Il17rb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118171,373,656 - 171,387,513 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364734,512,510 - 4,524,236 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364734,512,461 - 4,524,452 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IL17RB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12215,229,020 - 15,249,145 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2215,229,053 - 15,248,437 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041151,642,007 - 151,662,350 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Il17rb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248223,337,940 - 3,355,199 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248223,339,236 - 3,355,278 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in IL17RB
240 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 9 4 3 5 2 23 2 3 2
Below cutoff 1 1

Sequence


RefSeq Acc Id: ENSSSCT00000049312   ⟹   ENSSSCP00000041531
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1335,948,340 - 35,963,944 (+)Ensembl
RefSeq Acc Id: XM_005669645   ⟹   XP_005669702
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11335,948,248 - 35,963,191 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021068972   ⟹   XP_020924631
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11335,948,248 - 35,963,168 (+)NCBI
Sequence:
RefSeq Acc Id: XP_005669702   ⟸   XM_005669645
- Peptide Label: isoform X1
- UniProtKB: A0A287AD03 (UniProtKB/TrEMBL),   A0A4X1VKS3 (UniProtKB/TrEMBL),   A0A287ACJ1 (UniProtKB/TrEMBL),   A0A4X1VGR4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020924631   ⟸   XM_021068972
- Peptide Label: isoform X2
- UniProtKB: A0A4X1VGR4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000041531   ⟸   ENSSSCT00000049312
Protein Domains
SEFIR


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000037914 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025028330 UniProtKB/TrEMBL
  ENSSSCG00030031622 UniProtKB/TrEMBL
  ENSSSCG00035016651 UniProtKB/TrEMBL
  ENSSSCG00040048957 UniProtKB/TrEMBL
  ENSSSCG00045037162 UniProtKB/TrEMBL
  ENSSSCG00050037475 UniProtKB/TrEMBL
  ENSSSCG00055013678 UniProtKB/TrEMBL
  ENSSSCG00060014293 UniProtKB/TrEMBL
  ENSSSCG00065027432 UniProtKB/TrEMBL
  ENSSSCG00070025194 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000049312 ENTREZGENE
  ENSSSCT00000049312.3 UniProtKB/TrEMBL
  ENSSSCT00025038457.1 UniProtKB/TrEMBL
  ENSSSCT00025038568.1 UniProtKB/TrEMBL
  ENSSSCT00030043806.1 UniProtKB/TrEMBL
  ENSSSCT00030043842.1 UniProtKB/TrEMBL
  ENSSSCT00035021302.1 UniProtKB/TrEMBL
  ENSSSCT00035021310.1 UniProtKB/TrEMBL
  ENSSSCT00040065987.1 UniProtKB/TrEMBL
  ENSSSCT00045064080.1 UniProtKB/TrEMBL
  ENSSSCT00045064126.1 UniProtKB/TrEMBL
  ENSSSCT00050050443.1 UniProtKB/TrEMBL
  ENSSSCT00050050445.1 UniProtKB/TrEMBL
  ENSSSCT00055026922.1 UniProtKB/TrEMBL
  ENSSSCT00060018889.1 UniProtKB/TrEMBL
  ENSSSCT00065036969.1 UniProtKB/TrEMBL
  ENSSSCT00065036976.1 UniProtKB/TrEMBL
  ENSSSCT00065036982.1 UniProtKB/TrEMBL
  ENSSSCT00070050368.1 UniProtKB/TrEMBL
  ENSSSCT00070050370.1 UniProtKB/TrEMBL
  ENSSSCT00070050372.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.2150 UniProtKB/TrEMBL
  2.60.40.2160 UniProtKB/TrEMBL
  3.40.50.11530 UniProtKB/TrEMBL
InterPro IL-17_rcpt-like UniProtKB/TrEMBL
  IL17R_fnIII_D1 UniProtKB/TrEMBL
  IL17RA/B_FnIII-like_1_sf UniProtKB/TrEMBL
  IL17RA/B_FnIII-like_2_sf UniProtKB/TrEMBL
  SEFIR_dom UniProtKB/TrEMBL
KEGG Report ssc:100156014 UniProtKB/TrEMBL
NCBI Gene IL17RB ENTREZGENE
PANTHER INTERLEUKIN-17 RECEPTOR B UniProtKB/TrEMBL
  PTHR15583 UniProtKB/TrEMBL
Pfam IL17R_fnIII_D1 UniProtKB/TrEMBL
  IL17R_fnIII_D2 UniProtKB/TrEMBL
  SEFIR UniProtKB/TrEMBL
PROSITE SEFIR UniProtKB/TrEMBL
UniProt A0A287ACJ1 ENTREZGENE, UniProtKB/TrEMBL
  A0A287AD03 ENTREZGENE
  A0A4X1VGR4 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VKS3 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VL80_PIG UniProtKB/TrEMBL
UniProt Secondary A0A287AD03 UniProtKB/TrEMBL
VGNC ID VGNC:89086 ENTREZGENE