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Gene: Grsf1 (G-rich RNA sequence binding factor 1) Mus musculus

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Symbol:

Grsf1

Name:

G-rich RNA sequence binding factor 1

RGD ID:

1322003

MGI Page

MGI

Description:

Predicted to enable RNA binding activity. Acts upstream of or within anterior/posterior pattern specification and morphogenesis of embryonic epithelium. Located in mitochondrion. Is expressed in several structures, including central nervous system; genitourinary system; gut; liver; and sensory organ. Orthologous to human GRSF1 (G-rich RNA sequence binding factor 1).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

B130010H02; BB232551; C80280; D5Wsu31; D5Wsu31e; DNA segment, Chr 5, Wayne State University 31, expressed; G-rich sequence factor 1; GRSF-1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	GRSF1 (G-rich RNA sequence binding factor 1)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Grsf1 (G-rich RNA sequence binding factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Grsf1 (G-rich RNA sequence binding factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	GRSF1 (G-rich RNA sequence binding factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	GRSF1 (G-rich RNA sequence binding factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Grsf1 (G-rich RNA sequence binding factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	GRSF1 (G-rich RNA sequence binding factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	GRSF1 (G-rich RNA sequence binding factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Grsf1 (G-rich RNA sequence binding factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Grsf1 (G-rich RNA sequence binding factor 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	GRSF1 (G-rich RNA sequence binding factor 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	grsf1 (G-rich RNA sequence binding factor 1)	Alliance	DIOPT (OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	glo	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	hrpf-2	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	grsf1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	88,807,092 - 88,824,030 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	88,807,307 - 88,824,030 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	88,659,233 - 88,676,171 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	88,659,448 - 88,676,171 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	89,088,262 - 89,105,196 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	89,734,019 - 89,750,732 (-)	NCBI		MGSCv36	mm8
Celera	5	86,808,436 - 86,825,419 (-)	NCBI		Celera
Cytogenetic Map	5	E1	NCBI
cM Map	5	43.85	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Grsf1	Mouse	1,2-dimethylhydrazine	decreases expression	EXP		6480464	1 and 2-Dimethylhydrazine results in decreased expression of GRSF1 mRNA	CTD	PMID:22206623
Grsf1	Mouse	1,2-dimethylhydrazine	multiple interactions	EXP		6480464	[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of GRSF1 mRNA	CTD	PMID:22206623
Grsf1	Mouse	1-chloro-2,4-dinitrobenzene	affects binding	ISO	GRSF1 (Homo sapiens)	6480464	Dinitrochlorobenzene binds to GRSF1 protein	CTD	PMID:32991956
Grsf1	Mouse	2,3,7,8-tetrachlorodibenzodioxine	affects expression	EXP		6480464	Tetrachlorodibenzodioxin affects the expression of GRSF1 mRNA	CTD	PMID:21570461
Grsf1	Mouse	4,4'-sulfonyldiphenol	increases expression	EXP		6480464	bisphenol S results in increased expression of GRSF1 mRNA	CTD	PMID:39298647
Grsf1	Mouse	4,4'-sulfonyldiphenol	increases expression	ISO	GRSF1 (Homo sapiens)	6480464	bisphenol S results in increased expression of GRSF1 protein	CTD	PMID:34186270
Grsf1	Mouse	aconitine	increases expression	ISO	Grsf1 (Rattus norvegicus)	6480464	Aconitine results in increased expression of GRSF1 protein	CTD	PMID:33236894
Grsf1	Mouse	aflatoxin B1	increases methylation	ISO	GRSF1 (Homo sapiens)	6480464	Aflatoxin B1 results in increased methylation of GRSF1 intron	CTD	PMID:30157460
Grsf1	Mouse	Aflatoxin B2 alpha	decreases methylation	ISO	GRSF1 (Homo sapiens)	6480464	aflatoxin B2 results in decreased methylation of GRSF1 intron	CTD	PMID:30157460
Grsf1	Mouse	all-trans-retinoic acid	increases expression	ISO	Grsf1 (Rattus norvegicus)	6480464	Tretinoin results in increased expression of GRSF1 mRNA	CTD	PMID:20488242
Grsf1	Mouse	all-trans-retinoic acid	decreases expression	ISO	GRSF1 (Homo sapiens)	6480464	Tretinoin results in decreased expression of GRSF1 mRNA	CTD	PMID:33167477
Grsf1	Mouse	antirheumatic drug	increases expression	ISO	GRSF1 (Homo sapiens)	6480464	Antirheumatic Agents results in increased expression of GRSF1 mRNA	CTD	PMID:24449571
Grsf1	Mouse	aristolochic acid A	decreases expression	ISO	GRSF1 (Homo sapiens)	6480464	aristolochic acid I results in decreased expression of GRSF1 mRNA	CTD	PMID:33212167
Grsf1	Mouse	atrazine	decreases expression	ISO	GRSF1 (Homo sapiens)	6480464	Atrazine results in decreased expression of GRSF1 mRNA	CTD	PMID:22378314
Grsf1	Mouse	benzo[a]pyrene	affects methylation	ISO	GRSF1 (Homo sapiens)	6480464	Benzo(a)pyrene affects the methylation of GRSF1 intron	CTD	PMID:30157460
Grsf1	Mouse	benzo[a]pyrene diol epoxide I	decreases expression	ISO	GRSF1 (Homo sapiens)	6480464	7 more ...	CTD	PMID:19150397
Grsf1	Mouse	bisphenol A	increases expression	ISO	Grsf1 (Rattus norvegicus)	6480464	bisphenol A results in increased expression of GRSF1 mRNA	CTD	PMID:25181051 and PMID:30816183
Grsf1	Mouse	bisphenol A	decreases expression	ISO	GRSF1 (Homo sapiens)	6480464	bisphenol A results in decreased expression of GRSF1 protein	CTD	PMID:34186270 and PMID:37567409
Grsf1	Mouse	cadmium dichloride	decreases expression	ISO	GRSF1 (Homo sapiens)	6480464	Cadmium Chloride results in decreased expression of GRSF1 mRNA	CTD	PMID:38568856
Grsf1	Mouse	chlorpyrifos	decreases expression	EXP		6480464	Chlorpyrifos results in decreased expression of GRSF1 mRNA	CTD	PMID:32715474
Grsf1	Mouse	cobalt dichloride	increases expression	ISO	GRSF1 (Homo sapiens)	6480464	cobaltous chloride results in increased expression of GRSF1 mRNA	CTD	PMID:19376846
Grsf1	Mouse	copper atom	multiple interactions	ISO	GRSF1 (Homo sapiens)	6480464	[NSC 689534 binds to Copper] which results in decreased expression of GRSF1 mRNA	CTD	PMID:20971185
Grsf1	Mouse	copper(0)	multiple interactions	ISO	GRSF1 (Homo sapiens)	6480464	[NSC 689534 binds to Copper] which results in decreased expression of GRSF1 mRNA	CTD	PMID:20971185
Grsf1	Mouse	copper(II) sulfate	decreases expression	ISO	GRSF1 (Homo sapiens)	6480464	Copper Sulfate results in decreased expression of GRSF1 mRNA	CTD	PMID:19549813
Grsf1	Mouse	cyclosporin A	decreases expression	ISO	GRSF1 (Homo sapiens)	6480464	Cyclosporine results in decreased expression of GRSF1 mRNA	CTD	PMID:25562108
Grsf1	Mouse	dexamethasone	multiple interactions	EXP		6480464	[Dexamethasone co-treated with INS protein] results in increased expression of GRSF1 mRNA	CTD	PMID:11916924
Grsf1	Mouse	Dibutyl phosphate	affects expression	ISO	GRSF1 (Homo sapiens)	6480464	di-n-butylphosphoric acid affects the expression of GRSF1 mRNA	CTD	PMID:37042841
Grsf1	Mouse	dibutyl phthalate	decreases expression	EXP		6480464	Dibutyl Phthalate results in decreased expression of GRSF1 mRNA	CTD	PMID:21266533
Grsf1	Mouse	dorsomorphin	multiple interactions	ISO	GRSF1 (Homo sapiens)	6480464	[NOG protein co-treated with Phenylmercuric Acetate co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression of GRSF1 mRNA	CTD	PMID:27188386
Grsf1	Mouse	doxorubicin	decreases expression	ISO	GRSF1 (Homo sapiens)	6480464	Doxorubicin results in decreased expression of GRSF1 mRNA	CTD	PMID:29803840
Grsf1	Mouse	enzyme inhibitor	multiple interactions	ISO	GRSF1 (Homo sapiens)	6480464	[Enzyme Inhibitors results in decreased activity of OGA protein] which results in increased O-linked glycosylation of GRSF1 protein	CTD	PMID:23301498
Grsf1	Mouse	folic acid	multiple interactions	EXP		6480464	[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of GRSF1 mRNA	CTD	PMID:22206623
Grsf1	Mouse	formaldehyde	decreases expression	ISO	GRSF1 (Homo sapiens)	6480464	Formaldehyde results in decreased expression of GRSF1 mRNA	CTD	PMID:23649840
Grsf1	Mouse	FR900359	affects phosphorylation	ISO	GRSF1 (Homo sapiens)	6480464	FR900359 affects the phosphorylation of GRSF1 protein	CTD	PMID:37730182
Grsf1	Mouse	gentamycin	decreases expression	ISO	Grsf1 (Rattus norvegicus)	6480464	Gentamicins results in decreased expression of GRSF1 mRNA	CTD	PMID:22061828
Grsf1	Mouse	glafenine	decreases expression	ISO	Grsf1 (Rattus norvegicus)	6480464	Glafenine results in decreased expression of GRSF1 mRNA	CTD	PMID:24136188
Grsf1	Mouse	ivermectin	decreases expression	ISO	GRSF1 (Homo sapiens)	6480464	Ivermectin results in decreased expression of GRSF1 protein	CTD	PMID:32959892
Grsf1	Mouse	methyl methanesulfonate	decreases expression	ISO	GRSF1 (Homo sapiens)	6480464	Methyl Methanesulfonate results in decreased expression of GRSF1 mRNA	CTD	PMID:23649840
Grsf1	Mouse	phenylmercury acetate	decreases expression	ISO	GRSF1 (Homo sapiens)	6480464	Phenylmercuric Acetate results in decreased expression of GRSF1 mRNA	CTD	PMID:26272509
Grsf1	Mouse	phenylmercury acetate	multiple interactions	ISO	GRSF1 (Homo sapiens)	6480464	[NOG protein co-treated with Phenylmercuric Acetate co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression of GRSF1 mRNA	CTD	PMID:27188386
Grsf1	Mouse	SB 431542	multiple interactions	ISO	GRSF1 (Homo sapiens)	6480464	[LDN 193189 co-treated with 4-(5-benzo(1 more ...	CTD	PMID:27188386 and PMID:37664457
Grsf1	Mouse	sodium arsenite	increases expression	ISO	GRSF1 (Homo sapiens)	6480464	sodium arsenite results in increased expression of GRSF1 protein	CTD	PMID:21925251
Grsf1	Mouse	triphenyl phosphate	affects expression	ISO	GRSF1 (Homo sapiens)	6480464	triphenyl phosphate affects the expression of GRSF1 mRNA	CTD	PMID:37042841
Grsf1	Mouse	triptonide	decreases expression	EXP		6480464	triptonide results in decreased expression of GRSF1 mRNA	CTD	PMID:33045310

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Grsf1	Mouse	anterior/posterior pattern specification	acts_upstream_of_or_within	IMP		2290270	PMID:15857914	MGI	PMID:15857914
Grsf1	Mouse	morphogenesis of embryonic epithelium	acts_upstream_of_or_within	IMP		2290270	PMID:15857914	MGI	PMID:15857914
Grsf1	Mouse	mRNA processing	involved_in	IEA	UniProtKB-KW:KW-0507	2290270		UniProt	GO_REF:0000043
Grsf1	Mouse	positive regulation of mitochondrial RNA catabolic process	involved_in	IEA	UniProtKB:Q12849 and ensembl:ENSP00000254799	2290270		Ensembl	GO_REF:0000107
Grsf1	Mouse	positive regulation of mitochondrial RNA catabolic process	involved_in	ISO	UniProtKB:Q12849	2290270		GO_Central	GO_REF:0000119
Grsf1	Mouse	regulation of RNA splicing	involved_in	IBA	PANTHER:PTN000360053 more ...	2290270		GO_Central	GO_REF:0000033
Grsf1	Mouse	tRNA processing	involved_in	IEA	UniProtKB-KW:KW-0819	2290270		UniProt	GO_REF:0000043

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Grsf1	Mouse	cytoplasm	located_in	ISO	GRSF1 (Homo sapiens)	9068941	PMID:8036161	UniProt	PMID:8036161
Grsf1	Mouse	mitochondrial nucleoid	located_in	ISS	UniProtKB:Q12849	2290270		UniProt	GO_REF:0000024
Grsf1	Mouse	mitochondrial nucleoid	located_in	ISO	UniProtKB:Q12849	2290270		GO_Central	GO_REF:0000119
Grsf1	Mouse	mitochondrion	located_in	HDA		2290270	PMID:18614015	MGI	PMID:18614015
Grsf1	Mouse	mitochondrion	located_in	ISO	UniProtKB:Q12849	2290270		GO_Central	GO_REF:0000119
Grsf1	Mouse	nucleoplasm	is_active_in	IBA	PANTHER:PTN000360053 more ...	2290270		GO_Central	GO_REF:0000033
Grsf1	Mouse	ribonucleoprotein complex	part_of	IBA	PANTHER:PTN000359854 more ...	2290270		GO_Central	GO_REF:0000033
Grsf1	Mouse	ribonucleoprotein granule	located_in	ISO	UniProtKB:Q12849	2290270		GO_Central	GO_REF:0000119
Grsf1	Mouse	ribonucleoprotein granule	located_in	ISS	UniProtKB:Q12849	2290270		UniProt	GO_REF:0000024

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Grsf1	Mouse	mRNA binding	enables	IEA	UniProtKB:Q12849 and ensembl:ENSP00000254799	2290270		Ensembl	GO_REF:0000107
Grsf1	Mouse	protein binding	enables	ISO	UniProtKB:O75832	9068941	PMID:24338975	IntAct	PMID:24338975
Grsf1	Mouse	protein binding	enables	ISO	UniProtKB:Q8IYB8 and UniProtKB:Q8TCS8	9068941	PMID:29967381	UniProt	PMID:29967381
Grsf1	Mouse	RNA binding	enables	IBA	PANTHER:PTN000360053 more ...	2290270		GO_Central	GO_REF:0000033
Grsf1	Mouse	RNA binding	enables	ISO	UniProtKB:Q12849	2290270		GO_Central	GO_REF:0000119

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Grsf1	Mouse	decreased leukocyte cell number		IEA		5509061		MGI

#	Reference Title	Reference Citation
1.	Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development.	Ko MS, etal., Development 2000 Apr;127(8):1737-49.
2.	Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome.	Ko MS, etal., Hum Mol Genet 1998 Nov;7(12):1967-78.
3.	MGDs mouse GO annotations	MGD data from the GO Consortium
4.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:10349636	PMID:10922068	PMID:11042159	PMID:11076861	PMID:11217851	PMID:11544199	PMID:12477932	PMID:12904583	PMID:14610273	PMID:15345747	PMID:15782199	PMID:15857914
PMID:16033648	PMID:16141072	PMID:16141073	PMID:18593884	PMID:18614015	PMID:21267068	PMID:21677750	PMID:21873635	PMID:25184340	PMID:30944385	PMID:30973865	PMID:31085189
PMID:32245826	PMID:32325033	PMID:33473114	PMID:34078750	PMID:36494688	PMID:37861894	PMID:38355793

Grsf1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	88,807,092 - 88,824,030 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	88,807,307 - 88,824,030 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	88,659,233 - 88,676,171 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	88,659,448 - 88,676,171 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	89,088,262 - 89,105,196 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	89,734,019 - 89,750,732 (-)	NCBI		MGSCv36	mm8
Celera	5	86,808,436 - 86,825,419 (-)	NCBI		Celera
Cytogenetic Map	5	E1	NCBI
cM Map	5	43.85	NCBI

GRSF1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	70,815,783 - 70,843,235 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	70,815,783 - 70,839,897 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	71,681,500 - 71,705,607 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	71,900,363 - 71,924,491 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	4	72,050,127 - 72,070,632	NCBI
Celera	4	69,038,501 - 69,062,624 (-)	NCBI		Celera
Cytogenetic Map	4	q13.3	NCBI
HuRef	4	67,485,242 - 67,509,755 (-)	NCBI		HuRef
CHM1_1	4	71,717,528 - 71,741,653 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	4	74,158,253 - 74,185,655 (-)	NCBI		T2T-CHM13v2.0

Grsf1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	19,696,925 - 19,713,427 (+)	NCBI		GRCr8
mRatBN7.2	14	19,412,944 - 19,429,364 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	19,412,156 - 19,429,362 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	19,402,436 - 19,418,732 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	20,721,300 - 20,737,596 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	19,423,675 - 19,440,028 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	21,039,990 - 21,056,413 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	21,039,990 - 21,056,452 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	20,949,817 - 20,966,236 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	20,992,199 - 21,008,582 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	20,986,833 - 21,008,580 (+)	NCBI
Celera	14	18,752,250 - 18,768,534 (+)	NCBI		Celera
Cytogenetic Map	14	p22	NCBI

Grsf1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955447	2,181,839 - 2,194,650 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955447	2,181,841 - 2,194,650 (+)	NCBI	ChiLan1.0	ChiLan1.0

GRSF1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	59,244,796 - 59,265,321 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	59,439,822 - 59,460,353 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	53,384,303 - 53,404,706 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	59,731,442 - 59,751,332 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

GRSF1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	13	60,088,198 - 60,102,292 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	13	60,089,429 - 60,100,099 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	13	59,822,523 - 59,837,048 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	13	60,894,060 - 60,908,822 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	13	60,890,136 - 60,909,008 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	13	60,508,786 - 60,523,316 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	13	60,000,666 - 60,014,991 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	13	61,147,887 - 61,162,260 (-)	NCBI		UU_Cfam_GSD_1.0

Grsf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	15,509,544 - 15,526,758 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936598	3,961,670 - 3,977,317 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936598	3,961,051 - 3,978,791 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GRSF1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	67,586,738 - 67,607,689 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	67,586,935 - 67,607,422 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	71,496,048 - 71,515,301 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GRSF1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	19,329,379 - 19,350,722 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	19,334,131 - 19,350,522 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666084	3,530,474 - 3,551,249 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Grsf1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624890	2,144,071 - 2,165,093 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624890	2,146,100 - 2,165,084 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Grsf1
893 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	1056
Count of miRNA genes:	468
Interacting mature miRNAs:	554
Transcripts:	ENSMUST00000078945, ENSMUST00000113234, ENSMUST00000130408, ENSMUST00000133532, ENSMUST00000137725, ENSMUST00000150438, ENSMUST00000153565
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4140990	Lgq6_m	late growth QTL 6 (mouse)			Not determined			32133234	100777931	Mouse
1301010	ahl2_m	age related hearing loss 2 (mouse)			Not determined		5	62650568	96650688	Mouse
1301399	Cpfd3_m	cerebellum pattern fissures (mouse)			Not determined		5	87386871	121387065	Mouse
12910784	Pwgrq15_m	post-weaning growth rate QTL 15 (mouse)					5	77175823	97658215	Mouse
1301524	Lmb2_m	lupus in MRL and B6 F2 cross (mouse)			Not determined		5	37581488	112465722	Mouse
25314315	Mlh1fc4_m	MLH1 foci count 4 (mouse)					5	74460661	132528839	Mouse
10045972	Tir5_m	trypanosome infection response 5 (mouse)			Not determined		5	63705442	104387065	Mouse
1301126	Bwem1_m	body weight day 30 males 1 (mouse)			Not determined		5	87386871	121387065	Mouse
4141219	W10q16_m	weight 10 weeks QTL 16 (mouse)			Not determined			32133234	100777931	Mouse
10043962	Obq27_m	obesity QTL 27 (mouse)			Not determined		5	56285655	90285655	Mouse
12910816	Ogrq2_m	overall growth rate QTL 2 (mouse)					5	77175823	97658215	Mouse
1301691	Cdcs10_m	cytokine deficiency colitis susceptibility 10 (mouse)			Not determined		5	76280786	110280917	Mouse
11041665	Lmr24_m	leishmaniasis resistance 24 (mouse)					5	52694462	107321041	Mouse
12738408	Lfibq5_m	liver fibrosis QTL 5 (mouse)					5	84783853	89966041	Mouse
10043958	Chldq12_m	cholesterol and HDL QTL 12 (mouse)			Not determined		5	87386871	121387065	Mouse
26884395	Humsd2_m	humerus midshaft diameter 2, 10 week (mouse)					5	70057343	132528839	Mouse
11252124	Modvl6_m	modifier of vacuolated lens 6 (mouse)					5	62650568	96650688	Mouse
1301419	Cypr3_m	cytokine production 3 (mouse)			Not determined		5	81019649	115019803	Mouse
11341716	Rvfs3_m	Rift Valley fever susceptibility 3 (mouse)					5	26441234	138455402	Mouse
13506928	Recrq8_m	recombination rate in male meiosis QTL 8 (mouse)					5	74460661	132528839	Mouse
1301843	Listr1_m	listeriosis resistance 1 (mouse)			Not determined		5	60246081	94246203	Mouse
10043993	Hbnr10_m	Heligmosomoides bakeri nematode resistance 10 (mouse)			Not determined		5	72418876	106419011	Mouse
27226719	Tibw6_m	tibia width 6, proximal, 16 week (mouse)					5	72857343	139985755	Mouse
10401246	Bglu13_m	blood glucose level 13 (mouse)			Not determined		5	79539640	113539786	Mouse
4141438	Skmw13_m	skeletal muscle weight 13 (mouse)			Not determined		5	76190263	110190479	Mouse
1301713	Dbsty2_m	diabesity 2 (mouse)			Not determined		5	76445064	110445225	Mouse
11041899	Lmr24a_m	leishmaniasis resistance 24a (mouse)					5	52694462	107321041	Mouse
10401245	Bglu18_m	blood glucose level 18 (mouse)			Not determined		5	82838468	116838597	Mouse
4142064	Tmc1m4_m	Tmc1 modifier 4 (mouse)			Not determined		5	54500177	127001072	Mouse
1300931	Cocrb6_m	cocaine related behavior 6 (mouse)			Not determined		5	76445064	110445225	Mouse
4142317	Rgcs1_m	retinal ganglion cell susceptible 1 (mouse)			Not determined			55388334	108762627	Mouse
1300801	Drb2_m	dopamine receptor binding 2 (mouse)			Not determined		5	87386871	121387065	Mouse
1301829	Thyls2_m	thymic lymphoma susceptibility 2 (mouse)			Not determined		5	76445064	110445225	Mouse
12904740	M1fscn2_m	modifier 1 of Fscn2 (mouse)					5	66529661	100529661	Mouse
10755524	Mono1_m	monocyte differential 1 (mouse)					5	80849259	114849259	Mouse
4142428	Modvl1_m	modifier of vacuolated lens 1 (mouse)			Not determined			62650568	96650688	Mouse
1357431	Cia27_m	collagen induced arthritis 27 (mouse)			Not determined		5	75315348	120018629	Mouse
11040589	Lmr3a_m	leishmaniasis resistance 3a (mouse)					5	59602801	93602980	Mouse
11040590	Lmr3b_m	leishmaniasis resistance 3b (mouse)					5	59602801	93602980	Mouse
11040591	Lmr3c_m	leishmaniasis resistance 3c (mouse)					5	59602801	93602980	Mouse
12904739	M2fscn2_m	modifier 2 of FSCN2 (mouse)					5	66529661	100529661	Mouse
1301243	Bmd2_m	bone mineral density 2 (mouse)			Not determined		5	55388334	100455525	Mouse
1300986	Hdlq2_m	HDL QTL 2 (mouse)			Not determined		5	76280786	110280917	Mouse
11049560	Lmr24d_m	leishmaniasis resistance 24d (mouse)					5	64374877	98374996	Mouse
13464249	Ahl16_m	age related hearing loss, early onset 16 (mouse)					5	76445064	110445225	Mouse
13464248	Ahl13_m	age related hearing loss, early onset 13 (mouse)					5	55645874	89645995	Mouse
13464250	Ahl15_m	age related hearing loss, early onset 15 (mouse)					5	62650568	96650688	Mouse
11040592	Lmr3d_m	leishmaniasis resistance 3d (mouse)					5	59602801	93602980	Mouse
13464247	Ahl14_m	age related hearing loss, early onset 14 (mouse)					5	60403062	94403160	Mouse
4141124	Dshv2_m	dorsal hippocampal volume 2 (mouse)			Not determined		5	75315348	98019803	Mouse
10044005	Ahl7_m	age related hearing loss 7 (mouse)			Not determined		5	58330502	92330641	Mouse
13464241	Ahl18_m	age related hearing loss, early onset 18 (mouse)					5	87386871	121387065	Mouse
4141505	Chlq14_m	circulating hormone level QTL 14 (mouse)			Not determined		5	76280786	110280917	Mouse
13464242	Ahl17_m	age related hearing loss, early onset 17 (mouse)					5	82838468	116838597	Mouse

BB232551

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	5	88,659,278 - 88,659,360	UniSTS	GRCm38
MGSCv37	5	89,088,303 - 89,088,385	UniSTS	GRCm37
Celera	5	86,808,477 - 86,808,559	UniSTS
Cytogenetic Map	5	E1	UniSTS
cM Map	5	48.0	UniSTS
Whitehead/MRC_RH	5	1112.52	UniSTS

C80280

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	5	88,659,549 - 88,659,663	UniSTS	GRCm38
MGSCv37	5	89,088,574 - 89,088,688	UniSTS	GRCm37
Celera	5	86,808,748 - 86,808,862	UniSTS
Cytogenetic Map	5	E1	UniSTS
cM Map	5	48.0	UniSTS
Whitehead/MRC_RH	5	1104.77	UniSTS

Grsf1

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	5	E1	UniSTS
cM Map	5	48.0	UniSTS

D5Wsu31e

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	5	88,659,501 - 88,659,664	UniSTS	GRCm38
MGSCv37	5	89,088,526 - 89,088,689	UniSTS	GRCm37
Celera	5	86,808,700 - 86,808,863	UniSTS
Cytogenetic Map	5	E1	UniSTS
cM Map	5	48.0	UniSTS

Grsf1

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	5	E1	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	NM_001098476	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_178700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC121541	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC160533	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK044889	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK045986	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK077782	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK089014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK168385	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK168459	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK181523	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK208573	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK210897	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK211991	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK218546	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK219758	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BX638109	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY066098	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466617	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CK391158	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000078945 ⟹ ENSMUSP00000077972

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	88,807,307 - 88,824,030 (-)	Ensembl
GRCm38.p6 Ensembl	5	88,659,448 - 88,676,171 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000113234 ⟹ ENSMUSP00000108860

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	88,807,317 - 88,823,525 (-)	Ensembl
GRCm38.p6 Ensembl	5	88,659,458 - 88,675,666 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000130408

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	88,810,394 - 88,819,264 (-)	Ensembl
GRCm38.p6 Ensembl	5	88,662,535 - 88,671,405 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000133532 ⟹ ENSMUSP00000114732

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	88,819,066 - 88,823,051 (-)	Ensembl
GRCm38.p6 Ensembl	5	88,671,207 - 88,675,192 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000137725

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	88,821,567 - 88,823,058 (-)	Ensembl
GRCm38.p6 Ensembl	5	88,673,708 - 88,675,199 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000150438 ⟹ ENSMUSP00000115589

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	88,820,502 - 88,823,101 (-)	Ensembl
GRCm38.p6 Ensembl	5	88,672,643 - 88,675,242 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000153565 ⟹ ENSMUSP00000123051

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	88,813,743 - 88,823,529 (-)	Ensembl
GRCm38.p6 Ensembl	5	88,665,884 - 88,675,670 (-)	Ensembl

RefSeq Acc Id:

NM_001098476 ⟹ NP_001091946

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	5	88,807,092 - 88,823,439 (-)	NCBI
GRCm38	5	88,659,233 - 88,675,580 (-)	NCBI
MGSCv37	5	89,088,262 - 89,105,196 (-)	RGD
Celera	5	86,808,432 - 86,825,419 (-)	NCBI
cM Map	5		ENTREZGENE

Sequence:

show sequence

GTTTTGTTCCCTCCGAGTCTGGGCGGTTGGGCAGTGTAAGTGTGGCTGGGGTGAATGTAGAGGCCTTGTTTCCCGCCGGGCCCATGGAATCCAAAACTACCTACCTGGAAGACCTCCCACCACTGCCT
GAGTACGAGTTGAGCCCATCCAAGCTAGGAGACGAGGTGGATGATGTTTATCTCATTCGAGCTCAGGGGCTGCCGTGGTCCTGCACTGTGGAAGATGTTCTTAACTTTTTCTCAGACTGCAGAATCCG
AAACAGTGAGAATGGAATACATTTCCTCCTAAATAGAGATGGGAAACGGAGGGGCGATGCCTTAATAGAGATGGAGTCCGAGCAGGATGTACAGAAGGCCTTAGAAAAGCACCGGATGTACATGGGGC
AGCGGTATGTGGAAGTGTATGAAATAAACAACGAAGATGTGGATGCCTTAATGAAGAGCCTGCAGGTCAAGCCTTCGCCTGTGCTCAGTGATGGTGTGGTCCGCCTGAGAGGACTTCCTTACAGCTGC
AATGAAAAGGACATTGTGGACTTCTTTGCAGGACTGAACATAGTAGACATTACTTTTGTGATGGACTATAGAGGGAGAAGAAAAACGGGGGAAGCCTATGTACAGTTTGAAGAACCAGAAATGGCCAA
CCAAGCGCTTCTAAAGCACAGGGAAGAAATTGGTAACCGATACATAGAGATATTTCCAAGCAGAAGGAATGAAGTTCGAACACATGTTGGATCTCATAAAGGAAAGAAAATGACATCGTCTCCTCCTA
CTAAATATATAACTGAACCAGAAGTGGTATTTGAGGAACATGAAGTAAATGAAGATATTCGGCCTATGACGGCTTTTGAGAGTGATAAAGAGATAGAATTGCCTAAGGAGATGTCAGAAAAACTTCCA
GAGGCTGTCGATTTTGGAACTCTGCCTTCCCTGCATTTTGTCCACATGAGAGGATTGCCTTTCCAAGCCAATGCCCAAGACATTATAAATTTCTTTGCTCCCCTGAAGCCTGTGAGAATCACCATGGA
ATACAGCTCCAGTGGGAAGGCCACTGGAGAAGCTGACGTGCACTTTGATACCCATGAGGATGCTGTTGCAGCCATGCTCAAGGATCGGTCCCATGTCCAACATAGGTATATTGAGCTGTTCCTAAATT
CATGTCCTAAAGGAAAATAAGACTTCAACAGACCCCAGAAAATAAGGATGAAGCAGGAAGCATCTCATTTGCACATCTCTCTGAGACGTGGAATACAAAGATCCAGTTGATTGGCAGCAACTGCTGGA
GAAAGGATCTGTGCATCTTAGTGCTGTGTTTACACACAGAAAGATTCGGTTTGGGATTATGAAATAAGCTACAAATTTAAAATTCTGTTCAAACAGTCCAGGTTGAGATTGAGAAAGTCTGGTCTGTG
TGACTTAGTTTTCCGTCCTGAGGCTCTGCTACAGACTAAGATGATGTTTCCACCCAGTGCCGCTCCTCAGATCCTTGCTCCCGCCTGTTGTTGCCTGTGATTGAGAGCTCTGATACAAACTCATGGAA
CACATTCACGGTGTATTTTTACCAAACACTCACCAAAGCAACAGAAGGTTTCAGAACTTTAATAAGCCAGTCTGATTTGGTCAAATAGCTTTTCATTTTATCTGTATTTGATTACTTAGGGATAGAAG
TTTTAAAAAATAGCAAACCACAGGTTAGTGAATGTAAGTGGCCACTCAGCAGTTAACGTCTTTAGAAACTTGGCCTCCCTAAGCCTTGACCTGAAGGCATTTGACATTGGTGCCTGTCTGTCAGTGTC
ATGGAAGTCTAGGCAACCTTCACTTTTTTTTCTTGGACAGACAAATCTTAAGGCTATTAGGTTTGAAATCGTAATGTGACATATCAAAGCAGTCCAGACTGGTAAGGACATTAATAGCTTCACTTGAA
TTGAACCAGCTCTAGATAGGGAAAACAATCTAAGTCCCCTCGTTTGCTTTTCCAGTGGGGTAGCCATCCCATACTTAGAACAGGTAGGGGTGCCTTGCTTAAATCAAACTAGCATTTCATGTATAATT
GTGTGAAAGATCTGTGGATAAAGCTGTATTTCTGTCACATTGTGGCAGCACCTCTGCTTTAATACTAAATAGCTTGTTATTTAAATATTGGACAAAATGGCTGGCTTCAAAAATAGTCATTAATAAAC
TTAACTTTATGTATACCTGTGTAGAAGAATCAAAGTTCTGTATATTTTCTTTACCTTGTTCCTATTCTCAGGGTGACAGCTACCACCAAGAGATGATAAATCTCACGCTTCAGACTGAATTTTCTGAG
CTTTCACAGGTGGTAACCTGGAAGAGACGTGCATTGCTTAGTACATAGCCACATGTGATTACCAGCTAAGGGGCAAAATTACTGTTCTGTAGACAATAAATGAAAGTTTGTTTTAAGTTGG

hide sequence

RefSeq Acc Id:

NM_178700 ⟹ NP_848815

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	5	88,807,092 - 88,824,030 (-)	NCBI
GRCm38	5	88,659,233 - 88,676,171 (-)	NCBI
MGSCv37	5	89,088,262 - 89,105,196 (-)	RGD
Celera	5	86,808,432 - 86,825,419 (-)	NCBI
cM Map	5		ENTREZGENE

Sequence:

show sequence

ACTTCCCCTCCGCTCGCGCCACAGCGGCCACCTCCAGGCCCCGCGCCGCCTCCGGAGCCGATGGCCGGGACGCGCTGGGTGCTAGGCGCGTTGCTCCGGGGCTGCGGCTGCAACTGCAGCAGCTGCCG
GCGGACCGGCGCCGCCTGCCTGCCTTTCTACTCCGCCGCCGGCACCTTCCCGTCGGGCGTCTCTGGCCGCCGCCGCCTGCTGCTACTCCTCGGGGCCGCCGCGGCCGCCGCTTCGCAGACGCGGGGCC
TGCAGCTCGGGCCTGCGGCCGCCGGGAGGCTGGCGGGTCCCATCCCTGCCCGTCCCTCCGCCGCCGCGGCCGCCGCCGCGTCCTACTCGGCCCTGCGCGCCCCGCTGTTTCCGCGATCGCTGGCAGCC
GCCGCGGGCCCGGCGCGGGGTTACAGTCAGGAATCCAAAACTACCTACCTGGAAGACCTCCCACCACTGCCTGAGTACGAGTTGAGCCCATCCAAGCTAGGAGACGAGGTGGATGATGTTTATCTCAT
TCGAGCTCAGGGGCTGCCGTGGTCCTGCACTGTGGAAGATGTTCTTAACTTTTTCTCAGACTGCAGAATCCGAAACAGTGAGAATGGAATACATTTCCTCCTAAATAGAGATGGGAAACGGAGGGGCG
ATGCCTTAATAGAGATGGAGTCCGAGCAGGATGTACAGAAGGCCTTAGAAAAGCACCGGATGTACATGGGGCAGCGGTATGTGGAAGTGTATGAAATAAACAACGAAGATGTGGATGCCTTAATGAAG
AGCCTGCAGGTCAAGCCTTCGCCTGTGCTCAGTGATGGTGTGGTCCGCCTGAGAGGACTTCCTTACAGCTGCAATGAAAAGGACATTGTGGACTTCTTTGCAGGACTGAACATAGTAGACATTACTTT
TGTGATGGACTATAGAGGGAGAAGAAAAACGGGGGAAGCCTATGTACAGTTTGAAGAACCAGAAATGGCCAACCAAGCGCTTCTAAAGCACAGGGAAGAAATTGGTAACCGATACATAGAGATATTTC
CAAGCAGAAGGAATGAAGTTCGAACACATGTTGGATCTCATAAAGGAAAGAAAATGACATCGTCTCCTCCTACTAAATATATAACTGAACCAGAAGTGGTATTTGAGGAACATGAAGTAAATGAAGAT
ATTCGGCCTATGACGGCTTTTGAGAGTGATAAAGAGATAGAATTGCCTAAGGAGATGTCAGAAAAACTTCCAGAGGCTGTCGATTTTGGAACTCTGCCTTCCCTGCATTTTGTCCACATGAGAGGATT
GCCTTTCCAAGCCAATGCCCAAGACATTATAAATTTCTTTGCTCCCCTGAAGCCTGTGAGAATCACCATGGAATACAGCTCCAGTGGGAAGGCCACTGGAGAAGCTGACGTGCACTTTGATACCCATG
AGGATGCTGTTGCAGCCATGCTCAAGGATCGGTCCCATGTCCAACATAGGTATATTGAGCTGTTCCTAAATTCATGTCCTAAAGGAAAATAAGACTTCAACAGACCCCAGAAAATAAGGATGAAGCAG
GAAGCATCTCATTTGCACATCTCTCTGAGACGTGGAATACAAAGATCCAGTTGATTGGCAGCAACTGCTGGAGAAAGGATCTGTGCATCTTAGTGCTGTGTTTACACACAGAAAGATTCGGTTTGGGA
TTATGAAATAAGCTACAAATTTAAAATTCTGTTCAAACAGTCCAGGTTGAGATTGAGAAAGTCTGGTCTGTGTGACTTAGTTTTCCGTCCTGAGGCTCTGCTACAGACTAAGATGATGTTTCCACCCA
GTGCCGCTCCTCAGATCCTTGCTCCCGCCTGTTGTTGCCTGTGATTGAGAGCTCTGATACAAACTCATGGAACACATTCACGGTGTATTTTTACCAAACACTCACCAAAGCAACAGAAGGTTTCAGAA
CTTTAATAAGCCAGTCTGATTTGGTCAAATAGCTTTTCATTTTATCTGTATTTGATTACTTAGGGATAGAAGTTTTAAAAAATAGCAAACCACAGGTTAGTGAATGTAAGTGGCCACTCAGCAGTTAA
CGTCTTTAGAAACTTGGCCTCCCTAAGCCTTGACCTGAAGGCATTTGACATTGGTGCCTGTCTGTCAGTGTCATGGAAGTCTAGGCAACCTTCACTTTTTTTTCTTGGACAGACAAATCTTAAGGCTA
TTAGGTTTGAAATCGTAATGTGACATATCAAAGCAGTCCAGACTGGTAAGGACATTAATAGCTTCACTTGAATTGAACCAGCTCTAGATAGGGAAAACAATCTAAGTCCCCTCGTTTGCTTTTCCAGT
GGGGTAGCCATCCCATACTTAGAACAGGTAGGGGTGCCTTGCTTAAATCAAACTAGCATTTCATGTATAATTGTGTGAAAGATCTGTGGATAAAGCTGTATTTCTGTCACATTGTGGCAGCACCTCTG
CTTTAATACTAAATAGCTTGTTATTTAAATATTGGACAAAATGGCTGGCTTCAAAAATAGTCATTAATAAACTTAACTTTATGTATACCTGTGTAGAAGAATCAAAGTTCTGTATATTTTCTTTACCT
TGTTCCTATTCTCAGGGTGACAGCTACCACCAAGAGATGATAAATCTCACGCTTCAGACTGAATTTTCTGAGCTTTCACAGGTGGTAACCTGGAAGAGACGTGCATTGCTTAGTACATAGCCACATGT
GATTACCAGCTAAGGGGCAAAATTACTGTTCTGTAGACAATAAATGAAAGTTTGTTTTAAGTTGG

hide sequence


Protein RefSeqs	NP_001091946	(Get FASTA)	NCBI Sequence Viewer
	NP_848815	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAC32129	(Get FASTA)	NCBI Sequence Viewer
	BAC32561	(Get FASTA)	NCBI Sequence Viewer
	BAC37006	(Get FASTA)	NCBI Sequence Viewer
	BAC40702	(Get FASTA)	NCBI Sequence Viewer
	EDL05349	(Get FASTA)	NCBI Sequence Viewer
	EDL05350	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000077972
	ENSMUSP00000077972.6
	ENSMUSP00000108860
GenBank Protein	Q8C5Q4	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_848815 ⟸ NM_178700
- Peptide Label:	isoform 1
- UniProtKB:	Q8C5Q4 (UniProtKB/Swiss-Prot), Q8BRG7 (UniProtKB/Swiss-Prot), Q8BR05 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MAGTRWVLGALLRGCGCNCSSCRRTGAACLPFYSAAGTFPSGVSGRRRLLLLLGAAAAAASQTRGLQLGPAAAGRLAGPIPARPSAAAAAAASYSALRAPLFPRSLAAAAGPARGYSQESKTTYLEDL PPLPEYELSPSKLGDEVDDVYLIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKPSPVLSDGVVRLRGL PYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSHKGKKMTSSPPTKYITEPEVVFEEHEVNEDIRPMTAFESDKEIELPKEMS EKLPEAVDFGTLPSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELFLNSCPKGK hide sequence

RefSeq Acc Id:	NP_001091946 ⟸ NM_001098476
- Peptide Label:	isoform 2
- UniProtKB:	E9Q179 (UniProtKB/TrEMBL), Q8C298 (UniProtKB/TrEMBL)
- Sequence:	show sequence MESKTTYLEDLPPLPEYELSPSKLGDEVDDVYLIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKPSPV LSDGVVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSHKGKKMTSSPPTKYITEPEVVFEEHEVNEDIRPMTAFES DKEIELPKEMSEKLPEAVDFGTLPSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELFLNSCPKGK hide sequence

Ensembl Acc Id:

ENSMUSP00000115589 ⟸ ENSMUST00000150438

Ensembl Acc Id:

ENSMUSP00000108860 ⟸ ENSMUST00000113234

Ensembl Acc Id:

ENSMUSP00000114732 ⟸ ENSMUST00000133532

Protein Domains

RRM

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q8C5Q4-F1-model_v2	AlphaFold	Q8C5Q4	1-479	view protein structure

RGD ID:

6887084

Promoter ID:

EPDNEW_M6993

Type:

initiation region

Name:

Grsf1_2

Description:

Mus musculus G-rich RNA sequence binding factor 1 , transcriptvariant 1, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M6994

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	5	88,675,548 - 88,675,608	EPDNEW

RGD ID:

6887086

Promoter ID:

EPDNEW_M6994

Type:

initiation region

Name:

Grsf1_1

Description:

Mus musculus G-rich RNA sequence binding factor 1 , transcriptvariant 1, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M6993

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	5	88,676,171 - 88,676,231	EPDNEW

RGD ID:

6837671

Promoter ID:

MM_KWN:42802

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Kidney

Transcripts:

OTTMUST00000062126

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	5	89,099,731 - 89,100,231 (-)	MPROMDB

RGD ID:

6837670

Promoter ID:

MM_KWN:42803

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4

Transcripts:

ENSMUST00000113234, NM_178700, OTTMUST00000062122, OTTMUST00000062123, OTTMUST00000062124, OTTMUST00000062125

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	5	89,104,071 - 89,105,297 (-)	MPROMDB

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000044221	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000078945	ENTREZGENE
	ENSMUST00000078945.12	UniProtKB/Swiss-Prot
	ENSMUST00000113234	ENTREZGENE
Gene3D-CATH	3.30.70.330	UniProtKB/Swiss-Prot
InterPro	ESRP	UniProtKB/Swiss-Prot
	GRSF-1_RRM2	UniProtKB/Swiss-Prot
	GRSF1_RRM1	UniProtKB/Swiss-Prot
	GRSF1_RRM3	UniProtKB/Swiss-Prot
	Nucleotide-bd_a/b_plait_sf	UniProtKB/Swiss-Prot
	RBD_domain_sf	UniProtKB/Swiss-Prot
	RRM_dom	UniProtKB/Swiss-Prot
KEGG Report	mmu:231413	UniProtKB/Swiss-Prot
MGD	MGI:106479	ENTREZGENE
NCBI Gene	Grsf1	ENTREZGENE
PANTHER	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED	UniProtKB/Swiss-Prot
Pfam	RRM_1	UniProtKB/Swiss-Prot
PhenoGen	Grsf1	PhenoGen
PROSITE	RRM	UniProtKB/Swiss-Prot
SMART	RRM	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF54928	UniProtKB/Swiss-Prot
UniProt	D3YUN1_MOUSE	UniProtKB/TrEMBL
	D3YV30_MOUSE	UniProtKB/TrEMBL
	D3YZS7_MOUSE	UniProtKB/TrEMBL
	E9Q179	ENTREZGENE, UniProtKB/TrEMBL
	GRSF1_MOUSE	UniProtKB/Swiss-Prot
	Q8BR05	ENTREZGENE
	Q8BRG7	ENTREZGENE
	Q8C298	ENTREZGENE, UniProtKB/TrEMBL
	Q8C5Q4	ENTREZGENE
UniProt Secondary	Q8BR05	UniProtKB/Swiss-Prot
	Q8BRG7	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2024-08-21	Grsf1	G-rich RNA sequence binding factor 1	D5Wsu31e	DNA segment, Chr 5, Wayne State University 31, expressed	Symbol and/or name change	5135510	APPROVED
2024-08-21	D5Wsu31e	DNA segment, Chr 5, Wayne State University 31, expressed	Grsf1	G-rich RNA sequence binding factor 1	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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Mammalian Phenotype