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Gene: Gpank1 (G patch domain and ankyrin repeats 1) Mus musculus

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Symbol:

Gpank1

Name:

G patch domain and ankyrin repeats 1

RGD ID:

1321767

MGI Page

MGI

Description:

Predicted to enable nucleic acid binding activity. Is expressed in blastocyst; central nervous system; gut; male reproductive gland or organ; and sensory organ. Orthologous to human GPANK1 (G-patch domain and ankyrin repeats 1).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Bat; Bat-4; Bat4; D17H6S54; D17H6S54E; G patch domain and ankyrin repeat-containing protein 1; G patch domain and ankyrin repeats-containing protein 1; G5; HLA-B associated transcript 4; HLA-B-associated transcript 4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	GPANK1 (G-patch domain and ankyrin repeats 1)	HGNC	Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Gpank1 (G patch domain and ankyrin repeats 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Gpank1 (G-patch domain and ankyrin repeats 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	GPANK1 (G-patch domain and ankyrin repeats 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	GPANK1 (G-patch domain and ankyrin repeats 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Gpank1 (G-patch domain and ankyrin repeats 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	GPANK1 (G-patch domain and ankyrin repeats 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	GPANK1 (G-patch domain and ankyrin repeats 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Gpank1 (G-patch domain and ankyrin repeats 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Gpank1 (G patch domain and ankyrin repeats 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	GPANK1 (G-patch domain and ankyrin repeats 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	gpank1 (G patch domain and ankyrin repeats 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Caenorhabditis elegans (roundworm):	ZK1320.7	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	CG8152	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	gpank1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Related Pseudogenes:

Gm5628

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	35,340,472 - 35,343,791 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	35,340,431 - 35,343,790 (+)	Ensembl		GRCm39 Ensembl
GRCm38	17	35,121,448 - 35,124,815 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	35,121,455 - 35,124,814 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	35,258,441 - 35,261,760 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	34,731,008 - 34,732,862 (+)	NCBI		MGSCv36	mm8
Celera	17	38,218,446 - 38,221,764 (+)	NCBI		Celera
Cytogenetic Map	17	B1	NCBI
cM Map	17	18.59	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Gpank1	Mouse	megacolon		ISO	RGD:1321766	8554872	ClinVar Annotator: match by term: Megacolon	ClinVar	PMID:21681106
Gpank1	Mouse	proteasome-associated autoinflammatory syndrome 1		ISO	RGD:1321766	8554872	ClinVar Annotator: match by term: Proteasome-associated autoinflammatory syndrome 1	ClinVar	PMID:28492532

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Gpank1	Mouse	17beta-estradiol	decreases expression	EXP		6480464	Estradiol results in decreased expression of GPANK1 mRNA	CTD	PMID:39298647
Gpank1	Mouse	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	RGD:1303304	6480464	Tetrachlorodibenzodioxin affects the expression of GPANK1 mRNA	CTD	PMID:22298810
Gpank1	Mouse	2,3,7,8-tetrachlorodibenzodioxine	increases expression	ISO	RGD:1303304	6480464	Tetrachlorodibenzodioxin results in increased expression of GPANK1 mRNA	CTD	PMID:33387578
Gpank1	Mouse	2,3,7,8-tetrachlorodibenzodioxine	affects expression	EXP		6480464	Tetrachlorodibenzodioxin affects the expression of GPANK1 mRNA	CTD	PMID:24680724
Gpank1	Mouse	2,4-dinitrotoluene	affects expression	ISO	RGD:1303304	6480464	2,4-dinitrotoluene affects the expression of GPANK1 mRNA	CTD	PMID:21346803
Gpank1	Mouse	2,6-dinitrotoluene	affects expression	ISO	RGD:1303304	6480464	2,6-dinitrotoluene affects the expression of GPANK1 mRNA	CTD	PMID:21346803
Gpank1	Mouse	4,4'-sulfonyldiphenol	decreases expression	EXP		6480464	bisphenol S results in decreased expression of GPANK1 mRNA	CTD	PMID:39298647
Gpank1	Mouse	aflatoxin B1	decreases expression	ISO	RGD:1303304	6480464	Aflatoxin B1 results in decreased expression of GPANK1 mRNA	CTD	PMID:33354967
Gpank1	Mouse	all-trans-retinoic acid	increases expression	ISO	RGD:1321766	6480464	Tretinoin results in increased expression of GPANK1 mRNA	CTD	PMID:33167477
Gpank1	Mouse	arsane	affects methylation	ISO	RGD:1321766	6480464	Arsenic affects the methylation of GPANK1 gene	CTD	PMID:25304211
Gpank1	Mouse	arsenic atom	affects methylation	ISO	RGD:1321766	6480464	Arsenic affects the methylation of GPANK1 gene	CTD	PMID:25304211
Gpank1	Mouse	atrazine	decreases expression	ISO	RGD:1321766	6480464	Atrazine results in decreased expression of GPANK1 mRNA	CTD	PMID:22378314
Gpank1	Mouse	benzo[a]pyrene	increases methylation	ISO	RGD:1321766	6480464	Benzo(a)pyrene results in increased methylation of GPANK1 5' UTR; Benzo(a)pyrene results in increased methylation of more ...	CTD	PMID:27901495
Gpank1	Mouse	benzo[e]pyrene	decreases methylation	ISO	RGD:1321766	6480464	benzo(e)pyrene results in decreased methylation of GPANK1 exon	CTD	PMID:30157460
Gpank1	Mouse	bisphenol A	increases expression	ISO	RGD:1303304	6480464	bisphenol A results in increased expression of GPANK1 mRNA	CTD	PMID:25181051
Gpank1	Mouse	bortezomib	increases expression	ISO	RGD:1321766	6480464	Bortezomib results in increased expression of GPANK1 mRNA	CTD	PMID:20977926
Gpank1	Mouse	carbon nanotube	decreases expression	EXP		6480464	Nanotubes, Carbon analog results in decreased expression of GPANK1 mRNA	CTD	PMID:25554681
Gpank1	Mouse	copper(II) sulfate	decreases expression	ISO	RGD:1321766	6480464	Copper Sulfate results in decreased expression of GPANK1 mRNA	CTD	PMID:19549813
Gpank1	Mouse	cyclosporin A	increases expression	ISO	RGD:1321766	6480464	Cyclosporine results in increased expression of GPANK1 mRNA	CTD	PMID:20106945\|PMID:27989131
Gpank1	Mouse	ethanol	increases expression	EXP		6480464	Ethanol results in increased expression of GPANK1 mRNA	CTD	PMID:30319688
Gpank1	Mouse	gentamycin	decreases expression	ISO	RGD:1303304	6480464	Gentamicins results in decreased expression of GPANK1 mRNA	CTD	PMID:33387578
Gpank1	Mouse	GSK-J4	decreases expression	ISO	RGD:1321766	6480464	GSK-J4 results in decreased expression of GPANK1 mRNA	CTD	PMID:29301935
Gpank1	Mouse	hydrogen peroxide	affects expression	ISO	RGD:1321766	6480464	Hydrogen Peroxide affects the expression of GPANK1 mRNA	CTD	PMID:20044591
Gpank1	Mouse	menadione	affects expression	ISO	RGD:1321766	6480464	Vitamin K 3 affects the expression of GPANK1 mRNA	CTD	PMID:20044591
Gpank1	Mouse	methapyrilene	decreases methylation	ISO	RGD:1321766	6480464	Methapyrilene results in decreased methylation of GPANK1 exon	CTD	PMID:30157460
Gpank1	Mouse	methyl methanesulfonate	increases expression	ISO	RGD:1321766	6480464	Methyl Methanesulfonate results in increased expression of GPANK1 mRNA	CTD	PMID:23649840
Gpank1	Mouse	paracetamol	affects expression	EXP		6480464	Acetaminophen affects the expression of GPANK1 mRNA	CTD	PMID:17562736
Gpank1	Mouse	perfluorooctane-1-sulfonic acid	multiple interactions	EXP		6480464	[perfluorooctane sulfonic acid co-treated with Pectins] results in decreased expression of GPANK1 mRNA	CTD	PMID:36331819
Gpank1	Mouse	quercetin	increases expression	ISO	RGD:1321766	6480464	Quercetin results in increased expression of GPANK1 mRNA	CTD	PMID:21632981
Gpank1	Mouse	sodium arsenite	increases expression	ISO	RGD:1321766	6480464	sodium arsenite results in increased expression of GPANK1 mRNA	CTD	PMID:38568856
Gpank1	Mouse	Soman	decreases expression	ISO	RGD:1303304	6480464	Soman results in decreased expression of GPANK1 mRNA	CTD	PMID:19281266
Gpank1	Mouse	thioacetamide	decreases expression	ISO	RGD:1303304	6480464	Thioacetamide results in decreased expression of GPANK1 mRNA	CTD	PMID:34492290
Gpank1	Mouse	trichloroethene	increases expression	ISO	RGD:1303304	6480464	Trichloroethylene results in increased expression of GPANK1 mRNA	CTD	PMID:33387578
Gpank1	Mouse	triphenyl phosphate	affects expression	ISO	RGD:1321766	6480464	triphenyl phosphate affects the expression of GPANK1 mRNA	CTD	PMID:37042841
Gpank1	Mouse	tungsten	increases expression	EXP		6480464	Tungsten results in increased expression of GPANK1 mRNA	CTD	PMID:30912803
Gpank1	Mouse	urethane	decreases expression	ISO	RGD:1321766	6480464	Urethane results in decreased expression of GPANK1 mRNA	CTD	PMID:28818685
Gpank1	Mouse	valproic acid	affects expression	EXP		6480464	Valproic Acid affects the expression of GPANK1 mRNA	CTD	PMID:17292431

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Gpank1	Mouse	biological_process	involved_in	ND		2290270		MGI	GO_REF:0000015

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Gpank1	Mouse	cellular_component	is_active_in	ND		2290270		MGI	GO_REF:0000015

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Gpank1	Mouse	nucleic acid binding	enables	IEA	InterPro:IPR000467	2290270		InterPro	GO_REF:0000002
Gpank1	Mouse	protein binding	enables	IPI	PR:Q61937	2290270	PMID:15596447	MGI	PMID:15596447

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Gpank1	Mouse	decreased pulmonary ventilation		IEA		5509061		MGI
Gpank1	Mouse	increased pulmonary ventilation		IEA		5509061		MGI
Gpank1	Mouse	increased tidal volume		IEA		5509061		MGI

#	Reference Title	Reference Citation
1.	Functional annotation of a full-length mouse cDNA collection.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2.	MGDs mouse GO annotations	MGD data from the GO Consortium
3.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:1351875	PMID:7993390	PMID:8199408	PMID:9021146	PMID:9196000	PMID:10349636	PMID:10469308	PMID:10871872	PMID:10922068	PMID:11042159	PMID:11076861	PMID:12477932
PMID:14610273	PMID:14656967	PMID:15596447	PMID:16033648	PMID:16141072	PMID:16141073	PMID:16325481	PMID:18799693	PMID:20059953	PMID:21267068	PMID:24194600	PMID:27084889
PMID:27626380	PMID:38355793

Gpank1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	35,340,472 - 35,343,791 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	35,340,431 - 35,343,790 (+)	Ensembl		GRCm39 Ensembl
GRCm38	17	35,121,448 - 35,124,815 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	35,121,455 - 35,124,814 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	35,258,441 - 35,261,760 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	34,731,008 - 34,732,862 (+)	NCBI		MGSCv36	mm8
Celera	17	38,218,446 - 38,221,764 (+)	NCBI		Celera
Cytogenetic Map	17	B1	NCBI
cM Map	17	18.59	NCBI

GPANK1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	31,661,228 - 31,666,283 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	31,661,228 - 31,666,283 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	31,629,005 - 31,634,060 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	31,737,841 - 31,741,142 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	31,737,841 - 31,741,142	NCBI
Celera	6	33,228,083 - 33,231,384 (-)	NCBI		Celera
Cytogenetic Map	6	p21.33	NCBI
HuRef	6	31,415,231 - 31,420,285 (-)	NCBI		HuRef
CHM1_1	6	31,631,142 - 31,636,196 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	31,514,261 - 31,519,317 (-)	NCBI		T2T-CHM13v2.0

Gpank1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	3,702,309 - 3,705,476 (-)	NCBI		GRCr8
mRatBN7.2	20	3,697,641 - 3,700,814 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	3,697,641 - 3,700,858 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	4,396,611 - 4,399,666 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	3,758,669 - 3,761,724 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	4,296,557 - 4,299,612 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	5,113,232 - 5,116,382 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	5,113,339 - 5,116,382 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	7,186,483 - 7,189,641 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	3,761,295 - 3,764,338 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	20	3,763,020 - 3,763,294 (-)	NCBI
Celera	20	4,324,958 - 4,328,001 (+)	NCBI		Celera
Cytogenetic Map	20	p12	NCBI

Gpank1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955437	207,735 - 211,104 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955437	207,563 - 211,374 (-)	NCBI	ChiLan1.0	ChiLan1.0

GPANK1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	46,139,122 - 46,143,033 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	42,100,639 - 42,104,541 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	31,323,258 - 31,327,461 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	32,213,136 - 32,217,344 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	32,213,136 - 32,217,344 (-)	Ensembl	panpan1.1		panPan2

GPANK1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	1,146,339 - 1,150,055 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	1,146,376 - 1,148,566 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	1,282,514 - 1,286,281 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	1,291,309 - 1,295,074 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	1,291,346 - 1,293,551 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	1,150,647 - 1,153,990 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	1,217,914 - 1,221,677 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	1,284,990 - 1,288,754 (-)	NCBI		UU_Cfam_GSD_1.0

Gpank1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	35,696,045 - 35,699,317 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936727	1,863,401 - 1,865,118 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936727	1,862,960 - 1,865,299 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GPANK1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	23,777,118 - 23,780,851 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	23,777,104 - 23,780,835 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	27,471,121 - 27,474,857 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GPANK1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	40,358,652 - 40,362,734 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	40,359,961 - 40,362,547 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666044	31,572,930 - 31,577,278 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Gpank1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	24,538,634 - 24,545,561 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624754	24,537,770 - 24,541,845 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Predicted Target Of

	Summary Value
Count of predictions:	1231
Count of miRNA genes:	543
Interacting mature miRNAs:	635
Transcripts:	ENSMUST00000052167, ENSMUST00000165306, ENSMUST00000173043, ENSMUST00000173380, ENSMUST00000177018
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10045977	Tir9_m	trypanosome infection response 9 (mouse)			Not determined		17	27878119	43885114	Mouse
26884379	Skwq5_m	skull length QTL 5, 5 week (mouse)					17	33118974	54107028	Mouse
1300885	Mbis4_m	Mycobacterium bovis-induced systemic lupus erythematosus 4 (mouse)			Not determined		17	35175817	70165926	Mouse
1300890	Bhr3_m	bronchial hyperresponsiveness 3 (mouse)			Not determined		17	3974890	48866091	Mouse
11075105	Modc1_m	modifier of Odc1 (mouse)					17	27715792	45622654	Mouse
1300995	Fembrs4_m	femur breaking strength 4 (mouse)			Not determined		17	15061652	49061760	Mouse
15039348	Nmrs37_m	NAFLD-associated magnetic resonance shift 37 (mouse)					17	27815209	61815209	Mouse
4141357	Mrdq1_m	modifier of retinal degeneration QTL 1 (mouse)			Not determined			30987903	48039703	Mouse
1302152	Skull25_m	skull morphology 25 (mouse)			Not determined		17	16819721	50819843	Mouse
1302028	Asbb3_m	autoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)			Not determined		17	10878119	44878219	Mouse
15039354	Nmrs36_m	NAFLD-associated magnetic resonance shift 36 (mouse)					17	19145025	53145025	Mouse
4141215	Mnic1_m	macronutrient intake, carbohydrate 1 (mouse)			Not determined			4854752	45670266	Mouse
1300787	Cd8mts5_m	CD8 memory T cell subset 5 (mouse)			Not determined		17	8584914	42585149	Mouse
13524847	Asrq8a_m	acoustic startle response 8a (mouse)					17	12646961	46646961	Mouse
1300914	Pcir4_m	periosteal circumference 4 (mouse)			Not determined		17	15061652	49061760	Mouse
13452396	Leusq3_m	leucocytosis susceptibility QTL 3 (mouse)					17	17462208	51462345	Mouse
13452399	Leusq6_m	leucocytosis susceptibility QTL 6 (mouse)					17	17462208	51462345	Mouse
1300535	Char3_m	P. chabaudi malaria resistance QTL 3 (mouse)			Not determined		17	17462208	51462345	Mouse
4140955	Plgr1_m	plague resistance locus 1 (mouse)			Not determined			31033500	65033630	Mouse
1302070	Tbbmd7_m	total body bone mineral density 7 (mouse)			Not determined		17	15061652	49061760	Mouse
10412214	Sxbq3_m	SGC/Knj cross B6 QTL 3 (mouse)			Not determined		17	17462208	51462345	Mouse
10412083	Sm2_m	susceptibility to Schistosoma mansoni infection 2 (mouse)			Not determined		17	17029943	51030078	Mouse
10412204	Bbaa29_m	B.burgdorferi-associated arthritis 29 (mouse)			Not determined		17	26051185	60051352	Mouse
10043949	Pbft7_m	percent body fat 7 (mouse)			Not determined		17	6893936	40893936	Mouse
4141067	Hbnr2_m	Heligmosomoides bakeri nematode resistance 2 (mouse)			Not determined			11885971	45886119	Mouse
12904946	Tammq8_m	tibialis anterior muscle mass QTL 8 (mouse)					17	12451787	46451787	Mouse
10412198	Sst5_m	susceptibility to tuberculosis 5 (mouse)			Not determined		17	25076583	55712970	Mouse
4142342	Lfnq4_m	lung function QTL 4 (mouse)			Not determined			11206484	39364059	Mouse
10412196	Bbaa28_m	B.burgdorferi-associated arthritis 28 (mouse)			Not determined		17	25584914	43976235	Mouse
1301935	Skull24_m	skull morphology 24 (mouse)			Not determined		17	8584914	42585149	Mouse
1302189	Dps3_m	delta power in slow-wave sleep 3 (mouse)			Not determined		17	33819721	36250180	Mouse
1301331	Lbw1_m	lupus NZB x NZW 1 (mouse)			Not determined		17	18418357	52420983	Mouse
1301840	Ssial4_m	susceptibility to sialadenitiss 4 (mouse)			Not determined		17	18175412	52178214	Mouse
1300692	Blmpf1_m	bleomycin-induced pulmonary fibrosis 1 (mouse)			Not determined		17	32061652	37644775	Mouse
1357789	Kdnw3_m	kidney weight 3 (mouse)			Not determined		17	4854752	47885665	Mouse
1301338	Lmr1_m	leishmaniasis resistance 1 (mouse)			Not determined		17	10081340	86996400	Mouse
1300703	Uvbi2_m	UVB induced immunosuppression 2 (mouse)			Not determined		17	28622406	62622654	Mouse
1301056	Pas2_m	pulmonary adenoma susceptibility 2 (mouse)			Not determined		17	18422141	52424327	Mouse
1301454	Eae5_m	susceptibility to experimental allergic encephalomyelitis 5 (mouse)			Not determined		17	24612750	58612864	Mouse
14747010	Mancz14_m	mandible centroid size 14 (mouse)					17	11998184	45998184	Mouse
1302005	Loco2_m	locomotor activity 2 (mouse)			Not determined		17	26884972	60885114	Mouse
4141272	Tfv1_m	total food volume 1 (mouse)			Not determined			4854752	65637357	Mouse
1300602	Eye2_m	eye weight 2 (mouse)			Not determined		17	26505337	41105037	Mouse
25394538	Skmw84_m	skeletal muscle weight 84, TA (mouse)					17	32660426	35520036	Mouse
10412276	Leci2_m	leukocyte endothelial cell interactions 2 (mouse)			Not determined		17	3348175	37348299	Mouse
1302140	Wta4_m	weight adult 4 (mouse)			Not determined		17	16819721	50819843	Mouse
1300706	Alan1_m	alloantigen response 1 (mouse)			Not determined		17	4854752	46469702	Mouse
1558886	Lgth9_m	body length 9 (mouse)			Not determined		17	15061652	49061760	Mouse
1558758	Kcal2_m	kilocalorie 2 (mouse)			Not determined		17	26401012	52911704	Mouse
4142150	Stheal11_m	soft tissue heal 11 (mouse)			Not determined		17	12286211	83361768	Mouse
11081168	Tir7_m	trypanosome infection response 7 (mouse)					17	14123372	48123496	Mouse
1300589	Myaa2_m	modifier of Yaa 2 (mouse)			Not determined		17	30132555	64132666	Mouse

Bat4

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	17	35,123,256 - 35,124,395	UniSTS	GRCm38
MGSCv37	17	35,260,201 - 35,261,340	UniSTS	GRCm37
Celera	17	38,220,205 - 38,221,344	UniSTS
Cytogenetic Map	17	B1	UniSTS
cM Map	17	19.02	UniSTS

G5b-pending

Mouse Assembly	Chr	Position (strand)	Source
Cytogenetic Map	17	B1	UniSTS
cM Map	17	19.02	UniSTS
cM Map	17	18.59	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	NM_001128597	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001410200	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001410201	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001410202	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001410203	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001410204	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_032460	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006525182	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006525184	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_030250157	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB221568	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF109719	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK009290	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK028189	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC057902	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC120637	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC120639	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY606764	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466666	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CJ069410	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CR974444	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU406961	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU466548	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000052167 ⟹ ENSMUSP00000056646

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	35,341,928 - 35,343,782 (+)	Ensembl
GRCm38.p6 Ensembl	17	35,122,952 - 35,124,806 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000165306 ⟹ ENSMUSP00000133240

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	35,340,459 - 35,343,790 (+)	Ensembl
GRCm38.p6 Ensembl	17	35,121,483 - 35,124,814 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000173043 ⟹ ENSMUSP00000135684

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	35,340,458 - 35,342,635 (+)	Ensembl
GRCm38.p6 Ensembl	17	35,121,482 - 35,123,659 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000173380 ⟹ ENSMUSP00000134694

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	35,340,431 - 35,342,277 (+)	Ensembl
GRCm38.p6 Ensembl	17	35,121,455 - 35,123,301 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000177018

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	35,340,637 - 35,341,319 (+)	Ensembl
GRCm38.p6 Ensembl	17	35,121,661 - 35,122,343 (+)	Ensembl

RefSeq Acc Id:

NM_001128597 ⟹ NP_001122069

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	17	35,340,499 - 35,343,791 (+)	NCBI
GRCm38	17	35,121,496 - 35,124,815 (+)	NCBI
MGSCv37	17	35,258,441 - 35,261,760 (+)	RGD
Celera	17	38,218,446 - 38,221,764 (+)	RGD
cM Map	17		ENTREZGENE

Sequence:

show sequence

TTCCCGACCAGGAAGCCTGGGAAATATAGTCTTGTTAGGCTCGCTAAGCTGCCGGGTAGGTCCTCGGGCTGATTGTCATCCCTGCGGTGCTCCCTCAGCGTTCCGCTTTGCTTTTTTTTCTCCCTCTT
CCCTGTGCCAGGCCAACCCACGGGATCCTGGTTCTCTCGCCAGGCCCGCGACAGAGTGCGCTCGGGCTCCGGCATGCGCAGAGTTGTGGTGAGGGACTTAGGTCGGGTGTGCTTGGGATGCGCTGAGC
TGTGCACGCTGCGTGAGAACCTGGACCGCCCTGCGAGCTAACCTGAGGCATGTCTAGGCCATCCTTCATCGAATTTACCCCAGCGGCTGACTCCAGTGACCTCTGGAAGGATGGGCAGCAGCAACCAC
AGCAGGAGAAAGCAGAGCCTGTCCTGGACGGGGCTGCTGCCCGGGCTTTCTATGAGGCTCTAATCGCAGATGACAGTAGTTCCTCTAAGCCCCAGAGAGCTGAACCTATGAGGGAGAGGAAGAAGAAG
AGAAGAAGAGTGACTAGGGAGCCTGCAGCAGCAGGAGTCCCCAGACAAGGAAGAGCACTTGAGGATGAAGACAGGATGGCCCAGTGGATCCTGCTGGCAGCCCAGAATGGGGATCTGACAGAACTCCG
GAGGCTGCTAGAACCCCAAGAGGCAGGGGGAGCTGGAGGGAATATCAATGCTCGTGATGCCTTCTGGTGGACTCCCTTGATGTGTGCTGCCCGAGCAGGCCAGGGCGCCGCTGTGCGCTATCTCCTGG
GCCGAGGAGCTGCCTGGGTTGGAGTCTGTGACCTGGGAGGCAGAGATGCTGCCCAGCTGGCTGAAGAAGCAGGCTTCCCTGAGGTAGCCCGTATGGTCAGAGAGAGTCATGGAGAGACAAGGAGCCCT
GAGAACCAGAACCGATCTACCCCCTCCTCGTCCCAGTTCTGTGAGGACTGTGGTGCCCACTTTGAAGACTCCAACCACCACACATCTACTGCTCACCTGCTGTCACTGTCCAGGAGACCCCAGCCCTC
CAACCTTCCCCTTGGGGTGCCCACTTCCAGTCCTGGCTTCAGGCTACTGCTGAGAGGTGGCTGGGAACCAGGAATGGGGCTAGGACCCCGGGGTGAAGGCCGTGCCAACCCTATCCCCACTATCCTCA
AGAGGGACCAGGAAGGATTGGGTTATAGATCCCCACCCCAACCCCGAGTCACACACTTTGCAGCGCGGGATACCCGGGCTGTGTCTGGGAGAGAGAGAGTCCCTCGAGTTGCCACACTGAGTCAGAGG
GAGAACAGAAGGCAAGAAGAAAAGGGCAGAGCCTGGGAGCGAGATCTAAGACTGTACATGAACCTCGAGTTCTGACTGATATGGACTGGCCCTGGTCTGTCACTCGCTGGACTTGGGCCTCTGACTTG
GACACTTGGACTTCCGAACCCTTAGGCCTTAGCTGTTGGGCTCTGATTTTAGAGAGAAGGGCGGAGAGTTGGGAGATAAATAAACTTCCTTCCTTGTG

hide sequence

RefSeq Acc Id:

NM_001410200 ⟹ NP_001397129

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	17	35,340,499 - 35,343,791 (+)	NCBI

RefSeq Acc Id:

NM_001410201 ⟹ NP_001397130

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	17	35,340,499 - 35,343,791 (+)	NCBI

RefSeq Acc Id:

NM_001410202 ⟹ NP_001397131

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	17	35,340,499 - 35,343,791 (+)	NCBI

RefSeq Acc Id:

NM_001410203 ⟹ NP_001397132

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	17	35,340,499 - 35,343,791 (+)	NCBI

RefSeq Acc Id:

NM_001410204 ⟹ NP_001397133

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	17	35,340,499 - 35,343,791 (+)	NCBI

RefSeq Acc Id:

NM_032460 ⟹ NP_115849

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	17	35,341,928 - 35,343,791 (+)	NCBI
GRCm38	17	35,122,952 - 35,124,815 (+)	NCBI
MGSCv37	17	35,258,441 - 35,261,760 (+)	RGD
Celera	17	38,218,446 - 38,221,764 (+)	RGD
cM Map	17		ENTREZGENE

Sequence:

show sequence

GGTGGTGCTGGTCATCTTCACAATAGCTACCTGAATGGTTGGATCGCTTGCTTGTCACATCCTTGCCTTGCCCAGTCTTCATTTTCTTGTTTCTCTCACAGGCATGTCTAGGCCATCCTTCATCGAAT
TTACCCCAGCGGCTGACTCCAGTGACCTCTGGAAGGATGGGCAGCAGCAACCACAGCAGGAGAAAGCAGAGCCTGTCCTGGACGGGGCTGCTGCCCGGGCTTTCTATGAGGCTCTAATCGCAGATGAC
AGTAGTTCCTCTAAGCCCCAGAGAGCTGAACCTATGAGGGAGAGGAAGAAGAAGAGAAGAAGAGTGACTAGGGAGCCTGCAGCAGCAGGAGTCCCCAGACAAGGAAGAGCACTTGAGGATGAAGACAG
GATGGCCCAGTGGATCCTGCTGGCAGCCCAGAATGGGGATCTGACAGAACTCCGGAGGCTGCTAGAACCCCAAGAGGCAGGGGGAGCTGGAGGGAATATCAATGCTCGTGATGCCTTCTGGTGGACTC
CCTTGATGTGTGCTGCCCGAGCAGGCCAGGGCGCCGCTGTGCGCTATCTCCTGGGCCGAGGAGCTGCCTGGGTTGGAGTCTGTGACCTGGGAGGCAGAGATGCTGCCCAGCTGGCTGAAGAAGCAGGC
TTCCCTGAGGTAGCCCGTATGGTCAGAGAGAGTCATGGAGAGACAAGGAGCCCTGAGAACCAGAACCGATCTACCCCCTCCTCGTCCCAGTTCTGTGAGGACTGTGGTGCCCACTTTGAAGACTCCAA
CCACCACACATCTACTGCTCACCTGCTGTCACTGTCCAGGAGACCCCAGCCCTCCAACCTTCCCCTTGGGGTGCCCACTTCCAGTCCTGGCTTCAGGCTACTGCTGAGAGGTGGCTGGGAACCAGGAA
TGGGGCTAGGACCCCGGGGTGAAGGCCGTGCCAACCCTATCCCCACTATCCTCAAGAGGGACCAGGAAGGATTGGGTTATAGATCCCCACCCCAACCCCGAGTCACACACTTTGCAGCGCGGGATACC
CGGGCTGTGTCTGGGAGAGAGAGAGTCCCTCGAGTTGCCACACTGAGTCAGAGGGAGAACAGAAGGCAAGAAGAAAAGGGCAGAGCCTGGGAGCGAGATCTAAGACTGTACATGAACCTCGAGTTCTG
ACTGATATGGACTGGCCCTGGTCTGTCACTCGCTGGACTTGGGCCTCTGACTTGGACACTTGGACTTCCGAACCCTTAGGCCTTAGCTGTTGGGCTCTGATTTTAGAGAGAAGGGCGGAGAGTTGGGA
GATAAATAAACTTCCTTCCTTGTG

hide sequence

RefSeq Acc Id:

XM_006525182 ⟹ XP_006525245

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	17	35,340,472 - 35,343,791 (+)	NCBI
GRCm38	17	35,121,488 - 35,124,815 (+)	NCBI

Sequence:

show sequence

TTCCCGACCAGGAAGCCTGGGAAATATAGTCTTGTTAGGCTCGCTAAGCTGCCGGGTAGGTCCT
CGGGCTGATTGTCATCCCTGCGGTGCTCCCTCAGCGTTCCGCTTTGCTTTTTTTTCTCCCTCTTCCCTGTGCCAGGCCAACCCACGGGATCCTGGTTCTCTCGCCAGGCCCGCGACAGAGTGCGCTCG
GGCTCCGGCATGCGCAGAGTTGTGGTGAGGGACTTAGGTCGGGTGTGCTTGGGATGCGCTGAGCTGTGCACGCTGCGTGAGAACCTGGACCGCCCTGCGAGCTAACCTGAGATTACAAGAGCGACATT
TTGCGGTACAGAAGTGACAATGCAGCTTCCCCAGAAACCTCCCGGAGTAATGTCATGCCTGTTTTTAATCTGGGAAAAGGGGACCCCTAGATAAGATCGAGCAAGATTTAAAAGGTCGACCTGTGCGG
GCCAGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAAGCTGGCAGATTTCTGAGATCGAGGCCAGTCTGGTCTACAGAGCATGTCTAGGCCATCCTTCATCGAATTTACCCCAGCGGCT
GACTCCAGTGACCTCTGGAAGGATGGGCAGCAGCAACCACAGCAGGAGAAAGCAGAGCCTGTCCTGGACGGGGCTGCTGCCCGGGCTTTCTATGAGGCTCTAATCGCAGATGACAGTAGTTCCTCTAA
GCCCCAGAGAGCTGAACCTATGAGGGAGAGGAAGAAGAAGAGAAGAAGAGTGACTAGGGAGCCTGCAGCAGCAGGAGTCCCCAGACAAGGAAGAGCACTTGAGGATGAAGACAGGATGGCCCAGTGGA
TCCTGCTGGCAGCCCAGAATGGGGATCTGACAGAACTCCGGAGGCTGCTAGAACCCCAAGAGGCAGGGGGAGCTGGAGGGAATATCAATGCTCGTGATGCCTTCTGGTGGACTCCCTTGATGTGTGCT
GCCCGAGCAGGCCAGGGCGCCGCTGTGCGCTATCTCCTGGGCCGAGGAGCTGCCTGGGTTGGAGTCTGTGACCTGGGAGGCAGAGATGCTGCCCAGCTGGCTGAAGAAGCAGGCTTCCCTGAGGTAGC
CCGTATGGTCAGAGAGAGTCATGGAGAGACAAGGAGCCCTGAGAACCAGAACCGATCTACCCCCTCCTCGTCCCAGTTCTGTGAGGACTGTGGTGCCCACTTTGAAGACTCCAACCACCACACATCTA
CTGCTCACCTGCTGTCACTGTCCAGGAGACCCCAGCCCTCCAACCTTCCCCTTGGGGTGCCCACTTCCAGTCCTGGCTTCAGGCTACTGCTGAGAGGTGGCTGGGAACCAGGAATGGGGCTAGGACCC
CGGGGTGAAGGCCGTGCCAACCCTATCCCCACTATCCTCAAGAGGGACCAGGAAGGATTGGGTTATAGATCCCCACCCCAACCCCGAGTCACACACTTTGCAGCGCGGGATACCCGGGCTGTGTCTGG
GAGAGAGAGAGTCCCTCGAGTTGCCACACTGAGTCAGAGGGAGAACAGAAGGCAAGAAGAAAAGGGCAGAGCCTGGGAGCGAGATCTAAGACTGTACATGAACCTCGAGTTCTGACTGATATGGACTG
GCCCTGGTCTGTCACTCGCTGGACTTGGGCCTCTGACTTGGACACTTGGACTTCCGAACCCTTAGGCCTTAGCTGTTGGGCTCTGATTTTAGAGAGAAGGGCGGAGAGTTGGGAGATAAATAAACTTC
CTTCCTTGTG

hide sequence

RefSeq Acc Id:

XM_006525184 ⟹ XP_006525247

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	17	35,341,699 - 35,343,791 (+)	NCBI
GRCm38	17	35,122,723 - 35,124,815 (+)	NCBI

Sequence:

show sequence

CAGATTCATATCTACTATGCCCTCATGAAATTTTATTAACATCATGACAGGATCTGTTGTTCCT
GGGGCATGTCTAGGCCATCCTTCATCGAATTTACCCCAGCGGCTGACTCCAGTGACCTCTGGAAGGATGGGCAGCAGCAACCACAGCAGGAGAAAGCAGAGCCTGTCCTGGACGGGGCTGCTGCCCGG
GCTTTCTATGAGGCTCTAATCGCAGATGACAGTAGTTCCTCTAAGCCCCAGAGAGCTGAACCTATGAGGGAGAGGAAGAAGAAGAGAAGAAGAGTGACTAGGGAGCCTGCAGCAGCAGGAGTCCCCAG
ACAAGGAAGAGCACTTGAGGATGAAGACAGGATGGCCCAGTGGATCCTGCTGGCAGCCCAGAATGGGGATCTGACAGAACTCCGGAGGCTGCTAGAACCCCAAGAGGCAGGGGGAGCTGGAGGGAATA
TCAATGCTCGTGATGCCTTCTGGTGGACTCCCTTGATGTGTGCTGCCCGAGCAGGCCAGGGCGCCGCTGTGCGCTATCTCCTGGGCCGAGGAGCTGCCTGGGTTGGAGTCTGTGACCTGGGAGGCAGA
GATGCTGCCCAGCTGGCTGAAGAAGCAGGCTTCCCTGAGGTAGCCCGTATGGTCAGAGAGAGTCATGGAGAGACAAGGAGCCCTGAGAACCAGAACCGATCTACCCCCTCCTCGTCCCAGTTCTGTGA
GGACTGTGGTGCCCACTTTGAAGACTCCAACCACCACACATCTACTGCTCACCTGCTGTCACTGTCCAGGAGACCCCAGCCCTCCAACCTTCCCCTTGGGGTGCCCACTTCCAGTCCTGGCTTCAGGC
TACTGCTGAGAGGTGGCTGGGAACCAGGAATGGGGCTAGGACCCCGGGGTGAAGGCCGTGCCAACCCTATCCCCACTATCCTCAAGAGGGACCAGGAAGGATTGGGTTATAGATCCCCACCCCAACCC
CGAGTCACACACTTTGCAGCGCGGGATACCCGGGCTGTGTCTGGGAGAGAGAGAGTCCCTCGAGTTGCCACACTGAGTCAGAGGGAGAACAGAAGGCAAGAAGAAAAGGGCAGAGCCTGGGAGCGAGA
TCTAAGACTGTACATGAACCTCGAGTTCTGACTGATATGGACTGGCCCTGGTCTGTCACTCGCTGGACTTGGGCCTCTGACTTGGACACTTGGACTTCCGAACCCTTAGGCCTTAGCTGTTGGGCTCT
GATTTTAGAGAGAAGGGCGGAGAGTTGGGAGATAAATAAACTTCCTTCCTTGTG

hide sequence

RefSeq Acc Id:

XM_030250157 ⟹ XP_030106017

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	17	35,340,685 - 35,343,791 (+)	NCBI
GRCm38	17	35,121,709 - 35,124,815 (+)	NCBI

Sequence:

show sequence

GTGGTGAGGGACTTAGGTCGGGTGTGCTTGGGATGCGCTGAGCTGTGCACGCTGCGTGAGAACC
TGGACCGCCCTGCGAGCTAACCTGAGATTACAAGAGCGACATTTTGCGGTACAGAAGTGACAATGCAGCTTCCCCAGAAACCTCCCGGAGTAATGTCATGCCTGTTTTTAATCTGGGAAAAGGGGACC
CCTAGATAAGATCGAGCAAGATTTAAAAGGTCGACCTGTGCGGGCCAGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAAGCTGGCAGATTTCTGAGATCGAGGCCAGTCTGGTCTACA
GAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAAAAAAGGGGGGGGGGTGTCGACCTTATATTTCCTGTATGTGTTAGCGGAATGTTTTCAGAGAGAGCCTGGCATTTTT
GTTTGTAGGAAGATGGGAGTTGAATACAGAACCCATTAACAACTGTCTTGTAGAATATTTTTTTCCTGTTACCCTTTTTCTTTTCTGTGTTATTGATAGAATCTAGAATTCTCAAATTTGAAACAAGC
ATTCTACACAGATTCATATCTACTATGCCCTCATGAAATTTTATTAACATCATGACAGGATCTGTTGTTCCTGGGGTCTGTTTTACCCATCCCATCGTGACAGGATCTGTTGTTATTCCTGGGGTCCC
TTTTACCCATGAGGCCCGGGCTCCACAGAATCCTAACTATGAAGTCAGTTTTGGGATGGGAGGCCCATTTTAGTTCTAGGCTGCTTTCCCATCTCAGCGGGCCCCCAGAGGTGGTGCTGGTCATCTTC
ACAATAGCTACCTGAATGGTTGGATCGCTTGCTTGTCACATCCTTGCCTTGCCCAGTCTTCATTTTCTTGTTTCTCTCACAGGCATGTCTAGGCCATCCTTCATCGAATTTACCCCAGCGGCTGACTC
CAGTGACCTCTGGAAGGATGGGCAGCAGCAACCACAGCAGGAGAAAGCAGAGCCTGTCCTGGACGGGGCTGCTGCCCGGGCTTTCTATGAGGCTCTAATCGCAGATGACAGTAGTTCCTCTAAGCCCC
AGAGAGCTGAACCTATGAGGGAGAGGAAGAAGAAGAGAAGAAGAGTGACTAGGGAGCCTGCAGCAGCAGGAGTCCCCAGACAAGGAAGAGCACTTGAGGATGAAGACAGGATGGCCCAGTGGATCCTG
CTGGCAGCCCAGAATGGGGATCTGACAGAACTCCGGAGGCTGCTAGAACCCCAAGAGGCAGGGGGAGCTGGAGGGAATATCAATGCTCGTGATGCCTTCTGGTGGACTCCCTTGATGTGTGCTGCCCG
AGCAGGCCAGGGCGCCGCTGTGCGCTATCTCCTGGGCCGAGGAGCTGCCTGGGTTGGAGTCTGTGACCTGGGAGGCAGAGATGCTGCCCAGCTGGCTGAAGAAGCAGGCTTCCCTGAGGTAGCCCGTA
TGGTCAGAGAGAGTCATGGAGAGACAAGGAGCCCTGAGAACCAGAACCGATCTACCCCCTCCTCGTCCCAGTTCTGTGAGGACTGTGGTGCCCACTTTGAAGACTCCAACCACCACACATCTACTGCT
CACCTGCTGTCACTGTCCAGGAGACCCCAGCCCTCCAACCTTCCCCTTGGGGTGCCCACTTCCAGTCCTGGCTTCAGGCTACTGCTGAGAGGTGGCTGGGAACCAGGAATGGGGCTAGGACCCCGGGG
TGAAGGCCGTGCCAACCCTATCCCCACTATCCTCAAGAGGGACCAGGAAGGATTGGGTTATAGATCCCCACCCCAACCCCGAGTCACACACTTTGCAGCGCGGGATACCCGGGCTGTGTCTGGGAGAG
AGAGAGTCCCTCGAGTTGCCACACTGAGTCAGAGGGAGAACAGAAGGCAAGAAGAAAAGGGCAGAGCCTGGGAGCGAGATCTAAGACTGTACATGAACCTCGAGTTCTGACTGATATGGACTGGCCCT
GGTCTGTCACTCGCTGGACTTGGGCCTCTGACTTGGACACTTGGACTTCCGAACCCTTAGGCCTTAGCTGTTGGGCTCTGATTTTAGAGAGAAGGGCGGAGAGTTGGGAGATAAATAAACTTCCTTCC
TTGTG

hide sequence


Protein RefSeqs	NP_001122069	(Get FASTA)	NCBI Sequence Viewer
	NP_001397129	(Get FASTA)	NCBI Sequence Viewer
	NP_001397130	(Get FASTA)	NCBI Sequence Viewer
	NP_001397131	(Get FASTA)	NCBI Sequence Viewer
	NP_001397132	(Get FASTA)	NCBI Sequence Viewer
	NP_001397133	(Get FASTA)	NCBI Sequence Viewer
	NP_115849	(Get FASTA)	NCBI Sequence Viewer
	XP_006525245	(Get FASTA)	NCBI Sequence Viewer
	XP_006525247	(Get FASTA)	NCBI Sequence Viewer
	XP_030106017	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAC82476	(Get FASTA)	NCBI Sequence Viewer
	AAH57902	(Get FASTA)	NCBI Sequence Viewer
	AAI20638	(Get FASTA)	NCBI Sequence Viewer
	AAI20640	(Get FASTA)	NCBI Sequence Viewer
	BAC25800	(Get FASTA)	NCBI Sequence Viewer
	EDL26654	(Get FASTA)	NCBI Sequence Viewer
	EDL26655	(Get FASTA)	NCBI Sequence Viewer
	EDL26656	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000056646
	ENSMUSP00000056646.9
	ENSMUSP00000133240
GenBank Protein	Q61858	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_115849 ⟸ NM_032460
- Peptide Label:	isoform 1
- UniProtKB:	Q0VBG8 (UniProtKB/Swiss-Prot), Q9R065 (UniProtKB/Swiss-Prot), Q61858 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MVGSLACHILALPSLHFLVSLTGMSRPSFIEFTPAADSSDLWKDGQQQPQQEKAEPVLDGAAARAFYEALIADDSSSSKPQRAEPMRERKKKRRRVTREPAAAGVPRQGRALEDEDRMAQWILLAAQN GDLTELRRLLEPQEAGGAGGNINARDAFWWTPLMCAARAGQGAAVRYLLGRGAAWVGVCDLGGRDAAQLAEEAGFPEVARMVRESHGETRSPENQNRSTPSSSQFCEDCGAHFEDSNHHTSTAHLLSL SRRPQPSNLPLGVPTSSPGFRLLLRGGWEPGMGLGPRGEGRANPIPTILKRDQEGLGYRSPPQPRVTHFAARDTRAVSGRERVPRVATLSQRENRRQEEKGRAWERDLRLYMNLEF hide sequence

RefSeq Acc Id:	NP_001122069 ⟸ NM_001128597
- Peptide Label:	isoform 2
- UniProtKB:	Q6PES3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSRPSFIEFTPAADSSDLWKDGQQQPQQEKAEPVLDGAAARAFYEALIADDSSSSKPQRAEPMRERKKKRRRVTREPAAAGVPRQGRALEDEDRMAQWILLAAQNGDLTELRRLLEPQEAGGAGGNIN ARDAFWWTPLMCAARAGQGAAVRYLLGRGAAWVGVCDLGGRDAAQLAEEAGFPEVARMVRESHGETRSPENQNRSTPSSSQFCEDCGAHFEDSNHHTSTAHLLSLSRRPQPSNLPLGVPTSSPGFRLL LRGGWEPGMGLGPRGEGRANPIPTILKRDQEGLGYRSPPQPRVTHFAARDTRAVSGRERVPRVATLSQRENRRQEEKGRAWERDLRLYMNLEF hide sequence

RefSeq Acc Id:	XP_006525245 ⟸ XM_006525182
- Peptide Label:	isoform X2
- UniProtKB:	Q6PES3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSRPSFIEFTPAADSSDLWKDGQQQPQQEKAEPVLDGAAARAFYEALIADDSSSSKPQRAEPMRERKKKRRRVTREPAAAGVPRQGRALEDEDRMAQWILLAAQNGDLTELRRLLEPQEAGGAGGNIN ARDAFWWTPLMCAARAGQGAAVRYLLGRGAAWVGVCDLGGRDAAQLAEEAGFPEVARMVRESHGETRSPENQNRSTPSSSQFCEDCGAHFEDSNHHTSTAHLLSLSRRPQPSNLPLGVPTSSPGFRLL LRGGWEPGMGLGPRGEGRANPIPTILKRDQEGLGYRSPPQPRVTHFAARDTRAVSGRERVPRVATLSQRENRRQEEKGRAWERDLRLYMNLEF hide sequence

RefSeq Acc Id:	XP_006525247 ⟸ XM_006525184
- Peptide Label:	isoform X2
- UniProtKB:	Q6PES3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSRPSFIEFTPAADSSDLWKDGQQQPQQEKAEPVLDGAAARAFYEALIADDSSSSKPQRAEPMRERKKKRRRVTREPAAAGVPRQGRALEDEDRMAQWILLAAQNGDLTELRRLLEPQEAGGAGGNIN ARDAFWWTPLMCAARAGQGAAVRYLLGRGAAWVGVCDLGGRDAAQLAEEAGFPEVARMVRESHGETRSPENQNRSTPSSSQFCEDCGAHFEDSNHHTSTAHLLSLSRRPQPSNLPLGVPTSSPGFRLL LRGGWEPGMGLGPRGEGRANPIPTILKRDQEGLGYRSPPQPRVTHFAARDTRAVSGRERVPRVATLSQRENRRQEEKGRAWERDLRLYMNLEF hide sequence

RefSeq Acc Id:	XP_030106017 ⟸ XM_030250157
- Peptide Label:	isoform X1
- UniProtKB:	Q61858 (UniProtKB/Swiss-Prot), Q0VBG8 (UniProtKB/Swiss-Prot), Q9R065 (UniProtKB/Swiss-Prot)

Protein Domains

G-patch

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q61858-F1-model_v2	AlphaFold	Q61858	1-372	view protein structure

RGD ID:

13675816

Promoter ID:

EPDNEW_M22057

Type:

initiation region

Name:

Gpank1_1

Description:

Mus musculus G patch domain and ankyrin repeats 1 , transcriptvariant 1, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	17	35,121,523 - 35,121,583	EPDNEW

RGD ID:

6827957

Promoter ID:

MM_KWN:23273

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

NM_001128597, NM_009975, UC008CFU.1, UC008CFW.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	17	35,258,086 - 35,258,762 (-)	MPROMDB

RGD ID:

6827866

Promoter ID:

MM_KWN:23274

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

MEF_B4

Transcripts:

NM_032460

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	17	35,258,731 - 35,259,231 (+)	MPROMDB

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000024389
	ENSMUSG00000092417	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000052167	ENTREZGENE
	ENSMUST00000052167.9	UniProtKB/Swiss-Prot
	ENSMUST00000165306	ENTREZGENE
Gene3D-CATH	1.25.40.20	UniProtKB/Swiss-Prot
InterPro	Ankyrin_rpt	UniProtKB/Swiss-Prot
	Ankyrin_rpt-contain_sf	UniProtKB/Swiss-Prot
	G_patch_dom	UniProtKB/Swiss-Prot
	GPANK1	UniProtKB/Swiss-Prot
KEGG Report	mmu:81845	UniProtKB/Swiss-Prot
MGD	MGI:2148975	ENTREZGENE
NCBI Gene	81845	ENTREZGENE
PANTHER	G PATCH DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN 1	UniProtKB/Swiss-Prot
	PTHR20923	UniProtKB/Swiss-Prot
Pfam	Ank_2	UniProtKB/Swiss-Prot
	G-patch	UniProtKB/Swiss-Prot
PhenoGen	Gpank1	PhenoGen
PROSITE	ANK_REP_REGION	UniProtKB/Swiss-Prot
	G_PATCH	UniProtKB/Swiss-Prot
SMART	G_patch	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF48403	UniProtKB/Swiss-Prot
UniProt	G3UZZ1_MOUSE	UniProtKB/TrEMBL
	GPAN1_MOUSE	UniProtKB/Swiss-Prot
	H3BL77_MOUSE	UniProtKB/TrEMBL
	Q0VBG8	ENTREZGENE
	Q61858	ENTREZGENE
	Q6PES3	ENTREZGENE, UniProtKB/TrEMBL
	Q8HWA0_MOUSE	UniProtKB/TrEMBL
	Q9R065	ENTREZGENE
UniProt Secondary	Q0VBG8	UniProtKB/Swiss-Prot
	Q9R065	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-07-27	Gpank1	G patch domain and ankyrin repeats 1	Bat4	HLA-B associated transcript 4	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar

Mammalian Phenotype