Dnd1 (DND microRNA-mediated repression inhibitor 1) - Rat Genome Database

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Gene: Dnd1 (DND microRNA-mediated repression inhibitor 1) Mus musculus
Analyze
Symbol: Dnd1
Name: DND microRNA-mediated repression inhibitor 1
RGD ID: 1321749
MGI Page MGI
Description: Predicted to enable mRNA 3'-UTR binding activity. Acts upstream of or within germ cell development. Located in cytoplasm. Is expressed in several structures, including allantois; central nervous system; gonad; head mesenchyme; and sensory organ. Orthologous to human DND1 (DND microRNA-mediated repression inhibitor 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: BC034897; dead end homolog 1; dead end protein homolog 1; MGC41452; RBM; RBMS4; RNA-binding motif, single-stranded-interacting protein 4; Te; Ter; teratoma
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Dnd1-ps  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391836,896,724 - 36,899,267 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1836,896,724 - 36,899,267 (-)EnsemblGRCm39 Ensembl
GRCm381836,763,671 - 36,766,214 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1836,763,671 - 36,766,214 (-)EnsemblGRCm38mm10GRCm38
MGSCv371836,923,325 - 36,925,868 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361836,889,645 - 36,892,188 (-)NCBIMGSCv36mm8
Celera1837,215,735 - 37,218,278 (-)NCBICelera
Cytogenetic Map18B2NCBI
cM Map1819.46NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,IDA,ISO,ISS)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,ISO,ISS)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. The ter mutation in the rat Dnd1 gene initiates gonadal teratomas and infertility in both genders. Northrup E, etal., PLoS One. 2012;7(5):e38001. doi: 10.1371/journal.pone.0038001. Epub 2012 May 24.
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
6. The Ter mutation in the dead end gene causes germ cell loss and testicular germ cell tumours. Youngren KK, etal., Nature 2005 May 19;435(7040):360-4.
Additional References at PubMed
PMID:3860691   PMID:3971387   PMID:4692863   PMID:8043946   PMID:8054975   PMID:9524576   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11599050   PMID:12466851  
PMID:12752260   PMID:12932328   PMID:14610273   PMID:15489334   PMID:16033648   PMID:16082220   PMID:16141072   PMID:16141073   PMID:16578442   PMID:17291453   PMID:17464447   PMID:17616517  
PMID:17905939   PMID:18049836   PMID:18509452   PMID:19351821   PMID:19389346   PMID:19776388   PMID:20736371   PMID:21115610   PMID:21873635   PMID:22923694   PMID:23773267   PMID:23890083  
PMID:25142465   PMID:26224005   PMID:26589352   PMID:28297718   PMID:28978771   PMID:29141221   PMID:29378702   PMID:30275529   PMID:30439356   PMID:30529251   PMID:31253634   PMID:32294451  
PMID:32339196   PMID:33199444   PMID:33394034   PMID:33568756   PMID:34706238   PMID:35705038   PMID:36807972   PMID:36857387   PMID:36922518   PMID:37076592   PMID:37127675   PMID:37180974  
PMID:38355793  


Genomics

Comparative Map Data
Dnd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391836,896,724 - 36,899,267 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1836,896,724 - 36,899,267 (-)EnsemblGRCm39 Ensembl
GRCm381836,763,671 - 36,766,214 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1836,763,671 - 36,766,214 (-)EnsemblGRCm38mm10GRCm38
MGSCv371836,923,325 - 36,925,868 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361836,889,645 - 36,892,188 (-)NCBIMGSCv36mm8
Celera1837,215,735 - 37,218,278 (-)NCBICelera
Cytogenetic Map18B2NCBI
cM Map1819.46NCBI
DND1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385140,670,794 - 140,673,576 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5140,670,794 - 140,673,576 (-)EnsemblGRCh38hg38GRCh38
GRCh375140,050,379 - 140,053,161 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365140,030,565 - 140,033,355 (-)NCBINCBI36Build 36hg18NCBI36
Build 345140,030,565 - 140,033,355NCBI
Celera5136,127,128 - 136,129,918 (-)NCBICelera
Cytogenetic Map5q31.3NCBI
HuRef5135,195,622 - 135,198,412 (-)NCBIHuRef
CHM1_15139,483,630 - 139,486,420 (-)NCBICHM1_1
T2T-CHM13v2.05141,196,191 - 141,198,973 (-)NCBIT2T-CHM13v2.0
Dnd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81828,652,712 - 28,655,336 (-)NCBIGRCr8
mRatBN7.21828,378,692 - 28,381,316 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1828,378,692 - 28,381,316 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1828,505,841 - 28,508,465 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01829,267,915 - 29,270,539 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01828,603,143 - 28,605,767 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01829,608,588 - 29,611,212 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1829,608,588 - 29,611,212 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01829,312,395 - 29,315,019 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41829,464,691 - 29,467,315 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1828,099,244 - 28,101,868 (-)NCBICelera
Cytogenetic Map18p11NCBI
Dnd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541830,893 - 32,936 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541830,795 - 33,394 (+)NCBIChiLan1.0ChiLan1.0
DND1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24135,928,635 - 135,931,488 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15134,068,186 - 134,071,155 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05136,035,464 - 136,038,524 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15142,151,441 - 142,154,262 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5142,151,441 - 142,154,262 (-)Ensemblpanpan1.1panPan2
DND1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1235,825,154 - 35,827,913 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl235,825,636 - 35,827,840 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha232,864,141 - 32,867,086 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0236,280,764 - 36,283,709 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl236,281,246 - 36,283,450 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1233,333,099 - 33,336,044 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0234,200,879 - 34,203,823 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0234,953,593 - 34,956,538 (-)NCBIUU_Cfam_GSD_1.0
Dnd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213152,001,258 - 152,003,846 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365319,607,906 - 9,609,965 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365319,607,678 - 9,610,245 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DND1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2142,384,532 - 142,387,199 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12142,384,526 - 142,387,407 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22148,328,709 - 148,331,639 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DND1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12343,304,482 - 43,307,479 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2343,304,976 - 43,307,209 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603434,577,251 - 34,580,051 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dnd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474333,421,810 - 33,424,635 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474333,421,810 - 33,424,515 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Dnd1
89 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:435
Count of miRNA genes:241
Interacting mature miRNAs:272
Transcripts:ENSMUST00000061522, ENSMUST00000124038, ENSMUST00000155827
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558743Kcal1_mkilocalorie 1 (mouse)Not determined181901887453018992Mouse
1302163Bmd16_mbone mineral density 16 (mouse)Not determined182966791463668060Mouse
11532716Sluc41c_msusceptibility to lung cancer 41c (mouse)182261991456620127Mouse
11532715Sluc41b_msusceptibility to lung cancer 41b (mouse)182261991456620127Mouse
11041903Lmr27_mleishmaniasis resistance 27 (mouse)183618756745109518Mouse
11532710Sluc41a_msusceptibility to lung cancer 41a (mouse)182261991456620127Mouse
25823171Hrsq10_mhost response to SARS QTL 10, D4% weight (mouse)182724111558827077Mouse
11532709Sluc41_msusceptibility to lung cancer 41 (mouse)182095369457590708Mouse
1301400Lmr13_mleishmaniasis resistance 13 (mouse)Not determined182810938062109518Mouse
25823174Hrsq11_mhost response to SARS QTL 11, log titer (mouse)182724111558827077Mouse
1300638Im7_mimmunoregulatory 7 (mouse)Not determined181901887453018992Mouse
1558873Hrtfm7_mheart failure modifier 7 (mouse)Not determined18808696442087106Mouse
25823173Hrsq12_mhost response to SARS QTL 12, hemorrhage (mouse)182489588178339555Mouse
1300994Pvcan3_mprotection against vaginal candidiasis 3 (mouse)Not determined181619964050199776Mouse
1301570Sluc14_msusceptibility to lung cancer 14 (mouse)Not determined182261991456620127Mouse
13504732Cath6_mcarotid atherosclerosis 6 (mouse)181363712647637126Mouse
1558849W3q15_mweight 3 weeks QTL 15 (mouse)Not determined18504111961272643Mouse
12880412V125Dq12_mvitamin D active form serum level QTL 12 (mouse)183023306764233067Mouse
1301771Pcyts6_mplasmacytoma susceptibility 6 (mouse)Not determined183565863269658851Mouse
1300877Adip8_madiposity 8 (mouse)Not determined182261991456620127Mouse
4141857Mhysq5_mmale hybrid sterility QTL 5 (mouse)Not determined2813060462130739Mouse
1300685Scc5_mcolon tumor susceptibility 5 (mouse)Not determined183198848065988629Mouse
4142366Chlq10_mcirculating hormone level QTL 10 (mouse)Not determined183629102270291180Mouse
1301307Phospq1_mphospholipid QTL 1 (mouse)Not determined181813970452139859Mouse
1357690Vtbt19_mvertebral trabecular bone trait 19 (mouse)Not determined183309104367091221Mouse
4142031Moen1_mmodifier of engrailed QTL 1 (mouse)Not determined182411556058115730Mouse
12904950Smmq3_msoleus muscle mass QTL 3 (mouse)182605687560056875Mouse
25823167Hrsq5_mhost response to SARS QTL 5, D3% weight (mouse)182724111558827077Mouse
1357603Mom3_mmodifier of Min 3 (mouse)Not determined181403002367098962Mouse
13463476Hctq8_mhematocrit QTL 8 (mouse)182121758055217727Mouse
27226723Tibw9_mtibia width 9, proximal, 16 week (mouse)18320000060933072Mouse

Markers in Region
Dnd1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381836,764,283 - 36,765,286UniSTSGRCm38
MGSCv371836,923,937 - 36,924,940UniSTSGRCm37
Celera1837,216,347 - 37,217,350UniSTS
Cytogenetic Map18B2UniSTS
cM Map1820.0UniSTS
C80692  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381836,763,342 - 36,763,463UniSTSGRCm38
MGSCv371836,922,996 - 36,923,117UniSTSGRCm37
Celera1837,215,406 - 37,215,527UniSTS
Cytogenetic Map18B2UniSTS
cM Map1820.0UniSTS
Whitehead/MRC_RH18522.05UniSTS
Hars  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381836,766,933 - 36,767,297UniSTSGRCm38
MGSCv371836,926,587 - 36,926,951UniSTSGRCm37
Celera1837,219,000 - 37,219,364UniSTS
Cytogenetic Map18B2UniSTS
cM MapUN UniSTS
cM Map18 UniSTS
Dnd1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381836,763,879 - 36,764,418UniSTSGRCm38
MGSCv371836,923,533 - 36,924,072UniSTSGRCm37
Celera1837,215,943 - 37,216,482UniSTS
Cytogenetic Map18B2UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000061522   ⟹   ENSMUSP00000054412
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1836,896,726 - 36,899,251 (-)Ensembl
GRCm38.p6 Ensembl1836,763,673 - 36,766,198 (-)Ensembl
Ensembl Acc Id: ENSMUST00000124038
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1836,896,728 - 36,899,251 (-)Ensembl
GRCm38.p6 Ensembl1836,763,675 - 36,766,198 (-)Ensembl
Ensembl Acc Id: ENSMUST00000155827
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1836,896,724 - 36,899,267 (-)Ensembl
GRCm38.p6 Ensembl1836,763,671 - 36,766,214 (-)Ensembl
RefSeq Acc Id: NM_173383   ⟹   NP_775559
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391836,896,724 - 36,899,267 (-)NCBI
GRCm381836,763,671 - 36,766,214 (-)ENTREZGENE
MGSCv371836,923,325 - 36,925,868 (-)RGD
Celera1837,215,735 - 37,218,278 (-)RGD
cM Map18 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_775559 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH34897 (Get FASTA)   NCBI Sequence Viewer  
  AAQ63636 (Get FASTA)   NCBI Sequence Viewer  
  EDK97177 (Get FASTA)   NCBI Sequence Viewer  
  EDK97178 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000054412
  ENSMUSP00000054412.8
GenBank Protein Q6VY05 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_775559   ⟸   NM_173383
- UniProtKB: Q8CFK7 (UniProtKB/Swiss-Prot),   Q6VY05 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000054412   ⟸   ENSMUST00000061522
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6VY05-F1-model_v2 AlphaFold Q6VY05 1-352 view protein structure

Promoters
RGD ID:13677490
Promoter ID:EPDNEW_M22894
Type:initiation region
Name:Dnd1_1
Description:Mus musculus DND microRNA-mediated repression inhibitor 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381836,766,232 - 36,766,292EPDNEW
RGD ID:6829181
Promoter ID:MM_KWN:24989
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Lung
Transcripts:OTTMUST00000085969,   UC008EON.1,   UC008EOO.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361836,925,516 - 36,926,016 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2447763 AgrOrtholog
Ensembl Genes ENSMUSG00000044595 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000061522 ENTREZGENE
  ENSMUST00000061522.8 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot
InterPro DND1_DSRM UniProtKB/Swiss-Prot
  DND1_RRM1 UniProtKB/Swiss-Prot
  Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot
  RBD_domain_sf UniProtKB/Swiss-Prot
  RRM_dom UniProtKB/Swiss-Prot
KEGG Report mmu:213236 UniProtKB/Swiss-Prot
MGD MGI:2447763 ENTREZGENE
NCBI Gene 213236 ENTREZGENE
PANTHER DEAD END PROTEIN HOMOLOG 1 UniProtKB/Swiss-Prot
  HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN UniProtKB/Swiss-Prot
Pfam DND1_DSRM UniProtKB/Swiss-Prot
  RRM_1 UniProtKB/Swiss-Prot
PhenoGen Dnd1 PhenoGen
PROSITE RRM UniProtKB/Swiss-Prot
SMART RRM UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot
UniProt DND1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q8CFK7 ENTREZGENE
UniProt Secondary Q8CFK7 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-29 Dnd1  DND microRNA-mediated repression inhibitor 1    dead end homolog 1 (zebrafish)  Symbol and/or name change 5135510 APPROVED