DND1 (DND microRNA-mediated repression inhibitor 1) - Rat Genome Database

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Gene: DND1 (DND microRNA-mediated repression inhibitor 1) Canis lupus familiaris
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Symbol: DND1
Name: DND microRNA-mediated repression inhibitor 1
RGD ID: 12296264
Description: ENCODES a protein that exhibits miRNA binding (ortholog); INVOLVED IN germ cell development (ortholog); spermatogenesis (ortholog); ASSOCIATED WITH autosomal dominant non-syndromic intellectual disability 31 (ortholog); autosomal dominant nonsyndromic deafness 1 (ortholog); familial adenomatous polyposis 1 (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: dead end homolog 1; dead end protein homolog 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1235,825,154 - 35,827,913 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl235,825,636 - 35,827,840 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha232,864,141 - 32,867,086 (-)NCBI
ROS_Cfam_1.0236,280,764 - 36,283,709 (-)NCBI
UMICH_Zoey_3.1233,333,099 - 33,336,044 (-)NCBI
UNSW_CanFamBas_1.0234,200,879 - 34,203,823 (-)NCBI
UU_Cfam_GSD_1.0234,953,593 - 34,956,538 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,ISO)
mitochondrion  (IEA)
nucleoplasm  (IEA)
nucleus  (IBA,ISO)

Molecular Function

References

Genomics

Comparative Map Data
DND1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1235,825,154 - 35,827,913 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl235,825,636 - 35,827,840 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha232,864,141 - 32,867,086 (-)NCBI
ROS_Cfam_1.0236,280,764 - 36,283,709 (-)NCBI
UMICH_Zoey_3.1233,333,099 - 33,336,044 (-)NCBI
UNSW_CanFamBas_1.0234,200,879 - 34,203,823 (-)NCBI
UU_Cfam_GSD_1.0234,953,593 - 34,956,538 (-)NCBI
DND1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl5140,670,794 - 140,673,576 (-)EnsemblGRCh38hg38GRCh38
GRCh385140,670,794 - 140,673,576 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh375140,050,379 - 140,053,161 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365140,030,565 - 140,033,355 (-)NCBINCBI36hg18NCBI36
Build 345140,030,565 - 140,033,355NCBI
Celera5136,127,128 - 136,129,918 (-)NCBI
Cytogenetic Map5q31.3NCBI
HuRef5135,195,622 - 135,198,412 (-)NCBIHuRef
CHM1_15139,483,630 - 139,486,420 (-)NCBICHM1_1
Dnd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391836,896,724 - 36,899,267 (-)NCBIGRCm39mm39
GRCm39 Ensembl1836,896,724 - 36,899,267 (-)Ensembl
GRCm381836,763,671 - 36,766,214 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1836,763,671 - 36,766,214 (-)EnsemblGRCm38mm10GRCm38
MGSCv371836,923,325 - 36,925,868 (-)NCBIGRCm37mm9NCBIm37
MGSCv361836,889,645 - 36,892,188 (-)NCBImm8
Celera1837,215,735 - 37,218,278 (-)NCBICelera
Cytogenetic Map18B2NCBI
cM Map1819.46NCBI
Dnd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21828,378,692 - 28,381,316 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1828,378,692 - 28,381,316 (-)Ensembl
Rnor_6.01829,608,588 - 29,611,212 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1829,608,588 - 29,611,212 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01829,312,395 - 29,315,019 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41829,464,691 - 29,467,315 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1828,099,244 - 28,101,868 (-)NCBICelera
Cytogenetic Map18p11NCBI
Dnd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541830,893 - 32,936 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541830,795 - 33,394 (+)NCBIChiLan1.0ChiLan1.0
DND1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.15142,151,441 - 142,154,262 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5142,151,441 - 142,154,262 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v05136,035,464 - 136,038,524 (-)NCBIMhudiblu_PPA_v0panPan3
Dnd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213152,001,258 - 152,003,846 (+)NCBI
SpeTri2.0NW_0049365319,607,678 - 9,610,245 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DND1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2142,384,532 - 142,387,199 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12142,384,526 - 142,387,407 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22148,328,709 - 148,331,639 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DND1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12343,304,482 - 43,307,479 (-)NCBI
ChlSab1.1 Ensembl2343,304,976 - 43,307,209 (-)Ensembl
Vero_WHO_p1.0NW_02366603434,577,251 - 34,580,051 (+)NCBI
Dnd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474333,421,810 - 33,424,515 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium
Low
Below cutoff 5 5 21 5 6 5 6 6 12 8 10 6

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000009495   ⟹   ENSCAFP00000008815
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl235,825,636 - 35,827,840 (-)Ensembl
RefSeq Acc Id: XM_038458098   ⟹   XP_038314026
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha232,864,141 - 32,866,852 (-)NCBI
RefSeq Acc Id: XM_038469589   ⟹   XP_038325517
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1233,333,099 - 33,335,810 (-)NCBI
RefSeq Acc Id: XM_038469590   ⟹   XP_038325518
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1233,333,099 - 33,336,044 (-)NCBI
RefSeq Acc Id: XM_038530360   ⟹   XP_038386288
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0234,953,593 - 34,956,304 (-)NCBI
RefSeq Acc Id: XM_038530361   ⟹   XP_038386289
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0234,953,593 - 34,956,538 (-)NCBI
RefSeq Acc Id: XM_038594610   ⟹   XP_038450538
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0234,200,879 - 34,203,589 (-)NCBI
RefSeq Acc Id: XM_038594611   ⟹   XP_038450539
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0234,200,879 - 34,203,823 (-)NCBI
RefSeq Acc Id: XM_038658651   ⟹   XP_038514579
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0236,280,764 - 36,283,475 (-)NCBI
RefSeq Acc Id: XM_038658652   ⟹   XP_038514580
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0236,280,764 - 36,283,709 (-)NCBI
RefSeq Acc Id: XM_843741   ⟹   XP_848834
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1235,825,154 - 35,827,913 (-)NCBI
Dog10K_Boxer_Tasha232,864,141 - 32,867,086 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_848834   ⟸   XM_843741
- Peptide Label: isoform X2
- UniProtKB: E2R022 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000008815   ⟸   ENSCAFT00000009495
RefSeq Acc Id: XP_038325518   ⟸   XM_038469590
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038325517   ⟸   XM_038469589
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038450539   ⟸   XM_038594611
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038450538   ⟸   XM_038594610
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038514580   ⟸   XM_038658652
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038514579   ⟸   XM_038658651
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038314026   ⟸   XM_038458098
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038386289   ⟸   XM_038530361
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038386288   ⟸   XM_038530360
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000005888 Ensembl, ENTREZGENE
Ensembl Protein ENSCAFP00000008815 ENTREZGENE
NCBI Gene DND1 ENTREZGENE
UniProt E2R022 ENTREZGENE
VGNC ID VGNC:40028 ENTREZGENE