Kctd3 (potassium channel tetramerisation domain containing 3) - Rat Genome Database

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Gene: Kctd3 (potassium channel tetramerisation domain containing 3) Mus musculus
Analyze
Symbol: Kctd3
Name: potassium channel tetramerisation domain containing 3
RGD ID: 1321691
MGI Page MGI
Description: Predicted to be involved in protein homooligomerization. Located in plasma membrane. Orthologous to human KCTD3 (potassium channel tetramerization domain containing 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4930438A20Rik; 9330185B06; BTB/POZ domain-containing protein KCTD3; E330032J19Rik; NY-REN; NY-REN-45
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm7553  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391188,703,292 - 188,740,095 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1188,703,292 - 188,740,038 (-)EnsemblGRCm39 Ensembl
GRCm381188,971,095 - 189,007,898 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1188,971,095 - 189,007,841 (-)EnsemblGRCm38mm10GRCm38
MGSCv371190,794,977 - 190,831,719 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361190,671,886 - 190,708,628 (-)NCBIMGSCv36mm8
Celera1195,882,760 - 195,919,558 (-)NCBICelera
Cytogenetic Map1H6NCBI
cM Map193.51NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
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Reference
Notes
Source
Original Reference(s)
Kctd3MouseCOVID-19  ISORGD:13216909068941mRNA:increased expression:peripheral blood mononuclear cell (human)RGDPMID:32228226|REF_RGD_ID:28912744
Object Symbol
Species
Term
Qualifier
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Reference
Notes
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Original Reference(s)
Kctd3Mouseautistic disorder  ISORGD:13216908554872ClinVar Annotator: match by term: Autism | ClinVar Annotator: match by term: Autism, susceptibility to, more ...ClinVarPMID:25558065|PMID:25741868
Kctd3Mousecerebellar hypoplasia  ISORGD:13216908554872ClinVar Annotator: match by term: Congenital cerebellar hypoplasiaClinVarPMID:25558065|PMID:25741868
Kctd3Mousegastrointestinal stromal tumor  ISORGD:13216908554872ClinVar Annotator: match by term: Gastrointestinal stromal tumorClinVarPMID:28492532
Kctd3Mousegenetic disease  ISORGD:13216908554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVar 
Kctd3MouseLoeys-Dietz syndrome 4  ISORGD:13216908554872ClinVar Annotator: match by term: Loeys-Dietz syndrome 4ClinVarPMID:22772368|PMID:28544325
Kctd3Mouseparathyroid carcinoma  ISORGD:13216908554872ClinVar Annotator: match by term: Parathyroid carcinomaClinVarPMID:28492532
Kctd3MouseUsher syndrome type 2A  ISORGD:13216908554872ClinVar Annotator: match by term: Usher syndrome type 2AClinVarPMID:21681106

1 to 20 of 65 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Kctd3Mouse1,2-dimethylhydrazine multiple interactionsEXP 6480464Folic Acid inhibits the reaction [1,2-Dimethylhydrazine results in increased expression of KCTD3 mRNA]CTDPMID:22206623
Kctd3Mouse1,2-dimethylhydrazine increases expressionEXP 64804641,2-Dimethylhydrazine results in increased expression of KCTD3 mRNACTDPMID:22206623
Kctd3Mouse17alpha-ethynylestradiol increases expressionEXP 6480464Ethinyl Estradiol results in increased expression of KCTD3 mRNACTDPMID:17942748
Kctd3Mouse17alpha-ethynylestradiol multiple interactionsEXP 6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of KCTD3 mRNACTDPMID:17942748
Kctd3Mouse17beta-estradiol multiple interactionsISORGD:13106586480464[bisphenol A co-treated with Estradiol] results in decreased expression of KCTD3 mRNACTDPMID:26496021
Kctd3Mouse17beta-hydroxy-5alpha-androstan-3-one increases expressionISORGD:13216906480464Dihydrotestosterone results in increased expression of KCTD3 mRNACTDPMID:29581250
Kctd3Mouse2,3',4,4',5-Pentachlorobiphenyl increases expressionEXP 64804642,3',4,4',5-pentachlorobiphenyl results in increased expression of KCTD3 mRNACTDPMID:31388691
Kctd3Mouse2,3,7,8-tetrachlorodibenzodioxine multiple interactionsEXP 6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of KCTD3 mRNACTDPMID:17942748
Kctd3Mouse2,6-dinitrotoluene affects expressionISORGD:131065864804642,6-dinitrotoluene affects the expression of KCTD3 mRNACTDPMID:21346803
Kctd3Mouse3-methylcholanthrene multiple interactionsISORGD:13216906480464Methylcholanthrene promotes the reaction [AHR protein binds to KCTD3 promoter]CTDPMID:20348232
Kctd3Mouse4-hydroxyphenyl retinamide decreases expressionISORGD:13216906480464Fenretinide results in decreased expression of KCTD3 mRNACTDPMID:16671099
Kctd3Mouse4-hydroxyphenyl retinamide decreases expressionEXP 6480464Fenretinide results in decreased expression of KCTD3 mRNACTDPMID:28973697
Kctd3Mouse6-propyl-2-thiouracil increases expressionISORGD:13106586480464Propylthiouracil results in increased expression of KCTD3 mRNACTDPMID:30047161
Kctd3Mouseacrylamide increases expressionEXP 6480464Acrylamide results in increased expression of KCTD3 mRNACTDPMID:30807115
Kctd3Mouseaflatoxin B1 increases expressionEXP 6480464Aflatoxin B1 results in increased expression of KCTD3 mRNACTDPMID:19770486
Kctd3Mouseaflatoxin B1 decreases expressionISORGD:13216906480464Aflatoxin B1 results in decreased expression of KCTD3 mRNACTDPMID:21641981
Kctd3MouseAflatoxin B2 alpha decreases methylationISORGD:13216906480464aflatoxin B2 results in decreased methylation of KCTD3 intronCTDPMID:30157460
Kctd3Mouseamitrole increases expressionISORGD:13106586480464Amitrole results in increased expression of KCTD3 mRNACTDPMID:30047161
Kctd3Mousearistolochic acid A decreases expressionISORGD:13216906480464aristolochic acid I results in decreased expression of KCTD3 mRNACTDPMID:33212167
Kctd3Mouseatrazine affects methylationISORGD:13106586480464Atrazine affects the methylation of KCTD3 geneCTDPMID:28931070

1 to 20 of 65 rows

Biological Process

  
Object Symbol
Species
Term
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Reference
Notes
Source
Original Reference(s)
Kctd3Mousebiological_process involved_inND 2290270 MGIGO_REF:0000015
Kctd3Mouseprotein homooligomerization involved_inIEAInterPro:IPR0031312290270 InterProGO_REF:0000002

Cellular Component

  
Object Symbol
Species
Term
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Original Reference(s)
Kctd3Mouseplasma membrane located_inIDA 2290270 PMID:23382386UniProtPMID:23382386

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
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Reference
Notes
Source
Original Reference(s)
Kctd3Mousemolecular_function enablesND 2290270 MGIGO_REF:0000015
Kctd3Mouseprotein binding enablesIPIUniProtKB:O887052290270 PMID:23382386UniProtPMID:23382386

Object Symbol
Species
Term
Qualifier
Evidence
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Reference
Notes
Source
Original Reference(s)
Kctd3Mouseabnormal embryo size  IEA 5509061 MGI 
Kctd3Mouseabnormal eye morphology  IEA 5509061 MGI 
Kctd3Mousedecreased mean corpuscular hemoglobin  IEA 5509061 MGI 
Kctd3Mouseedema  IEA 5509061 MGI 
Kctd3Mouseenlarged urinary bladder  IEA 5509061 MGI 
Kctd3Mousepreweaning lethality, complete penetrance  IEA 5509061 MGI 

#
Reference Title
Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:17967808  
PMID:18799693   PMID:21677750   PMID:23382386   PMID:32581705   PMID:38355793  



Kctd3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391188,703,292 - 188,740,095 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1188,703,292 - 188,740,038 (-)EnsemblGRCm39 Ensembl
GRCm381188,971,095 - 189,007,898 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1188,971,095 - 189,007,841 (-)EnsemblGRCm38mm10GRCm38
MGSCv371190,794,977 - 190,831,719 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361190,671,886 - 190,708,628 (-)NCBIMGSCv36mm8
Celera1195,882,760 - 195,919,558 (-)NCBICelera
Cytogenetic Map1H6NCBI
cM Map193.51NCBI
KCTD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381215,567,304 - 215,621,807 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1215,567,304 - 215,621,807 (+)EnsemblGRCh38hg38GRCh38
GRCh371215,740,647 - 215,795,149 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361213,807,358 - 213,861,772 (+)NCBINCBI36Build 36hg18NCBI36
Build 341212,129,129 - 212,183,542NCBI
Celera1188,964,556 - 189,018,971 (+)NCBICelera
Cytogenetic Map1q41NCBI
HuRef1186,414,971 - 186,469,413 (+)NCBIHuRef
CHM1_11217,013,056 - 217,067,482 (+)NCBICHM1_1
T2T-CHM13v2.01214,807,705 - 214,862,209 (+)NCBIT2T-CHM13v2.0
Kctd3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr813103,041,488 - 103,080,069 (-)NCBIGRCr8
mRatBN7.213100,510,193 - 100,548,765 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl13100,510,195 - 100,548,718 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx13103,025,630 - 103,064,151 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.013104,414,429 - 104,452,952 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.013101,616,996 - 101,655,605 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.013107,433,588 - 107,471,843 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13107,433,588 - 107,471,843 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013112,063,807 - 112,101,984 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.413105,117,483 - 105,155,705 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.113105,307,551 - 105,373,106 (-)NCBI
Celera13100,000,837 - 100,039,378 (-)NCBICelera
Cytogenetic Map13q26NCBI
Kctd3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554062,501,083 - 2,540,125 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554062,500,619 - 2,539,123 (-)NCBIChiLan1.0ChiLan1.0
KCTD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2133,782,743 - 33,837,316 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1133,740,794 - 33,795,442 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01191,138,755 - 191,193,352 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11195,992,828 - 196,047,013 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1195,992,842 - 196,051,606 (+)Ensemblpanpan1.1panPan2
KCTD3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13811,016,344 - 11,059,843 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3811,008,857 - 11,084,871 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3811,042,385 - 11,097,556 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03811,030,105 - 11,085,477 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3811,030,097 - 11,085,471 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13811,042,689 - 11,098,109 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03811,395,043 - 11,450,335 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03811,680,643 - 11,736,064 (+)NCBIUU_Cfam_GSD_1.0
Kctd3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934460,852,512 - 60,902,757 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366282,862,617 - 2,912,790 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366282,862,536 - 2,912,784 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KCTD3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl105,754,156 - 5,815,086 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1105,754,180 - 5,815,126 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2107,733,711 - 7,777,690 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KCTD3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12513,951,569 - 14,008,370 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2513,950,775 - 14,008,338 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605514,398,224 - 14,454,888 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kctd3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462483511,110 - 46,480 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Kctd3
1921 total Variants

Predicted Target Of
Summary Value
Count of predictions:625
Count of miRNA genes:397
Interacting mature miRNAs:453
Transcripts:ENSMUST00000085678
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 64 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
4141245Cq2_mcholesterol QTL 2 (mouse)Not determined1157456299191456436Mouse
4141244Bmd5c_mbone mineral density 5c (mouse)Not determined155526796189526897Mouse
1558802Skmw6_mskeletal muscle weight 6 (mouse)Not determined1167954584195154279Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
1301652Cpfd2_mcerebellum pattern fissures (mouse)Not determined1172303451195154279Mouse
12790987Tgl5_mtriglyceride 5 (mouse)1160097157194097157Mouse
4142389Scfr1_mstem cell frequency regulator 1 (mouse)Not determined171632048189303617Mouse
1300888Berr1_mberghei resistance locus 1 (mouse)Not determined1164143227190534272Mouse
12790988Phdlc5_mplasma HDL cholesterol 5 (mouse)9160097157194097157Mouse

1 to 10 of 64 rows
D9Mit34.1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map2C1.3UniSTS
Cytogenetic Map19D1UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11B4UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map1C1.3UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map1E3UniSTS
Cytogenetic Map5E1UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map16B3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map19D3UniSTS
Cytogenetic Map1H5UniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map9DUniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map17DUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map13A1UniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map12A3UniSTS
Cytogenetic Map1H2.1UniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map6A2UniSTS
Cytogenetic Map7B1UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map5C3.1UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map11B1.1UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map2C2UniSTS
Cytogenetic Map19CUniSTS
Cytogenetic Map17E1.3UniSTS
Cytogenetic Map5A1UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map13A5UniSTS
Cytogenetic MapXA1.1UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map3A3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map8CUniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map1H1UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map1A2UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXC-DUniSTS
Cytogenetic Map5G1.3UniSTS
Cytogenetic Map7D1-E2UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map1H2.2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map16C1.1UniSTS
Cytogenetic Map15F2UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map1H4-H6UniSTS
Cytogenetic Map12D2UniSTS
Cytogenetic Map1G3UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map1H3UniSTS
Cytogenetic Map19BUniSTS
cM Map950.0UniSTS
Whitehead Genetic943.7UniSTS
D11Bhm20  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map19D1UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map12D1UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map4E1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map16C1.1UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map1C1.3UniSTS
Cytogenetic Map13D2UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A2UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map16C4UniSTS
Cytogenetic Map3G1UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map7B1-B2UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic Map11B1.1UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic Map10D2UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXC-DUniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map11A3.2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map19BUniSTS
cM Map1144.15UniSTS






1 to 30 of 31 rows
RefSeq Transcripts NM_001359576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001359577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001359578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_172650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_153196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001784131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001784133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001784135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003954946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_373771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC129312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK034380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK139700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC045196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC061458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC079581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 31 rows

Ensembl Acc Id: ENSMUST00000085678   ⟹   ENSMUSP00000082821
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1188,703,292 - 188,740,037 (-)Ensembl
GRCm38.p6 Ensembl1188,971,095 - 189,007,840 (-)Ensembl
Ensembl Acc Id: ENSMUST00000192200
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1188,704,448 - 188,706,819 (-)Ensembl
GRCm38.p6 Ensembl1188,972,251 - 188,974,622 (-)Ensembl
Ensembl Acc Id: ENSMUST00000192458   ⟹   ENSMUSP00000156175
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1188,705,998 - 188,708,848 (-)Ensembl
GRCm38.p6 Ensembl1188,973,801 - 188,976,651 (-)Ensembl
Ensembl Acc Id: ENSMUST00000193143   ⟹   ENSMUSP00000141861
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1188,703,292 - 188,740,025 (-)Ensembl
GRCm38.p6 Ensembl1188,971,095 - 189,007,828 (-)Ensembl
Ensembl Acc Id: ENSMUST00000193273
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1188,727,286 - 188,729,913 (-)Ensembl
GRCm38.p6 Ensembl1188,995,089 - 188,997,716 (-)Ensembl
Ensembl Acc Id: ENSMUST00000193590
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1188,710,746 - 188,714,005 (-)Ensembl
GRCm38.p6 Ensembl1188,978,549 - 188,981,808 (-)Ensembl
Ensembl Acc Id: ENSMUST00000195488
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1188,704,716 - 188,705,936 (-)Ensembl
GRCm38.p6 Ensembl1188,972,519 - 188,973,739 (-)Ensembl
Ensembl Acc Id: ENSMUST00000195658   ⟹   ENSMUSP00000141863
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1188,704,673 - 188,710,795 (-)Ensembl
GRCm38.p6 Ensembl1188,972,476 - 188,978,598 (-)Ensembl
Ensembl Acc Id: ENSMUST00000195745
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1188,704,561 - 188,706,437 (-)Ensembl
GRCm38.p6 Ensembl1188,972,364 - 188,974,240 (-)Ensembl
Ensembl Acc Id: ENSMUST00000195787
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1188,712,996 - 188,740,038 (-)Ensembl
GRCm38.p6 Ensembl1188,980,799 - 189,007,841 (-)Ensembl
RefSeq Acc Id: NM_001359576   ⟹   NP_001346505
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,703,292 - 188,740,037 (-)NCBI
GRCm381188,971,095 - 189,007,840 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001359577   ⟹   NP_001346506
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,703,292 - 188,740,037 (-)NCBI
GRCm381188,971,095 - 189,007,840 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001359578   ⟹   NP_001346507
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,703,292 - 188,740,037 (-)NCBI
GRCm381188,971,095 - 189,007,840 (-)NCBI
Sequence:
RefSeq Acc Id: NM_172650   ⟹   NP_766238
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,703,295 - 188,740,037 (-)NCBI
GRCm381188,971,098 - 189,007,840 (-)NCBI
MGSCv371190,794,977 - 190,831,719 (-)RGD
Celera1195,882,760 - 195,919,558 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_153196
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,703,292 - 188,740,037 (-)NCBI
GRCm381188,971,095 - 189,007,840 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017320175   ⟹   XP_017175664
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,703,292 - 188,729,532 (-)NCBI
GRCm381188,971,095 - 188,997,335 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017320182   ⟹   XP_017175671
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,703,292 - 188,729,532 (-)NCBI
GRCm381188,971,095 - 188,997,335 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030253563   ⟹   XP_030109423
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,703,292 - 188,740,062 (-)NCBI
GRCm381188,971,095 - 189,007,863 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036164219   ⟹   XP_036020112
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,703,292 - 188,740,052 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036164222   ⟹   XP_036020115
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,703,292 - 188,740,061 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001784131
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,703,292 - 188,740,095 (-)NCBI
GRCm381188,971,095 - 189,007,898 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001784133
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,703,292 - 188,740,095 (-)NCBI
GRCm381188,971,095 - 189,007,898 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001784135
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,703,292 - 188,740,095 (-)NCBI
GRCm381188,971,095 - 189,007,898 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003954946
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,703,292 - 188,740,095 (-)NCBI
GRCm381188,971,095 - 189,007,898 (-)NCBI
Sequence:
RefSeq Acc Id: XR_373771
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,703,292 - 188,740,095 (-)NCBI
GRCm381188,971,095 - 189,007,898 (-)NCBI
Sequence:
1 to 5 of 13 rows
1 to 5 of 13 rows
RefSeq Acc Id: NP_766238   ⟸   NM_172650
- Peptide Label: isoform 1
- UniProtKB: Q6P7X4 (UniProtKB/Swiss-Prot),   Q8BFX3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017175671   ⟸   XM_017320182
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017175664   ⟸   XM_017320175
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_030109423   ⟸   XM_030253563
- Peptide Label: isoform X3
RefSeq Acc Id: NP_001346506   ⟸   NM_001359577
- Peptide Label: isoform 3
BTB

Name Modeler Protein Id AA Range Protein Structure
AF-Q8BFX3-F1-model_v2 AlphaFold Q8BFX3 1-815 view protein structure

RGD ID:6876062
Promoter ID:EPDNEW_M1482
Type:multiple initiation site
Name:Kctd3_1
Description:Mus musculus potassium channel tetramerisation domain containing3 , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381189,007,840 - 189,007,900EPDNEW
RGD ID:6817972
Promoter ID:MM_KWN:3260
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   Spleen
Transcripts:NM_172650,   UC007EAJ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361190,831,411 - 190,831,911 (-)MPROMDB


1 to 35 of 35 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000026608 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000085678 ENTREZGENE
  ENSMUST00000085678.8 UniProtKB/Swiss-Prot
  ENSMUST00000193143 ENTREZGENE
Gene3D-CATH 2.130.10.10 UniProtKB/Swiss-Prot
  Potassium Channel Kv1.1, Chain A UniProtKB/Swiss-Prot
InterPro BTB/POZ_dom UniProtKB/Swiss-Prot
  SHKBP1/KCTD3 UniProtKB/Swiss-Prot
  SHKBP1_KCTD3_BTB_POZ UniProtKB/Swiss-Prot
  SKP1/BTB/POZ_sf UniProtKB/Swiss-Prot
  T1-type_BTB UniProtKB/Swiss-Prot
  WD40/YVTN_repeat-like_dom_sf UniProtKB/Swiss-Prot
  WD40_repeat UniProtKB/Swiss-Prot
  WD40_repeat_dom_sf UniProtKB/Swiss-Prot
KEGG Report mmu:226823 UniProtKB/Swiss-Prot
MGD MGI:2444629 ENTREZGENE
NCBI Gene 226823 ENTREZGENE
PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN KCTD3 UniProtKB/Swiss-Prot
  SETA BINDING PROTEIN 1 UniProtKB/Swiss-Prot
Pfam BTB_2 UniProtKB/Swiss-Prot
PhenoGen Kctd3 PhenoGen
PROSITE BTB UniProtKB/Swiss-Prot
  WD_REPEATS_1 UniProtKB/Swiss-Prot
SMART BTB UniProtKB/Swiss-Prot
  WD40 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF50978 UniProtKB/Swiss-Prot
  SSF54695 UniProtKB/Swiss-Prot
UniProt A0A0A6YX67_MOUSE UniProtKB/TrEMBL
  A0A0A6YX69_MOUSE UniProtKB/TrEMBL
  A0A338P7C2_MOUSE UniProtKB/TrEMBL
  KCTD3_MOUSE UniProtKB/Swiss-Prot
  Q6P7X4 ENTREZGENE
  Q80VR1_MOUSE UniProtKB/TrEMBL
  Q8BFX3 ENTREZGENE
UniProt Secondary Q6P7X4 UniProtKB/Swiss-Prot
1 to 35 of 35 rows