Bmd1c_m QTL Report (Mus musculus) - Rat Genome Database

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QTL Registration

QTL: Bmd1c_m (bone mineral density 1c (mouse)) Mus musculus

Symbol: Bmd1c_m
Name: bone mineral density 1c (mouse)
RGD ID: 4141034
Trait: Not determined
LOD Score: Not Available
P Value: Not Available
Variance: Not Available
Position
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm391185,909,790 - 189,303,617MOUSEQTLGRCm39
GRCm381186,177,593 - 189,571,420MOUSEQTLGRCm38
cM Map1syntenicMOUSEQTL
Cross Type: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Mouse Genome Database (MGD) Mouse Genome Database (MGD)
2. Mouse MP Annotation Import Pipeline RGD automated import pipeline
Additional References at PubMed
PMID:16355278  


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
329964486LOC131296890STARR-seq mESC enhancer starr_033451185967974185969842Mouse
329967830LOC131296891STARR-seq mESC enhancer starr_033461185985560185987546Mouse
329962792LOC131296892STARR-seq mESC enhancer starr_033471185993025185994402Mouse
329967820LOC131296893STARR-seq mESC enhancer starr_033491186025646186027258Mouse
329962857LOC131296894STARR-seq mESC enhancer starr_033501186094820186097013Mouse
9665914Gm35341predicted gene, 353411186140017186152709Mouse
9612903Gm35426predicted gene, 354261186196037186218657Mouse
329964756LOC131296895STARR-seq mESC enhancer starr_033521186242372186244487Mouse
1610472A730004F24RikRIKEN cDNA A730004F24 gene1186244035186290878Mouse
329967728LOC131296896STARR-seq mESC enhancer starr_033531186245279186247124Mouse
9641154Gm35546predicted gene, 355461186319519186346706Mouse
329962187LOC131296897STARR-seq mESC enhancer starr_033551186329572186330991Mouse
730954Tgfb2transforming growth factor, beta 21186354984186441504Mouse
14996221Gm26169predicted gene, 261691186408939186409073Mouse
9592515Gm35655predicted gene, 356551186433147186438803Mouse
401833987LOC132408480STARR-positive B cell enhancer ABC_E95001186445162186445462Mouse
1332363Rrp15ribosomal RNA processing 15 homolog1186453283186481555Mouse
1611727A430105J06RikRIKEN cDNA A430105J06 gene1186481586186485143Mouse
329967486LOC131296898STARR-seq mESC enhancer starr_033601186546001186548712Mouse
329969572LOC131296899STARR-seq mESC enhancer starr_033611186637107186638137Mouse
10024362Gm39732predicted gene, 397321186649365186674489Mouse
329964533LOC131296900STARR-seq mESC enhancer starr_033621186654514186655762Mouse
16118451700023G09RikRIKEN cDNA 1700023G09 gene1186657659186662444Mouse
10015397Gm39731predicted gene, 397311186673555186678173Mouse
2299682Gm3809predicted gene 38091186692688186693908Mouse
1320002D1Pas1DNA segment, Chr 1, Pasteur Institute 11186699613186702824Mouse
329969039LOC131296901STARR-seq mESC enhancer starr_033631186708638186710532Mouse
5142493Gm19058predicted gene, 190581186738207186738774Mouse
1557576Spata17spermatogenesis associated 171186741811186947705Mouse
10002485Gm15509predicted gene 155091186853066186856562Mouse
16119151700007P06RikRIKEN cDNA 1700007P06 gene1186857335186860049Mouse
329969075LOC131296902STARR-seq mESC enhancer starr_033641186859142186860671Mouse
329962935LOC131296903STARR-seq mESC enhancer starr_033651186895180186896722Mouse
1318885Gpatch2G patch domain containing 21186946855187103839Mouse
401841069LOC132408481STARR-positive B cell enhancer ABC_E25961186947360186947661Mouse
15017207Gm51737predicted gene, 517371187005574187017819Mouse
401835762LOC132408482STARR-positive B cell enhancer mm9_chr1:189146346-1891466471187054664187054965Mouse
163679453LOC128924421CapStarr-seq enhancer MGSCv37_chr1:189172430-1891726171187080748187080935Mouse
329968048LOC131296904STARR-seq mESC enhancer starr_033681187096671187098827Mouse
401833928LOC132408483STARR-positive B cell enhancer ABC_E87821187110374187110675Mouse
9999460Gm37896predicted gene, 378961187180067187194978Mouse
9592744Gm36249predicted gene, 362491187218601187224735Mouse
9603278Gm36388predicted gene, 363881187253880187323244Mouse
12797955Gm46176predicted gene, 461761187299847187337818Mouse
1551381Esrrgestrogen-related receptor gamma1187340707187947082Mouse
39129513Gm53517predicted gene, 535171187350954187359921Mouse
329965126LOC131296905STARR-seq mESC enhancer starr_033711187455215187457797Mouse
39129460LOC110120365VISTA enhancer mm1111187639726187641253Mouse
329968853LOC131296906STARR-seq mESC enhancer starr_033731187647035187649531Mouse
16115189330162B11RikRIKEN cDNA 9330162B11 gene1187738773187741187Mouse
329964284LOC131296907STARR-seq mESC enhancer starr_033741187744170187747290Mouse
15021247Gm51738predicted gene, 517381187745946187750630Mouse
733684Ush2ausherin1187995035188697694Mouse
329964700LOC131296908STARR-seq mESC enhancer starr_033751188150546188151569Mouse
10027960Gm39735predicted gene, 397351188274060188282751Mouse
329969720LOC131296909STARR-seq mESC enhancer starr_033761188312962188314929Mouse
9637025Gm36456predicted gene, 364561188315199188340726Mouse
329963363LOC131296910STARR-seq mESC enhancer starr_033771188352097188353663Mouse
14998282Gm25095predicted gene, 250951188355120188355250Mouse
15000162Gm25269predicted gene, 252691188492673188492776Mouse
329969726LOC131296911STARR-seq mESC enhancer starr_033791188583875188587518Mouse
329969629LOC131296912STARR-seq mESC enhancer starr_033801188604598188606352Mouse
7488767n-TNgtt3nuclear encoded tRNA asparagine 3 (anticodon GTT)1188673603188673676Mouse
1321691Kctd3potassium channel tetramerisation domain containing 31188703292188740095Mouse
329962576LOC131296913STARR-seq mESC enhancer starr_033831188730288188732070Mouse
329963203LOC131296914STARR-seq mESC enhancer starr_033851188737459188740473Mouse
329967551LOC131296915STARR-seq mESC enhancer starr_033871188747163188749223Mouse
329968780LOC131296916STARR-seq mESC enhancer starr_033881188757186188758778Mouse
9625352Gm36561predicted gene, 365611188766956188771036Mouse
329964825LOC131296917STARR-seq mESC enhancer starr_033891188792249188794045Mouse
329968848LOC131296918STARR-seq mESC enhancer starr_033901188799147188800749Mouse
329967520LOC131296919STARR-seq mESC enhancer starr_033911188809195188811023Mouse
5142860Gm18698predicted gene, 186981188810342188810966Mouse
39128716Gm57563predicted gene, 575631188816510188816573Mouse
39130373Gm53520predicted gene, 535201188818782188875730Mouse
329965540LOC131296920STARR-seq mESC enhancer starr_033921188874011188875555Mouse
39130867LOC110120366VISTA enhancer mm1191188919471188920798Mouse
732064Kcnk2potassium channel, subfamily K, member 21188940127189134951Mouse
2299652Pdcd5-psprogrammed cell death 5, pseudogene1189009519189010044Mouse
21076151A430027H14RikRIKEN cDNA A430027H14 gene1189075248189077089Mouse
329969409LOC131296921STARR-seq mESC enhancer starr_033951189137810189140563Mouse
329965088LOC131296922STARR-seq mESC enhancer starr_033961189174622189177149Mouse
12797828Gm46177predicted gene, 461771189208644189232535Mouse
329963411LOC131296923STARR-seq mESC enhancer starr_033971189242128189243634Mouse
329962055LOC131296924STARR-seq mESC enhancer starr_033981189300564189303206Mouse

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1103933405191225397Mouse
4141149Hbnr4_mHeligmosomoides bakeri nematode resistance 4 (mouse)Not determined147125258188983224Mouse
1357618Splq5_mspleen weight QTL 5 (mouse)Not determined1150193673188359312Mouse
1357493Lgaq3_mlate growth adjusted QTL 3 (mouse)Not determined1150193673188359312Mouse
1357485Lgq4_mlate growth QTL 4 (mouse)Not determined1150193673188359312Mouse
1357889Lprq3_mlipoprotein QTL 3 (mouse)Not determined1152038741186038913Mouse
1301301Sle1_msystemic lupus erythmatosus susceptibility 1 (mouse)Not determined1152038741186038913Mouse
1301025Lbw7_mlupus NZB x NZW 7 (mouse)Not determined1152038741186038913Mouse
1301614Cgnz1_mchronic glomerulonephritis in NZM 1 (mouse)Not determined1152038741186038913Mouse
4141554Cfmq1_mcystic fibrosis modifier QTL 1 (mouse)Not determined1152038741186038913Mouse
13464138Hdlq107_mHDL QTL 107 (mouse)1152132744186132744Mouse
11251722Ewc1_methanol withdrawal and consumption 1 (mouse)1152132744186132744Mouse
10054270Nba10_mNew Zealand Black autoimmunity 10 (mouse)Not determined1152794822186438620Mouse
10412074Nhdlt1_mnon-HDL cholesterol and triglyceride levels 1 (mouse)Not determined1153675990187676105Mouse
10054490Opefa_mopen field activity (mouse)Not determined1153712853187712853Mouse
10043963Obq25_mobesity QTL 25 (mouse)Not determined1154410512188410512Mouse
12904936Edlmmq1_mextensor digitorum longus muscle mass QTL 1 (mouse)1155002940189002940Mouse
12904944Tammq1_mtibialis anterior muscle mass QTL 1 (mouse)1155002940189002940Mouse
12904957Gmmq1_mgastrocnemius muscle mass QTL 1 (mouse)1155002940189002940Mouse
10054271Nba9_mNew Zealand Black autoimmunity 9 (mouse)Not determined1155525623189527533Mouse
4141244Bmd5c_mbone mineral density 5c (mouse)Not determined155526796189526897Mouse
4142182Shali5_msurvival time to hyperoxic acute lung injury 5 (mouse)Not determined155582237185994196Mouse
11081167Tir8_mtrypanosome infection response 8 (mouse)1155716221189716369Mouse
1301619Cafq1_mcaffeine metabolism QTL 1 (mouse)Not determined1155716221189716369Mouse
1301932Ssta2_msusceptibility to Salmonella typhimurium antigens 2 (mouse)Not determined1155716221189716369Mouse
1301866Cplaq3_mcircadian period of locomotor activity 3 (mouse)Not determined1155721528189722608Mouse
1302132Pbw1_mpentobarbital withdrawal QTL 1 (mouse)Not determined1155831765189831892Mouse
4141165Bglu3_mblood glucose level 3 (mouse)Not determined155831765189831892Mouse
10766456Sle21_msystematic lupus erythematosus susceptibility 21 (mouse)1155831765189831892Mouse
1301122Cd8mts1_mCD8 T memory cell subset 1 (mouse)Not determined1155831765189831892Mouse
1301189Lmr8_mleishmaniasis resistance 8 (mouse)Not determined1156602037189303617Mouse
1301134Bmd1_mbone mineral density 1 (mouse)Not determined1156602037189303617Mouse
1301602Bslm4_mbasal locomotor activity 4 (mouse)Not determined1157456299191456436Mouse
1300732Melm2_mmelanoma modifier 2 (mouse)Not determined1157456299191456436Mouse
1301216Cbm1_mcerebellum weight 1 (mouse)Not determined1157456299191456436Mouse
1300948Fglu2_mfasting glucose 2 (mouse)Not determined1157456299191456436Mouse
1301565Mnotch_mmodifier of Notch (mouse)Not determined1157456299191456436Mouse
4141245Cq2_mcholesterol QTL 2 (mouse)Not determined1157456299191456436Mouse
1300745Gvhd1_mgraft-versus-host disease 1 (mouse)Not determined1157456299191456436Mouse
1301202Yaa4_mY-linked autoimmune acceleration 4 (mouse)Not determined1158468817192468938Mouse
1300842Sle9_msystematic lupus erythematosus susceptibility 9 (mouse)Not determined1158468817192468938Mouse
11059558Lmr20c_mleishmaniasis resistance 20c (mouse)1158468817192468938Mouse
11059557Lmr20a_mleishmaniasis resistance 20a (mouse)1158468817192468938Mouse
11059556Lmr20b_mleishmaniasis resistance 20b (mouse)1158468817192468938Mouse
10402498Lmr20_mleishmaniasis resistance 20 (mouse)Not determined1158468817192468938Mouse
1301431Pcho1_mplasma cholesterol 1 (mouse)Not determined1159262573193262693Mouse
12790987Tgl5_mtriglyceride 5 (mouse)1160097157194097157Mouse
12790988Phdlc5_mplasma HDL cholesterol 5 (mouse)9160097157194097157Mouse
1300823Ath9_matherosclerosis 9 (mouse)Not determined1160112768194112883Mouse
1301632Bw8q1_mbody weight at 8 weeks QTL 1 (mouse)Not determined1161201261195154279Mouse
1301596Elnt_mescape latencies during navigation task (mouse)Not determined1162145207194111528Mouse
1301309Emo1_memotionality 1 (mouse)Not determined1162977097185994196Mouse
1300888Berr1_mberghei resistance locus 1 (mouse)Not determined1164143227190534272Mouse
1301339Hdlq15_mHDL QTL 15 (mouse)Not determined1165873675195154279Mouse
1302158Fembrs5_mfemur breaking strength 5 (mouse)Not determined1167462514195154279Mouse
1559024Zit1_mzinc induced tolerance 1 (mouse)Not determined1167462514195154279Mouse
4141483Femwf7_mfemur work to failure 7 (mouse)Not determined167462514195154279Mouse
12792983Liq1_mlimb inflammation QTL 1 (mouse)1167586086191225397Mouse
1301333Mop3_mmorphine preference 3 (mouse)Not determined1167756737189303617Mouse
1558802Skmw6_mskeletal muscle weight 6 (mouse)Not determined1167954584195154279Mouse
1301251Scc3_mcolon tumor susceptibility 3 (mouse)Not determined1168213823195154279Mouse
1301132Mors1_mmodifier of obesity related sterility 1 (mouse)Not determined1170379500195154279Mouse
4142389Scfr1_mstem cell frequency regulator 1 (mouse)Not determined171632048189303617Mouse
1300727Mptp1_mMPTP sensitivity 1 (mouse)Not determined1171632048192681050Mouse
1357732Tbbmd1_mtotal body bone mineral density 1 (mouse)Not determined1171983110195154279Mouse
11049575Lmr8b_mleishmaniasis resistance 8b (mouse)1172303451195154279Mouse
1301652Cpfd2_mcerebellum pattern fissures (mouse)Not determined1172303451195154279Mouse
10043863Swrl5_mSWR lupus locus 5 (mouse)Not determined1172303451195154279Mouse
12880426V25Dq2_mvitamin D inactive form serum level QTL 2 (mouse)1172532197195154279Mouse
12880429V25Dq1_mvitamin D inactive form serum level QTL 1 (mouse)1172632197195154279Mouse
1302023Orch4_mautoimmune orchitis resistance 4 (mouse)Not determined1175211318195154279Mouse
11532690Sluc37_msusceptibility to lung cancer 37 (mouse)1175468817194111528Mouse
1357692Axtq1_manxiety QTL 1 (mouse)Not determined1180832317191851043Mouse
1357620Aaj1_manxiety in A/J 1 (mouse)Not determined1180832317191851043Mouse
4141034Bmd1c_mbone mineral density 1c (mouse)Not determined185909790189303617Mouse
14700798Mencq1_mmeniscus calcification QTL 1 (mouse)1187333197189051197Mouse
1300946Sle1c_msystematic lupus erythematosus susceptibility 1c (mouse)Not determined1188594514189303617Mouse


Additional Information

Database Acc Id Source(s)
MGD MGI:3619535 MouseQtl

RGD Curation Notes
Note Type Note Reference