SEC24C (SEC24 homolog C, COPII coat complex component) - Rat Genome Database

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Gene: SEC24C (SEC24 homolog C, COPII coat complex component) Homo sapiens
Analyze
Symbol: SEC24C
Name: SEC24 homolog C, COPII coat complex component
RGD ID: 1321602
HGNC Page HGNC:10705
Description: Enables SNARE binding activity and zinc ion binding activity. Involved in COPII-coated vesicle cargo loading. Located in cytosol. Part of COPII vesicle coat.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: KIAA0079; protein transport protein Sec24C; SEC24 family member C; SEC24 family, member C; SEC24 related gene family, member C; SEC24-related protein C
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381073,744,372 - 73,772,161 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1073,744,372 - 73,772,161 (+)EnsemblGRCh38hg38GRCh38
GRCh371075,504,130 - 75,531,919 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361075,174,138 - 75,201,925 (+)NCBINCBI36Build 36hg18NCBI36
Build 341075,174,137 - 75,201,923NCBI
Celera1068,787,456 - 68,815,097 (+)NCBICelera
Cytogenetic Map10q22.2NCBI
HuRef1069,499,590 - 69,527,108 (+)NCBIHuRef
CHM1_11075,785,879 - 75,813,704 (+)NCBICHM1_1
T2T-CHM13v2.01074,615,788 - 74,643,577 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SEC24CHumanmicrocephaly  IAGPRGD:385971028554872ClinVar Annotator: match by term: MicrocephalyClinVarPMID:25741868

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Object Symbol
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Original Reference(s)
SEC24CHuman(1->4)-beta-D-glucan multiple interactionsISORGD:15515876480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of SEC24C mRNACTDPMID:36331819
SEC24CHuman1,2-dimethylhydrazine increases expressionISORGD:155158764804641,2-Dimethylhydrazine results in increased expression of SEC24C mRNACTDPMID:22206623
SEC24CHuman17beta-estradiol increases expressionISORGD:15515876480464Estradiol results in increased expression of SEC24C mRNACTDPMID:39298647
SEC24CHuman17beta-hydroxy-5alpha-androstan-3-one increases expressionEXP 6480464Dihydrotestosterone results in increased expression of SEC24C mRNACTDPMID:29581250
SEC24CHuman2,3,7,8-tetrachlorodibenzodioxine decreases expressionISORGD:15515876480464Tetrachlorodibenzodioxin results in decreased expression of SEC24C mRNACTDPMID:26290441
SEC24CHuman2,3,7,8-tetrachlorodibenzodioxine decreases expressionISORGD:15977396480464Tetrachlorodibenzodioxin results in decreased expression of SEC24C mRNACTDPMID:33387578
SEC24CHuman2,6-dimethoxyphenol multiple interactionsEXP 6480464[Sodium Chloride co-treated with pyrogallol 1,3-dimethyl ether] results in decreased expression of SEC24C protein; [Sodium more ...CTDPMID:38598786
SEC24CHuman2-hydroxypropanoic acid decreases expressionEXP 6480464Lactic Acid results in decreased expression of SEC24C mRNACTDPMID:30851411
SEC24CHuman3,4-methylenedioxymethamphetamine increases expressionISORGD:15515876480464N-Methyl-3,4-methylenedioxyamphetamine results in increased expression of SEC24C mRNACTDPMID:20188158
SEC24CHumanacrolein multiple interactionsEXP 6480464[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in increased oxidation of more ...CTDPMID:32699268
SEC24CHumanactinomycin D multiple interactionsEXP 6480464[Dactinomycin co-treated with nutlin 3] results in increased secretion of SEC24C proteinCTDPMID:38460933
SEC24CHumanaflatoxin B1 increases methylationEXP 6480464Aflatoxin B1 results in increased methylation of SEC24C gene; Aflatoxin B1 results in increased methylation more ...CTDPMID:27153756|PMID:30157460
SEC24CHumanalachlor affects expressionISORGD:15977396480464alachlor affects the expression of SEC24C mRNACTDPMID:19425180
SEC24CHumanalpha-pinene multiple interactionsEXP 6480464[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in increased oxidation of more ...CTDPMID:32699268
SEC24CHumanantirheumatic drug decreases expressionEXP 6480464Antirheumatic Agents results in decreased expression of SEC24C mRNACTDPMID:24449571
SEC24CHumanarsane multiple interactionsEXP 6480464[sodium arsenite results in increased abundance of Arsenic] which results in decreased expression of SEC24C more ...CTDPMID:39836092
SEC24CHumanarsenic atom multiple interactionsEXP 6480464[sodium arsenite results in increased abundance of Arsenic] which results in decreased expression of SEC24C more ...CTDPMID:39836092
SEC24CHumanbisphenol A increases expressionISORGD:15977396480464bisphenol A results in increased expression of SEC24C mRNACTDPMID:25181051|PMID:34947998
SEC24CHumanbisphenol A increases expressionEXP 6480464bisphenol A results in increased expression of SEC24C proteinCTDPMID:34186270|PMID:37567409
SEC24CHumanbisphenol A increases expressionISORGD:15515876480464bisphenol A results in increased expression of SEC24C mRNACTDPMID:33221593

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Biological Process
1 to 9 of 9 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SEC24CHumanCOPII-coated vesicle cargo loading involved_inIDA 150520179 PMID:17499046, PMID:18843296UniProtPMID:17499046|PMID:18843296
SEC24CHumanCOPII-coated vesicle cargo loading involved_inIBAPANTHER:PTN000351470|SGD:S000001140|SGD:S000001371|SGD:S000004994|UniProtKB:O94855|UniProtKB:O95486|UniProtKB:O95487|UniProtKB:P53992150520179 GO_CentralGO_REF:0000033
SEC24CHumanendoplasmic reticulum to Golgi vesicle-mediated transport involved_inNAS 150520179 PMID:10329445UniProtPMID:10329445
SEC24CHumanendoplasmic reticulum to Golgi vesicle-mediated transport involved_inIEAInterPro:IPR006895|InterPro:IPR006896|InterPro:IPR006900|InterPro:IPR036174|InterPro:IPR036175|InterPro:IPR041742150520179 InterProGO_REF:0000002
SEC24CHumanendoplasmic reticulum to Golgi vesicle-mediated transport involved_inIMP 150520179 PMID:20427317UniProtPMID:20427317
SEC24CHumanin utero embryonic development acts_upstream_of_or_withinIEAUniProtKB:G3X972|ensembl:ENSMUSP00000045955150520179 EnsemblGO_REF:0000107
SEC24CHumanintracellular protein transport involved_inIEAInterPro:IPR006895|InterPro:IPR006896|InterPro:IPR006900|InterPro:IPR036174|InterPro:IPR036175|InterPro:IPR041742150520179 InterProGO_REF:0000002
SEC24CHumanprotein transport involved_inIEAUniProtKB-KW:KW-0653150520179 UniProtGO_REF:0000043
SEC24CHumanvesicle-mediated transport involved_inIEAUniProtKB-KW:KW-0931150520179 UniProtGO_REF:0000043
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Cellular Component
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Object Symbol
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Reference
Notes
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Original Reference(s)
SEC24CHumanCOPII vesicle coat part_ofIDA 150520179 PMID:10075675, PMID:10329445, PMID:17499046UniProtPMID:10075675|PMID:10329445|PMID:17499046
SEC24CHumanCOPII vesicle coat part_ofIBAFB:FBgn0262126|MGI:2139764|PANTHER:PTN000351470|SGD:S000001140|SGD:S000001371|SGD:S000004994|UniProtKB:C0H5J6|UniProtKB:O94855|UniProtKB:O95486|UniProtKB:O95487|UniProtKB:P53992|UniProtKB:Q57XV4|UniProtKB:Q580T3150520179 GO_CentralGO_REF:0000033
SEC24CHumanCOPII vesicle coat part_ofIEAInterPro:IPR006895|InterPro:IPR006896|InterPro:IPR006900|InterPro:IPR036174|InterPro:IPR036175|InterPro:IPR041742150520179 InterProGO_REF:0000002
SEC24CHumanCOPII vesicle coat part_ofNAS 150520179 PMID:10214955UniProtPMID:10214955
SEC24CHumancytoplasm located_inIEAUniProtKB-KW:KW-0963150520179 UniProtGO_REF:0000043
SEC24CHumancytoplasmic vesicle located_inIEAUniProtKB-KW:KW-0968150520179 UniProtGO_REF:0000043
SEC24CHumancytosol located_inTAS 150520179 ReactomeReactome:R-HSA-203973|Reactome:R-HSA-203979|Reactome:R-HSA-204008|Reactome:R-HSA-5694409|Reactome:R-HSA-5694413|Reactome:R-HSA-5694417|Reactome:R-HSA-5694418|Reactome:R-HSA-5694421|Reactome:R-HSA-5694435|Reactome:R-HSA-5694439|Reactome:R-HSA-5694441|Reactome:R-HSA-5694446|Reactome:R-HSA-5694522|Reactome:R-HSA-5694527|Reactome:R-HSA-983422
SEC24CHumancytosol located_inIDA 150520179 PMID:10075675UniProtPMID:10075675
SEC24CHumancytosol located_inIEAUniProtKB-SubCell:SL-0091150520179 UniProtGO_REF:0000044
SEC24CHumanendoplasmic reticulum located_inIEAUniProtKB-KW:KW-0256150520179 UniProtGO_REF:0000043
SEC24CHumanendoplasmic reticulum exit site is_active_inIBAFB:FBgn0262126|PANTHER:PTN000351470|PomBase:SPAC22F8.08|TAIR:locus:2038633150520179 GO_CentralGO_REF:0000033
SEC24CHumanendoplasmic reticulum membrane located_inTAS 150520179 ReactomeReactome:R-HSA-203973|Reactome:R-HSA-203979|Reactome:R-HSA-204008|Reactome:R-HSA-2130731|Reactome:R-HSA-2213243|Reactome:R-HSA-5694417|Reactome:R-HSA-5694435|Reactome:R-HSA-5694436|Reactome:R-HSA-5694522|Reactome:R-HSA-5694527|Reactome:R-HSA-983424|Reactome:R-HSA-983425|Reactome:R-HSA-983426|Reactome:R-NUL-1655838|Reactome:R-NUL-1655840
SEC24CHumanendoplasmic reticulum membrane located_inIEAUniProtKB-SubCell:SL-0097150520179 UniProtGO_REF:0000044
SEC24CHumanER to Golgi transport vesicle membrane located_inIEAUniProtKB-SubCell:SL-0078150520179 UniProtGO_REF:0000044
SEC24CHumanER to Golgi transport vesicle membrane located_inTAS 150520179 ReactomeReactome:R-HSA-203973|Reactome:R-HSA-5694409|Reactome:R-HSA-5694418|Reactome:R-HSA-5694439|Reactome:R-HSA-5694441|Reactome:R-HSA-5694446|Reactome:R-HSA-983422|Reactome:R-HSA-983424
SEC24CHumanmembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043
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Molecular Function
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Object Symbol
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Term
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Evidence
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Reference
Notes
Source
Original Reference(s)
SEC24CHumanmetal ion binding enablesIEAUniProtKB-KW:KW-0479150520179 UniProtGO_REF:0000043
SEC24CHumanprotein binding enablesIPIUniProtKB:P00540|UniProtKB:Q15437150520179 PMID:31515488IntActPMID:31515488
SEC24CHumanprotein binding enablesIPIUniProtKB:Q8NEL9150520179 PMID:17428803UniProtPMID:17428803
SEC24CHumanprotein binding enablesIPIUniProtKB:Q15436150520179 PMID:10075675, PMID:18692470IntActPMID:10075675|PMID:18692470
SEC24CHumanprotein binding enablesIPIUniProtKB:Q86WV6150520179 PMID:30842662UniProtPMID:30842662
SEC24CHumanprotein binding enablesIPIUniProtKB:O43516|UniProtKB:P00540150520179 PMID:25416956IntActPMID:25416956
SEC24CHumanprotein binding enablesIPIUniProtKB:Q9QVY3150520179 PMID:15899885UniProtPMID:15899885
SEC24CHumanprotein binding enablesIPIUniProtKB:Q15437150520179 PMID:16189514IntActPMID:16189514
SEC24CHumanprotein binding enablesIPIUniProtKB:Q15436|UniProtKB:Q15437150520179 PMID:33961781, PMID:35271311IntActPMID:33961781|PMID:35271311
SEC24CHumanSNARE binding enablesIPIUniProtKB:O14653|UniProtKB:Q13190150520179 PMID:18843296UniProtPMID:18843296
SEC24CHumanSNARE binding enablesIBAPANTHER:PTN000351470|UniProtKB:O94855|UniProtKB:P53992150520179 GO_CentralGO_REF:0000033
SEC24CHumanzinc ion binding enablesIEAInterPro:IPR006895|InterPro:IPR036174150520179 InterProGO_REF:0000002
SEC24CHumanzinc ion binding enablesIDA 150520179 PMID:18843296UniProtPMID:18843296
SEC24CHumanzinc ion binding enablesIBAPANTHER:PTN000351470|UniProtKB:O94855|UniProtKB:O95486|UniProtKB:O95487|UniProtKB:P53992150520179 GO_CentralGO_REF:0000033
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Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SEC24CHumanEndoplasmic Reticulum-associated degradation pathway  IEA 6907045 KEGGhsa:04141
1 to 20 of 131 rows
Object Symbol
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Term
Qualifier
Evidence
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Reference
Notes
Source
Original Reference(s)
SEC24CHumanAbnormal aortic arch morphology  IAGP 8699517 HPOORPHA:567
SEC24CHumanAbnormal aortic valve morphology  IAGP 8699517 HPOORPHA:567
SEC24CHumanAbnormal cardiovascular system morphology  IAGP 8699517 HPOORPHA:567
SEC24CHumanAbnormal dental enamel morphology  IAGP 8699517 HPOORPHA:567
SEC24CHumanAbnormal eyelid morphology  IAGP 8699517 HPOORPHA:567
SEC24CHumanAbnormal facial shape  IAGP 8699517 HPOORPHA:567
SEC24CHumanAbnormal lung lobation  IAGP 8699517 HPOORPHA:567
SEC24CHumanAbnormal pulmonary valve morphology  IAGP 8699517 HPOORPHA:567
SEC24CHumanAbnormal skull morphology  IAGP 8699517 HPOORPHA:567
SEC24CHumanAbnormal thorax morphology  IAGP 8699517 HPOORPHA:567
SEC24CHumanAbnormality of the dentition  IAGP 8699517 HPOORPHA:567
SEC24CHumanAbnormality of the pharynx  IAGP 8699517 HPOORPHA:567
SEC24CHumanAbnormality of the tonsils  IAGP 8699517 HPOORPHA:567
SEC24CHumanAbnormality of the uterus  IAGP 8699517 HPOORPHA:567
SEC24CHumanAbnormality of thrombocytes  IAGP 8699517 HPOORPHA:567
SEC24CHumanAcne  IAGP 8699517 HPOORPHA:567
SEC24CHumanAganglionic megacolon  IAGP 8699517 HPOORPHA:567
SEC24CHumanAnal atresia  IAGP 8699517 HPOORPHA:567
SEC24CHumanAnorectal anomaly  IAGP 8699517 HPOORPHA:567
SEC24CHumanAnxiety  IAGP 8699517 HPOORPHA:567
1 to 20 of 131 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SEC24CHumanMicrocephaly  IAGPRGD:385971028554872ClinVar Annotator: match by term: MicrocephalyClinVarPMID:25741868

#
Reference Title
Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
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PMID:7584044   PMID:10075675   PMID:10214955   PMID:10329445   PMID:11031247   PMID:11252894   PMID:12477932   PMID:14744259   PMID:15013749   PMID:15302935   PMID:15489334   PMID:15899885  
PMID:16189514   PMID:16751776   PMID:17373700   PMID:17428803   PMID:17499046   PMID:18029348   PMID:18329616   PMID:18692470   PMID:18843296   PMID:19269366   PMID:19738201   PMID:19786618  
PMID:20085233   PMID:20427317   PMID:20467437   PMID:21145461   PMID:21454670   PMID:21525241   PMID:21832049   PMID:21873635   PMID:21988832   PMID:22404651   PMID:22586326   PMID:22623428  
PMID:22658674   PMID:22779921   PMID:22863883   PMID:22939629   PMID:23288844   PMID:23658022   PMID:24453475   PMID:24550385   PMID:24711643   PMID:24999758   PMID:25036637   PMID:25416956  
PMID:25921289   PMID:26344197   PMID:26496610   PMID:26618866   PMID:26638075   PMID:26673895   PMID:26777405   PMID:26831064   PMID:27107014   PMID:27248496   PMID:27684187   PMID:27716508  
PMID:28298439   PMID:28319085   PMID:28515276   PMID:28679754   PMID:29229926   PMID:29467282   PMID:29509190   PMID:29778605   PMID:29844126   PMID:29939162   PMID:29955894   PMID:30021884  
PMID:30463901   PMID:30596474   PMID:30842662   PMID:30884312   PMID:30979931   PMID:31048545   PMID:31091453   PMID:31515488   PMID:31536960   PMID:31586073   PMID:31995728   PMID:32058034  
PMID:32129710   PMID:32513696   PMID:32807901   PMID:33144569   PMID:33239621   PMID:33277362   PMID:33545068   PMID:33649557   PMID:33957083   PMID:33961781   PMID:34079125   PMID:34504087  
PMID:34591612   PMID:34638806   PMID:34709727   PMID:34728620   PMID:35013218   PMID:35013556   PMID:35256949   PMID:35271311   PMID:35509820   PMID:35563538   PMID:35696571   PMID:35777956  
PMID:35831314   PMID:35844135   PMID:35906200   PMID:35944360   PMID:36114006   PMID:36215168   PMID:36225252   PMID:36244648   PMID:36424410   PMID:36634849   PMID:37059091   PMID:37223481  
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SEC24C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381073,744,372 - 73,772,161 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1073,744,372 - 73,772,161 (+)EnsemblGRCh38hg38GRCh38
GRCh371075,504,130 - 75,531,919 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361075,174,138 - 75,201,925 (+)NCBINCBI36Build 36hg18NCBI36
Build 341075,174,137 - 75,201,923NCBI
Celera1068,787,456 - 68,815,097 (+)NCBICelera
Cytogenetic Map10q22.2NCBI
HuRef1069,499,590 - 69,527,108 (+)NCBIHuRef
CHM1_11075,785,879 - 75,813,704 (+)NCBICHM1_1
T2T-CHM13v2.01074,615,788 - 74,643,577 (+)NCBIT2T-CHM13v2.0
Sec24c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391420,722,709 - 20,744,920 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1420,724,376 - 20,744,920 (+)EnsemblGRCm39 Ensembl
GRCm381420,674,285 - 20,694,852 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1420,674,308 - 20,694,852 (+)EnsemblGRCm38mm10GRCm38
MGSCv371421,493,543 - 21,514,072 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361419,462,895 - 19,483,402 (+)NCBIMGSCv36mm8
Celera1417,057,076 - 17,077,620 (+)NCBICelera
Cytogenetic Map14A3NCBI
cM Map1411.53NCBI
Sec24c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8153,651,714 - 3,674,420 (-)NCBIGRCr8
mRatBN7.2153,602,460 - 3,624,524 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl153,602,460 - 3,624,422 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx153,612,651 - 3,634,612 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0154,999,127 - 5,021,088 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0153,611,460 - 3,633,423 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0154,035,196 - 4,057,209 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl154,035,196 - 4,057,157 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0158,136,414 - 8,158,441 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4153,827,910 - 3,849,871 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera15969,764 - 991,725 (+)NCBICelera
Cytogenetic Map15p16NCBI
Sec24c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495543718,132,969 - 18,161,167 (-)NCBIChiLan1.0ChiLan1.0
SEC24C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2885,895,130 - 85,923,080 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11085,900,407 - 85,928,404 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01070,267,194 - 70,295,116 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11072,940,855 - 72,968,027 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1072,943,116 - 72,968,027 (+)Ensemblpanpan1.1panPan2
SEC24C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1424,183,768 - 24,209,062 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl424,184,225 - 24,209,060 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha424,321,736 - 24,346,654 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0424,464,258 - 24,489,180 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl424,464,359 - 24,489,181 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1424,361,452 - 24,386,365 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0424,562,030 - 24,586,984 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0424,917,128 - 24,942,052 (+)NCBIUU_Cfam_GSD_1.0
Sec24c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721356,881,827 - 56,909,455 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365215,374,555 - 5,402,123 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SEC24C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1476,473,776 - 76,499,125 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11476,473,706 - 76,499,127 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21482,600,366 - 82,625,765 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SEC24C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1957,600,783 - 57,628,501 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl957,601,863 - 57,626,038 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604818,177,900 - 18,206,162 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sec24c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247547,261,511 - 7,288,869 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247547,261,770 - 7,288,874 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in SEC24C
92 total Variants

1 to 10 of 108 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh38/hg38 10q21.2-22.2(chr10:62229688-74468143)x1 copy number loss See cases [RCV000052530] Chr10:62229688..74468143 [GRCh38]
Chr10:63989447..76227901 [GRCh37]
Chr10:63659453..75897907 [NCBI36]
Chr10:10q21.2-22.2
pathogenic
GRCh38/hg38 10q22.1-22.2(chr10:72720628-75612374)x1 copy number loss See cases [RCV000052531] Chr10:72720628..75612374 [GRCh38]
Chr10:74480386..77372132 [GRCh37]
Chr10:74150392..77042138 [NCBI36]
Chr10:10q22.1-22.2
pathogenic
GRCh38/hg38 10q21.1-22.2(chr10:58436466-74415216)x1 copy number loss See cases [RCV000052511] Chr10:58436466..74415216 [GRCh38]
Chr10:60196226..76174974 [GRCh37]
Chr10:59866232..75844980 [NCBI36]
Chr10:10q21.1-22.2
pathogenic
NM_004922.3(SEC24C):c.1030C>T (p.Pro344Ser) single nucleotide variant Malignant melanoma [RCV000062074] Chr10:73763532 [GRCh38]
Chr10:75523290 [GRCh37]
Chr10:75193296 [NCBI36]
Chr10:10q22.2
not provided
NM_004922.3(SEC24C):c.1143C>T (p.Ile381=) single nucleotide variant Malignant melanoma [RCV000062075] Chr10:73763899 [GRCh38]
Chr10:75523657 [GRCh37]
Chr10:75193663 [NCBI36]
Chr10:10q22.2
not provided
GRCh38/hg38 10q21.3-22.3(chr10:67196567-79422057)x3 copy number gain See cases [RCV000135438] Chr10:67196567..79422057 [GRCh38]
Chr10:68956325..81181813 [GRCh37]
Chr10:68626331..80851819 [NCBI36]
Chr10:10q21.3-22.3
pathogenic
GRCh38/hg38 10q21.3-22.2(chr10:63402579-75296099)x1 copy number loss See cases [RCV000136658] Chr10:63402579..75296099 [GRCh38]
Chr10:65162339..77055857 [GRCh37]
Chr10:64832345..76725863 [NCBI36]
Chr10:10q21.3-22.2
pathogenic|likely benign
GRCh38/hg38 10q11.23-23.2(chr10:50729367-87147204)x3 copy number gain See cases [RCV000138007] Chr10:50729367..87147204 [GRCh38]
Chr10:52489127..88906961 [GRCh37]
Chr10:52159133..88896941 [NCBI36]
Chr10:10q11.23-23.2
pathogenic
GRCh37/hg19 10p15.3-q26.3(chr10:93297-135378918)x3 copy number gain See cases [RCV000448750] Chr10:93297..135378918 [GRCh37]
Chr10:10p15.3-q26.3
pathogenic
GRCh37/hg19 10p15.3-q26.3(chr10:100027-135427143) copy number gain See cases [RCV000511389] Chr10:100027..135427143 [GRCh37]
Chr10:10p15.3-q26.3
pathogenic|uncertain significance
1 to 10 of 108 rows

Predicted Target Of
Summary Value
Count of predictions:3482
Count of miRNA genes:914
Interacting mature miRNAs:1111
Transcripts:ENST00000339365, ENST00000345254, ENST00000411652, ENST00000465076, ENST00000477008, ENST00000496827, ENST00000535742, ENST00000540668, ENST00000546025
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597346456GWAS1442530_Hforced expiratory volume QTL GWAS1442530 (human)2e-25forced expiratory volumeforced expiratory volume (CMO:0000254)107375269473752695Human
597103906GWAS1199980_Hself rated health QTL GWAS1199980 (human)4e-08self rated health107375993373759934Human
597260128GWAS1356202_Hforced expiratory volume QTL GWAS1356202 (human)5e-12forced expiratory volumeforced expiratory volume (CMO:0000254)107376624173766242Human

RH44836  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371159,192,676 - 59,192,781UniSTSGRCh37
GRCh371075,502,799 - 75,502,905UniSTSGRCh37
Build 361075,172,805 - 75,172,911RGDNCBI36
Celera1068,786,123 - 68,786,229RGD
Celera1156,553,956 - 56,554,061UniSTS
Cytogenetic Map10q22.2UniSTS
HuRef1155,540,430 - 55,540,535UniSTS
HuRef1069,498,258 - 69,498,364UniSTS
GeneMap99-GB4 RH Map10380.97UniSTS
WI-18926  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371075,531,173 - 75,531,320UniSTSGRCh37
Build 361075,201,179 - 75,201,326RGDNCBI36
Celera1068,814,351 - 68,814,498RGD
Cytogenetic Map10q22.3UniSTS
Cytogenetic Map10q22.2UniSTS
HuRef1069,526,348 - 69,526,495UniSTS
GeneMap99-GB4 RH Map10381.17UniSTS
Whitehead-RH Map10458.1UniSTS
RH25307  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371075,531,376 - 75,531,854UniSTSGRCh37
Build 361075,201,382 - 75,201,860RGDNCBI36
Celera1068,814,554 - 68,815,032RGD
Cytogenetic Map10q22.3UniSTS
Cytogenetic Map10q22.2UniSTS
HuRef1069,526,551 - 69,527,029UniSTS
SEC24C_392  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371075,531,091 - 75,531,928UniSTSGRCh37
Build 361075,201,097 - 75,201,934RGDNCBI36
Celera1068,814,269 - 68,815,106RGD
HuRef1069,526,266 - 69,527,103UniSTS
D10S2187  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371075,531,492 - 75,531,608UniSTSGRCh37
Build 361075,201,498 - 75,201,614RGDNCBI36
Celera1068,814,670 - 68,814,786RGD
Cytogenetic Map10q22.3UniSTS
Cytogenetic Map10q22.2UniSTS
HuRef1069,526,667 - 69,526,783UniSTS
Whitehead-YAC Contig Map10 UniSTS
RH44071  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371075,531,630 - 75,531,797UniSTSGRCh37
Build 361075,201,636 - 75,201,803RGDNCBI36
Celera1068,814,808 - 68,814,975RGD
Cytogenetic Map10q22.3UniSTS
Cytogenetic Map10q22.2UniSTS
HuRef1069,526,805 - 69,526,972UniSTS
GeneMap99-GB4 RH Map10380.97UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2253 4974 1726 2351 6 624 1951 465 2270 7306 6472 53 3734 1 852 1744 1617 175 1


1 to 30 of 33 rows
RefSeq Transcripts NM_004922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_198597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011540380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011540381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017016967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017016968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047426031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047426032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047426033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047426034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047426035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054367226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054367227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054367228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054367229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054367230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054367231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC022400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK098512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK298598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK299826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK303085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK309918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK316451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL596994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL832110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC018928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ710971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA419040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 33 rows

Ensembl Acc Id: ENST00000339365   ⟹   ENSP00000343405
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1073,744,391 - 73,772,161 (+)Ensembl
Ensembl Acc Id: ENST00000345254   ⟹   ENSP00000321845
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1073,744,372 - 73,772,161 (+)Ensembl
Ensembl Acc Id: ENST00000465076   ⟹   ENSP00000437000
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1073,744,384 - 73,772,159 (+)Ensembl
Ensembl Acc Id: ENST00000477008
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1073,746,867 - 73,752,102 (+)Ensembl
Ensembl Acc Id: ENST00000496827
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1073,767,894 - 73,770,379 (+)Ensembl
Ensembl Acc Id: ENST00000634508   ⟹   ENSP00000489340
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1073,760,110 - 73,763,555 (+)Ensembl
Ensembl Acc Id: ENST00000635550   ⟹   ENSP00000489351
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1073,744,400 - 73,771,235 (+)Ensembl
RefSeq Acc Id: NM_004922   ⟹   NP_004913
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381073,744,372 - 73,772,161 (+)NCBI
GRCh371075,504,039 - 75,531,933 (+)NCBI
Build 361075,174,138 - 75,201,925 (+)NCBI Archive
Celera1068,787,456 - 68,815,097 (+)RGD
HuRef1069,499,590 - 69,527,108 (+)ENTREZGENE
CHM1_11075,785,879 - 75,813,704 (+)NCBI
T2T-CHM13v2.01074,615,788 - 74,643,577 (+)NCBI
Sequence:
RefSeq Acc Id: NM_198597   ⟹   NP_940999
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381073,744,372 - 73,772,161 (+)NCBI
GRCh371075,504,039 - 75,531,933 (+)NCBI
Build 361075,174,138 - 75,201,925 (+)NCBI Archive
Celera1068,787,456 - 68,815,097 (+)RGD
HuRef1069,499,590 - 69,527,108 (+)ENTREZGENE
CHM1_11075,785,879 - 75,813,704 (+)NCBI
T2T-CHM13v2.01074,615,788 - 74,643,577 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011540380   ⟹   XP_011538682
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381073,744,372 - 73,772,161 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011540381   ⟹   XP_011538683
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381073,744,372 - 73,772,161 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047426031   ⟹   XP_047281987
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381073,744,372 - 73,772,161 (+)NCBI
RefSeq Acc Id: XM_047426032   ⟹   XP_047281988
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381073,744,372 - 73,772,161 (+)NCBI
RefSeq Acc Id: XM_047426033   ⟹   XP_047281989
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381073,744,372 - 73,772,161 (+)NCBI
RefSeq Acc Id: XM_047426034   ⟹   XP_047281990
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381073,744,372 - 73,772,161 (+)NCBI
RefSeq Acc Id: XM_047426035   ⟹   XP_047281991
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381073,746,996 - 73,772,161 (+)NCBI
RefSeq Acc Id: XM_054367226   ⟹   XP_054223201
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01074,615,788 - 74,643,577 (+)NCBI
RefSeq Acc Id: XM_054367227   ⟹   XP_054223202
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01074,615,788 - 74,643,577 (+)NCBI
RefSeq Acc Id: XM_054367228   ⟹   XP_054223203
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01074,615,845 - 74,643,577 (+)NCBI
RefSeq Acc Id: XM_054367229   ⟹   XP_054223204
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01074,615,805 - 74,643,577 (+)NCBI
RefSeq Acc Id: XM_054367230   ⟹   XP_054223205
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01074,615,840 - 74,643,577 (+)NCBI
RefSeq Acc Id: XM_054367231   ⟹   XP_054223206
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01074,618,412 - 74,643,577 (+)NCBI
1 to 29 of 29 rows
Protein RefSeqs NP_004913 (Get FASTA)   NCBI Sequence Viewer  
  NP_940999 (Get FASTA)   NCBI Sequence Viewer  
  XP_011538682 (Get FASTA)   NCBI Sequence Viewer  
  XP_011538683 (Get FASTA)   NCBI Sequence Viewer  
  XP_047281987 (Get FASTA)   NCBI Sequence Viewer  
  XP_047281988 (Get FASTA)   NCBI Sequence Viewer  
  XP_047281989 (Get FASTA)   NCBI Sequence Viewer  
  XP_047281990 (Get FASTA)   NCBI Sequence Viewer  
  XP_047281991 (Get FASTA)   NCBI Sequence Viewer  
  XP_054223201 (Get FASTA)   NCBI Sequence Viewer  
  XP_054223202 (Get FASTA)   NCBI Sequence Viewer  
  XP_054223203 (Get FASTA)   NCBI Sequence Viewer  
  XP_054223204 (Get FASTA)   NCBI Sequence Viewer  
  XP_054223205 (Get FASTA)   NCBI Sequence Viewer  
  XP_054223206 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH18928 (Get FASTA)   NCBI Sequence Viewer  
  BAA07558 (Get FASTA)   NCBI Sequence Viewer  
  BAG60784 (Get FASTA)   NCBI Sequence Viewer  
  BAG61695 (Get FASTA)   NCBI Sequence Viewer  
  BAG64196 (Get FASTA)   NCBI Sequence Viewer  
  BAH14822 (Get FASTA)   NCBI Sequence Viewer  
  EAW54515 (Get FASTA)   NCBI Sequence Viewer  
  EAW54516 (Get FASTA)   NCBI Sequence Viewer  
  EAW54517 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000321845
  ENSP00000321845.6
  ENSP00000343405
  ENSP00000343405.2
GenBank Protein P53992 (Get FASTA)   NCBI Sequence Viewer  
1 to 29 of 29 rows
1 to 5 of 20 rows
1 to 5 of 20 rows
RefSeq Acc Id: NP_004913   ⟸   NM_004922
- UniProtKB: B4DZT4 (UniProtKB/Swiss-Prot),   Q8WV25 (UniProtKB/Swiss-Prot),   P53992 (UniProtKB/Swiss-Prot),   G5EA31 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_940999   ⟸   NM_198597
- UniProtKB: B4DZT4 (UniProtKB/Swiss-Prot),   Q8WV25 (UniProtKB/Swiss-Prot),   P53992 (UniProtKB/Swiss-Prot),   G5EA31 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011538682   ⟸   XM_011540380
- Peptide Label: isoform X1
- UniProtKB: G5EA31 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011538683   ⟸   XM_011540381
- Peptide Label: isoform X1
- UniProtKB: G5EA31 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000321845   ⟸   ENST00000345254
Name Modeler Protein Id AA Range Protein Structure
AF-P53992-F1-model_v2 AlphaFold P53992 1-1094 view protein structure

RGD ID:7217867
Promoter ID:EPDNEW_H14679
Type:initiation region
Name:SEC24C_1
Description:SEC24 homolog C, COPII coat complex component
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381073,744,372 - 73,744,432EPDNEW
RGD ID:6788243
Promoter ID:HG_KWN:10074
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_004922,   NM_198597,   OTTHUMT00000048680,   UC009XRJ.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361075,173,651 - 75,174,227 (+)MPROMDB
RGD ID:6809880
Promoter ID:HG_ACW:8579
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562
Transcripts:SEC24CANDFUT11.OAPR07
Position:
Human AssemblyChrPosition (strand)Source
Build 361075,189,111 - 75,189,611 (+)MPROMDB
RGD ID:6788242
Promoter ID:HG_KWN:10076
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:HeLa_S3
Transcripts:OTTHUMT00000048682
Position:
Human AssemblyChrPosition (strand)Source
Build 361075,196,676 - 75,197,176 (+)MPROMDB
RGD ID:6809881
Promoter ID:HG_ACW:8583
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562
Transcripts:SEC24CANDFUT11.UAPR07-UNSPLICED
Position:
Human AssemblyChrPosition (strand)Source
Build 361075,209,426 - 75,209,926 (+)MPROMDB


1 to 40 of 52 rows
Database
Acc Id
Source(s)
COSMIC SEC24C COSMIC
Ensembl Genes ENSG00000176986 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000339365 ENTREZGENE
  ENST00000339365.2 UniProtKB/Swiss-Prot
  ENST00000345254 ENTREZGENE
  ENST00000345254.9 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.20.10 UniProtKB/Swiss-Prot
  3.40.50.410 UniProtKB/Swiss-Prot
  beta-sandwich domain of Sec23/24 UniProtKB/Swiss-Prot
  Sec23/Sec24 helical domain UniProtKB/Swiss-Prot
  Zn-finger domain of Sec23/24 UniProtKB/Swiss-Prot
GTEx ENSG00000176986 GTEx
HGNC ID HGNC:10705 ENTREZGENE
Human Proteome Map SEC24C Human Proteome Map
InterPro ADF-H/Gelsolin-like_dom_sf UniProtKB/Swiss-Prot
  Gelsolin-like_dom UniProtKB/Swiss-Prot
  Gelsolin-like_dom_sf UniProtKB/Swiss-Prot
  Sec23/24_helical_dom UniProtKB/Swiss-Prot
  Sec23/24_helical_dom_sf UniProtKB/Swiss-Prot
  Sec23/24_trunk_dom UniProtKB/Swiss-Prot
  Sec23_24_beta_S UniProtKB/Swiss-Prot
  SEC23_SEC24_subfamily UniProtKB/Swiss-Prot
  Sec24-like_trunk_dom UniProtKB/Swiss-Prot
  vWFA_dom_sf UniProtKB/Swiss-Prot
  Znf_Sec23_Sec24 UniProtKB/Swiss-Prot
  Znf_Sec23_Sec24_sf UniProtKB/Swiss-Prot
KEGG Report hsa:9632 UniProtKB/Swiss-Prot
NCBI Gene 9632 ENTREZGENE
OMIM 607185 OMIM
PANTHER PROTEIN TRANSPORT PROTEIN SEC24C UniProtKB/Swiss-Prot
  SEC24-RELATED PROTEIN UniProtKB/Swiss-Prot
Pfam Gelsolin UniProtKB/Swiss-Prot
  Sec23_BS UniProtKB/Swiss-Prot
  Sec23_helical UniProtKB/Swiss-Prot
  Sec23_trunk UniProtKB/Swiss-Prot
  zf-Sec23_Sec24 UniProtKB/Swiss-Prot
PharmGKB PA35628 PharmGKB
Superfamily-SCOP beta-sandwich domain of Sec23/24 UniProtKB/Swiss-Prot
  SSF53300 UniProtKB/Swiss-Prot
  SSF81811 UniProtKB/Swiss-Prot
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Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-11 SEC24C  SEC24 homolog C, COPII coat complex component  SEC24C  SEC24 family member C  Symbol and/or name change 5135510 APPROVED
2013-10-29 SEC24C  SEC24 family member C  SEC24C  SEC24 family, member C (S. cerevisiae)  Symbol and/or name change 5135510 APPROVED