Advanced Search (OLGA)

Gene: Prr27 (proline rich 27) Mus musculus

Subscribe to Updates

Analyze

Symbol:

Prr27

Name:

proline rich 27

RGD ID:

1321261

MGI Page

MGI

Description:

Is expressed in craniocervical region bone; lung; and male reproductive gland or organ. Orthologous to human PRR27 (proline rich 27).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

4930432K09Rik; hypothetical protein LOC73779; MGC118299; proline-rich protein 27; uncharacterized protein LOC73779

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PRR27 (proline rich 27)	HGNC	EggNOG, Ensembl, HGNC, NCBI, OrthoDB, OrthoMCL, Treefam
Rattus norvegicus (Norway rat):	Prr27 (proline rich 27)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PRR27 (proline rich 27)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PRR27 (proline rich 27)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Prr27 (proline rich 27)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PRR27 (proline rich 27)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PRR27 (proline rich 27)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Prr27 (proline rich 27)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	PRR27 (proline rich 27)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	87,973,556 - 87,994,245 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	87,973,545 - 87,994,246 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	87,825,697 - 87,846,386 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	87,825,686 - 87,846,387 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	88,254,722 - 88,275,411 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	88,900,258 - 88,920,947 (+)	NCBI		MGSCv36	mm8
MGSCv36	5	87,430,096 - 87,450,785 (+)	NCBI		MGSCv36	mm8
Cytogenetic Map	5	E1	NCBI
cM Map	5	43.56	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Prr27	Mouse	(+)-catechin	multiple interactions	ISO	RGD:1604909	6480464	[Catechin co-treated with Grape Seed Proanthocyanidins] results in increased expression of PRR27 mRNA	CTD	PMID:24763279
Prr27	Mouse	17beta-estradiol	decreases expression	ISO	RGD:1604909	6480464	Estradiol results in decreased expression of PRR27 mRNA	CTD	PMID:31614463
Prr27	Mouse	bisphenol A	decreases expression	ISO	RGD:1310384	6480464	bisphenol A results in decreased expression of PRR27 mRNA	CTD	PMID:25181051
Prr27	Mouse	fenvalerate	increases expression	ISO	RGD:1310384	6480464	fenvalerate results in increased expression of PRR27 mRNA	CTD	PMID:30307764
Prr27	Mouse	permethrin	increases expression	ISO	RGD:1604909	6480464	Permethrin results in increased expression of PRR27 mRNA	CTD	PMID:37047231
Prr27	Mouse	valproic acid	decreases methylation	ISO	RGD:1604909	6480464	Valproic Acid results in decreased methylation of PRR27 gene	CTD	PMID:29154799

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Prr27	Mouse	biological_process	involved_in	ND		2290270		MGI	GO_REF:0000015

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Prr27	Mouse	molecular_function	enables	ND		2290270		MGI	GO_REF:0000015

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:12477932	PMID:13679022	PMID:16141072	PMID:16141073	PMID:21267068	PMID:21677750	PMID:24194600
PMID:38355793

Prr27
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	87,973,556 - 87,994,245 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	87,973,545 - 87,994,246 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	87,825,697 - 87,846,386 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	87,825,686 - 87,846,387 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	88,254,722 - 88,275,411 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	88,900,258 - 88,920,947 (+)	NCBI		MGSCv36	mm8
MGSCv36	5	87,430,096 - 87,450,785 (+)	NCBI		MGSCv36	mm8
Cytogenetic Map	5	E1	NCBI
cM Map	5	43.56	NCBI

PRR27
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	70,154,237 - 70,166,609 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	70,133,616 - 70,176,799 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	71,019,954 - 71,032,326 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	71,054,493 - 71,066,915 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	4	68,377,867 - 68,390,293 (+)	NCBI		Celera
Cytogenetic Map	4	q13.3	NCBI
HuRef	4	66,822,148 - 66,834,583 (+)	NCBI		HuRef
CHM1_1	4	71,056,306 - 71,068,725 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	4	73,493,513 - 73,505,908 (+)	NCBI		T2T-CHM13v2.0

Prr27
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	20,511,998 - 20,527,861 (-)	NCBI		GRCr8
mRatBN7.2	14	20,232,757 - 20,248,617 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	20,232,758 - 20,248,595 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	14	21,882,454 - 21,898,651 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	21,882,456 - 21,898,284 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	21,797,530 - 21,813,398 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	21,755,854 - 21,764,725 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	21,755,853 - 21,771,524 (-)	NCBI
Celera	14	19,635,518 - 19,651,726 (-)	NCBI		Celera
Cytogenetic Map	14	p21	NCBI

PRR27
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	59,915,874 - 59,928,207 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	60,112,418 - 60,124,770 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	54,056,783 - 54,071,269 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	60,403,145 - 60,412,691 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	60,405,302 - 60,412,502 (-)	Ensembl	panpan1.1		panPan2

PRR27
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	13	59,540,017 - 59,555,218 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	13	59,540,011 - 59,555,213 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	13	59,266,846 - 59,282,040 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	13	60,334,402 - 60,349,574 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	13	59,948,594 - 59,963,780 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	13	59,453,105 - 59,468,352 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	13	60,600,002 - 60,615,185 (+)	NCBI		UU_Cfam_GSD_1.0

Prr27
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	16,023,875 - 16,028,880 (-)	NCBI		HiC_Itri_2

PRR27
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	8	67,023,892 - 67,028,934 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	148,327,808 - 148,347,301 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PRR27
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	18,617,731 - 18,640,986 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	18,631,892 - 18,636,387 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666084	4,293,186 - 4,299,565 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants in Prr27
1219 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	16
Count of miRNA genes:	8
Interacting mature miRNAs:	8
Transcripts:	ENSMUST00000002310, ENSMUST00000101056
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4140990	Lgq6_m	late growth QTL 6 (mouse)			Not determined			32133234	100777931	Mouse
1301010	ahl2_m	age related hearing loss 2 (mouse)			Not determined		5	62650568	96650688	Mouse
1301399	Cpfd3_m	cerebellum pattern fissures (mouse)			Not determined		5	87386871	121387065	Mouse
12910784	Pwgrq15_m	post-weaning growth rate QTL 15 (mouse)					5	77175823	97658215	Mouse
1301524	Lmb2_m	lupus in MRL and B6 F2 cross (mouse)			Not determined		5	37581488	112465722	Mouse
25314315	Mlh1fc4_m	MLH1 foci count 4 (mouse)					5	74460661	132528839	Mouse
10045972	Tir5_m	trypanosome infection response 5 (mouse)			Not determined		5	63705442	104387065	Mouse
1301126	Bwem1_m	body weight day 30 males 1 (mouse)			Not determined		5	87386871	121387065	Mouse
4141219	W10q16_m	weight 10 weeks QTL 16 (mouse)			Not determined			32133234	100777931	Mouse
10043962	Obq27_m	obesity QTL 27 (mouse)			Not determined		5	56285655	90285655	Mouse
12910816	Ogrq2_m	overall growth rate QTL 2 (mouse)					5	77175823	97658215	Mouse
1301691	Cdcs10_m	cytokine deficiency colitis susceptibility 10 (mouse)			Not determined		5	76280786	110280917	Mouse
11041665	Lmr24_m	leishmaniasis resistance 24 (mouse)					5	52694462	107321041	Mouse
12738408	Lfibq5_m	liver fibrosis QTL 5 (mouse)					5	84783853	89966041	Mouse
10043958	Chldq12_m	cholesterol and HDL QTL 12 (mouse)			Not determined		5	87386871	121387065	Mouse
26884395	Humsd2_m	humerus midshaft diameter 2, 10 week (mouse)					5	70057343	132528839	Mouse
11252124	Modvl6_m	modifier of vacuolated lens 6 (mouse)					5	62650568	96650688	Mouse
1301419	Cypr3_m	cytokine production 3 (mouse)			Not determined		5	81019649	115019803	Mouse
11341716	Rvfs3_m	Rift Valley fever susceptibility 3 (mouse)					5	26441234	138455402	Mouse
13506928	Recrq8_m	recombination rate in male meiosis QTL 8 (mouse)					5	74460661	132528839	Mouse
1301843	Listr1_m	listeriosis resistance 1 (mouse)			Not determined		5	60246081	94246203	Mouse
10043993	Hbnr10_m	Heligmosomoides bakeri nematode resistance 10 (mouse)			Not determined		5	72418876	106419011	Mouse
27226719	Tibw6_m	tibia width 6, proximal, 16 week (mouse)					5	72857343	139985755	Mouse
10401246	Bglu13_m	blood glucose level 13 (mouse)			Not determined		5	79539640	113539786	Mouse
4141438	Skmw13_m	skeletal muscle weight 13 (mouse)			Not determined		5	76190263	110190479	Mouse
1301713	Dbsty2_m	diabesity 2 (mouse)			Not determined		5	76445064	110445225	Mouse
11041899	Lmr24a_m	leishmaniasis resistance 24a (mouse)					5	52694462	107321041	Mouse
10401245	Bglu18_m	blood glucose level 18 (mouse)			Not determined		5	82838468	116838597	Mouse
4142064	Tmc1m4_m	Tmc1 modifier 4 (mouse)			Not determined		5	54500177	127001072	Mouse
1300931	Cocrb6_m	cocaine related behavior 6 (mouse)			Not determined		5	76445064	110445225	Mouse
4142317	Rgcs1_m	retinal ganglion cell susceptible 1 (mouse)			Not determined			55388334	108762627	Mouse
1300801	Drb2_m	dopamine receptor binding 2 (mouse)			Not determined		5	87386871	121387065	Mouse
1301829	Thyls2_m	thymic lymphoma susceptibility 2 (mouse)			Not determined		5	76445064	110445225	Mouse
12904740	M1fscn2_m	modifier 1 of Fscn2 (mouse)					5	66529661	100529661	Mouse
10755524	Mono1_m	monocyte differential 1 (mouse)					5	80849259	114849259	Mouse
4142428	Modvl1_m	modifier of vacuolated lens 1 (mouse)			Not determined			62650568	96650688	Mouse
1357431	Cia27_m	collagen induced arthritis 27 (mouse)			Not determined		5	75315348	120018629	Mouse
11040589	Lmr3a_m	leishmaniasis resistance 3a (mouse)					5	59602801	93602980	Mouse
11040590	Lmr3b_m	leishmaniasis resistance 3b (mouse)					5	59602801	93602980	Mouse
11040591	Lmr3c_m	leishmaniasis resistance 3c (mouse)					5	59602801	93602980	Mouse
12904739	M2fscn2_m	modifier 2 of FSCN2 (mouse)					5	66529661	100529661	Mouse
1301243	Bmd2_m	bone mineral density 2 (mouse)			Not determined		5	55388334	100455525	Mouse
1300986	Hdlq2_m	HDL QTL 2 (mouse)			Not determined		5	76280786	110280917	Mouse
11049560	Lmr24d_m	leishmaniasis resistance 24d (mouse)					5	64374877	98374996	Mouse
13464249	Ahl16_m	age related hearing loss, early onset 16 (mouse)					5	76445064	110445225	Mouse
13464248	Ahl13_m	age related hearing loss, early onset 13 (mouse)					5	55645874	89645995	Mouse
13464250	Ahl15_m	age related hearing loss, early onset 15 (mouse)					5	62650568	96650688	Mouse
11040592	Lmr3d_m	leishmaniasis resistance 3d (mouse)					5	59602801	93602980	Mouse
13464247	Ahl14_m	age related hearing loss, early onset 14 (mouse)					5	60403062	94403160	Mouse
4141124	Dshv2_m	dorsal hippocampal volume 2 (mouse)			Not determined		5	75315348	98019803	Mouse
10044005	Ahl7_m	age related hearing loss 7 (mouse)			Not determined		5	58330502	92330641	Mouse
13464241	Ahl18_m	age related hearing loss, early onset 18 (mouse)					5	87386871	121387065	Mouse
4141505	Chlq14_m	circulating hormone level QTL 14 (mouse)			Not determined		5	76280786	110280917	Mouse
13464242	Ahl17_m	age related hearing loss, early onset 17 (mouse)					5	82838468	116838597	Mouse

AW987150

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	5	87,824,239 - 87,824,375	UniSTS	GRCm38
MGSCv37	5	88,253,264 - 88,253,400	UniSTS	GRCm37
Cytogenetic Map	5	E2	UniSTS
Cytogenetic Map	5	E1	UniSTS
cM Map	5	44.95	UniSTS
cM Map	5	44.94	UniSTS
Whitehead/MRC_RH	5	1110.17	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	NM_001163551	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_028648	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC022298	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC074046	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK015291	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC049645	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC103787	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY446468	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY714849	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000002310 ⟹ ENSMUSP00000002310

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	87,973,545 - 87,994,246 (+)	Ensembl
GRCm38.p6 Ensembl	5	87,825,686 - 87,846,387 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000101056 ⟹ ENSMUSP00000098617

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	5	87,973,545 - 87,994,246 (+)	Ensembl
GRCm38.p6 Ensembl	5	87,825,686 - 87,846,387 (+)	Ensembl

RefSeq Acc Id:

NM_001163551 ⟹ NP_001157023

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	5	87,973,556 - 87,994,245 (+)	NCBI
GRCm38	5	87,825,697 - 87,846,386 (+)	ENTREZGENE
MGSCv37	5	88,254,722 - 88,275,411 (+)	RGD
cM Map	5		ENTREZGENE

Sequence:

show sequence

ATTCTGTCTGTTGTATTCTCTGGTGGCCTCACTTCTCCCAGACTTTATCCTTCGTAATTTAAAATATTATCCTCATACTTAATACAATTCTTCTGCCTTTCTACGCTGAAGCAACTCTCCCTGGACAA
TATCTGGCCATGTAAGACTCTGAAATGAATGTTGACTTCTGTTCCGTTCTAAGCCTCTGAGTCTCGAAGCTTCATCAAAATGAAGTTACTTCTTTGGGCCTGCATCATGTGTGTCGCTTTTGCAAAGA
GGAGACGTTATCCTTTCATTCATAAGAAATCACCCTCGTCCACTGAAGAGGATTACTTTGGAAATCGCTACCCACTTAATCCATCTCTGAATATCCCGTTTGGCCTATGGAATGATAATTTGCCACCT
TTTCTTTTGCCTCCTTTTAACACTCAACAAGGAAACACCATCACCAAATTCCCTGGAAGTTCTGAACTTGAAAAAGGGTTATCTCTATATCCTTGGATTGCCACTCCTTCTAAACTTCGCTATGTATA
CCAAAGTCTCAACTACCCAGCTGATGCTCCATTGAATGGTCCCCCAGTCGCCCCTCTTCCTCCTCCCAAACACTTTCCTCCCAGGCCATACCCCTTTGTCATACCTCCAAAGATTTCTGTCATCTCAC
CTGTTAGACCTGAGCCCGTAGCAGTTCCTGCTATGCCTGCTGAAGGTGAGGGTCTGGTACCTGAGTTCCCTGTAGACAAACCTATTTTAGGTCTGCCTCAGGCAGTCAAACTTGGAACACCCGTGCCA
CCCTCCGGACCCAAACCTCTTGCACCCGAACCTGCTCCATCCCCGTTTGGTGCACCTGAGCCTGCCCCAGTCCAGTTTGGTGCACCTGAGCCTGCCCCCCACCAGTTAGAGGCAGCTGTCCCTGATGC
ATCCCGCCTCATGGCACCTGAACCCGCTGTACCCTTGTCTGTGGGAGCACAGTCACTAGCTGAATCCCCTGCAGGCCTGTCTCCCGAAAACAAACCTACTTCAGGTGAGCCTGCTGCAACACAGTCTC
TGCCAGCCTTGCCTGCTGCAGGCCTGGCTGTTGAAGCCAAGCTTCCTGCAGCAGAATCTGCTGCAGGCCGACCTCCTCCAGCTGAACTTATGGCGAGCCAGTCTGTTGTGGGAAAACTTATTACAGCT
GAGCCTACTGAAGCAAAACCACAGGTACTTGAGCCTGTTGAGGCCAAATCTGCCAGCCAAGAAGCACAGCCTTTTTTTTACCAGGTGCCAATGAACAAACCAAAAGAAATCTAAATTTTTTCTCTTTT
CTCAACAAATAGTTTATATGTTTTATTAAAACTATTAGTCTATCC

hide sequence

RefSeq Acc Id:

NM_028648 ⟹ NP_082924

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	5	87,973,556 - 87,994,245 (+)	NCBI
GRCm38	5	87,825,697 - 87,846,386 (+)	ENTREZGENE
MGSCv37	5	88,254,722 - 88,275,411 (+)	RGD
cM Map	5		ENTREZGENE

Sequence:

show sequence

ATTCTGTCTGTTGTATTCTCTGGTGGCCTCACTTCTCCCAGACTTTATCCTTCGTAATTTAAAA
TATTATCCTCATACTTAATACAATTCTTCTGCCTTTCTACGCTGAAGCAACTCTCCCTGGACAATATCTGGCCATGTAAGACTCTGAAATGAATGTTGACTTCTGTTCCGTTCTAAGCCTCTGAGTCT
CGAAGCTTCATCAAAATGAAGTTACTTCTTTGGGCCTGCATCATGTGTGTCGCTTTTGCAAAGAGGAAATCACCCTCGTCCACTGAAGAGGATTACTTTGGAAATCGCTACCCACTTAATCCATCTCT
GAATATCCCGTTTGGCCTATGGAATGATAATTTGCCACCTTTTCTTTTGCCTCCTTTTAACACTCAACAAGGAAACACCATCACCAAATTCCCTGGAAGTTCTGAACTTGAAAAAGGGTTATCTCTAT
ATCCTTGGATTGCCACTCCTTCTAAACTTCGCTATGTATACCAAAGTCTCAACTACCCAGCTGATGCTCCATTGAATGGTCCCCCAGTCGCCCCTCTTCCTCCTCCCAAACACTTTCCTCCCAGGCCA
TACCCCTTTGTCATACCTCCAAAGATTTCTGTCATCTCACCTGTTAGACCTGAGCCCGTAGCAGTTCCTGCTATGCCTGCTGAAGGTGAGGGTCTGGTACCTGAGTTCCCTGTAGACAAACCTATTTT
AGGTCTGCCTCAGGCAGTCAAACTTGGAACACCCGTGCCACCCTCCGGACCCAAACCTCTTGCACCCGAACCTGCTCCATCCCCGTTTGGTGCACCTGAGCCTGCCCCAGTCCAGTTTGGTGCACCTG
AGCCTGCCCCCCACCAGTTAGAGGCAGCTGTCCCTGATGCATCCCGCCTCATGGCACCTGAACCCGCTGTACCCTTGTCTGTGGGAGCACAGTCACTAGCTGAATCCCCTGCAGGCCTGTCTCCCGAA
AACAAACCTACTTCAGGTGAGCCTGCTGCAACACAGTCTCTGCCAGCCTTGCCTGCTGCAGGCCTGGCTGTTGAAGCCAAGCTTCCTGCAGCAGAATCTGCTGCAGGCCGACCTCCTCCAGCTGAACT
TATGGCGAGCCAGTCTGTTGTGGGAAAACTTATTACAGCTGAGCCTACTGAAGCAAAACCACAGGTACTTGAGCCTGTTGAGGCCAAATCTGCCAGCCAAGAAGCACAGCCTTTTTTTTACCAGGTGC
CAATGAACAAACCAAAAGAAATCTAAATTTTTTCTCTTTTCTCAACAAATAGTTTATATGTTTTATTAAAACTATTAGTCTATCC

hide sequence


Protein RefSeqs	NP_001157023	(Get FASTA)	NCBI Sequence Viewer
	NP_082924	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI03788	(Get FASTA)	NCBI Sequence Viewer
	BAB29782	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000002310
	ENSMUSP00000002310.7
	ENSMUSP00000098617
	ENSMUSP00000098617.2

RefSeq Acc Id:	NP_082924 ⟸ NM_028648
- Peptide Label:	isoform 2 precursor
- UniProtKB:	E9Q591 (UniProtKB/TrEMBL), Q9D5J3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKLLLWACIMCVAFAKRKSPSSTEEDYFGNRYPLNPSLNIPFGLWNDNLPPFLLPPFNTQQGNTITKFPGSSELEKGLSLYPWIATPSKLRYVYQSLNYPADAPLNGPPVAPLPPPKHFPPRPYPFVI PPKISVISPVRPEPVAVPAMPAEGEGLVPEFPVDKPILGLPQAVKLGTPVPPSGPKPLAPEPAPSPFGAPEPAPVQFGAPEPAPHQLEAAVPDASRLMAPEPAVPLSVGAQSLAESPAGLSPENKPTS GEPAATQSLPALPAAGLAVEAKLPAAESAAGRPPPAELMASQSVVGKLITAEPTEAKPQVLEPVEAKSASQEAQPFFYQVPMNKPKEI hide sequence

RefSeq Acc Id:	NP_001157023 ⟸ NM_001163551
- Peptide Label:	isoform 1 precursor
- UniProtKB:	Q3SYJ2 (UniProtKB/TrEMBL), Q9D5J3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKLLLWACIMCVAFAKRRRYPFIHKKSPSSTEEDYFGNRYPLNPSLNIPFGLWNDNLPPFLLPPFNTQQGNTITKFPGSSELEKGLSLYPWIATPSKLRYVYQSLNYPADAPLNGPPVAPLPPPKHFP PRPYPFVIPPKISVISPVRPEPVAVPAMPAEGEGLVPEFPVDKPILGLPQAVKLGTPVPPSGPKPLAPEPAPSPFGAPEPAPVQFGAPEPAPHQLEAAVPDASRLMAPEPAVPLSVGAQSLAESPAGL SPENKPTSGEPAATQSLPALPAAGLAVEAKLPAAESAAGRPPPAELMASQSVVGKLITAEPTEAKPQVLEPVEAKSASQEAQPFFYQVPMNKPKEI hide sequence

Ensembl Acc Id:

ENSMUSP00000098617 ⟸ ENSMUST00000101056

Ensembl Acc Id:

ENSMUSP00000002310 ⟸ ENSMUST00000002310

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q3SYJ2-F1-model_v2	AlphaFold	Q3SYJ2	1-352	view protein structure

RGD ID:

6887058

Promoter ID:

EPDNEW_M6980

Type:

initiation region

Name:

Prr27_1

Description:

Mus musculus proline rich 27 , transcript variant 2, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	5	87,825,697 - 87,825,757	EPDNEW

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000002240	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000002310	ENTREZGENE
	ENSMUST00000002310.8	UniProtKB/TrEMBL
	ENSMUST00000101056	ENTREZGENE
	ENSMUST00000101056.8	UniProtKB/TrEMBL
InterPro	PRR27	UniProtKB/TrEMBL
KEGG Report	mmu:73779	UniProtKB/TrEMBL
MGD	MGI:1921029	ENTREZGENE
NCBI Gene	73779	ENTREZGENE
PANTHER	PROLINE-RICH PROTEIN 27	UniProtKB/TrEMBL
	PTHR39415	UniProtKB/TrEMBL
PhenoGen	Prr27	PhenoGen
UniProt	E9Q591	ENTREZGENE, UniProtKB/TrEMBL
	Q3SYJ2	ENTREZGENE, UniProtKB/TrEMBL
	Q9D5J3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2014-03-26	Prr27	proline rich 27	4930432K09Rik	RIKEN cDNA 4930432K09 gene	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
		Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

Send us a Message