PRR27 (proline rich 27) - Rat Genome Database

Name: PRR27
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: PRR27 (proline rich 27) Pan paniscus

Analyze

Symbol:

PRR27

Name:

proline rich 27

RGD ID:

11888730

Description:

ASSOCIATED WITH genetic disease (ortholog); FOUND IN extracellular exosome (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

proline-rich protein 27

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PRR27 (proline rich 27)	NCBI	Ortholog
Mus musculus (house mouse):	Prr27 (proline rich 27)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Prr27 (proline rich 27)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PRR27 (proline rich 27)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Prr27 (proline rich 27)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PRR27 (proline rich 27)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PRR27 (proline rich 27)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	59,915,874 - 59,928,207 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	60,112,418 - 60,124,770 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	54,056,783 - 54,071,269 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	60,403,145 - 60,412,691 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	60,405,302 - 60,412,502 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

extracellular exosome (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

PRR27
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	59,915,874 - 59,928,207 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	60,112,418 - 60,124,770 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	54,056,783 - 54,071,269 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	60,403,145 - 60,412,691 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	60,405,302 - 60,412,502 (-)	Ensembl	panpan1.1		panPan2

PRR27
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	70,154,237 - 70,166,609 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	70,133,616 - 70,176,799 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	71,019,954 - 71,032,326 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	71,054,493 - 71,066,915 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	4	68,377,867 - 68,390,293 (+)	NCBI		Celera
Cytogenetic Map	4	q13.3	NCBI
HuRef	4	66,822,148 - 66,834,583 (+)	NCBI		HuRef
CHM1_1	4	71,056,306 - 71,068,725 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	4	73,493,513 - 73,505,908 (+)	NCBI		T2T-CHM13v2.0

Prr27
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	87,973,556 - 87,994,245 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	87,973,545 - 87,994,246 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	87,825,697 - 87,846,386 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	87,825,686 - 87,846,387 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	88,254,722 - 88,275,411 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	88,900,258 - 88,920,947 (+)	NCBI		MGSCv36	mm8
MGSCv36	5	87,430,096 - 87,450,785 (+)	NCBI		MGSCv36	mm8
Cytogenetic Map	5	E1	NCBI
cM Map	5	43.56	NCBI

Prr27
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	20,511,998 - 20,527,861 (-)	NCBI		GRCr8
mRatBN7.2	14	20,232,757 - 20,248,617 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	20,232,758 - 20,248,595 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	14	21,882,454 - 21,898,651 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	21,882,456 - 21,898,284 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	21,797,530 - 21,813,398 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	21,755,854 - 21,764,725 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	21,755,853 - 21,771,524 (-)	NCBI
Celera	14	19,635,518 - 19,651,726 (-)	NCBI		Celera
Cytogenetic Map	14	p21	NCBI

PRR27
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	13	59,540,017 - 59,555,218 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	13	59,540,011 - 59,555,213 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	13	59,266,846 - 59,282,040 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	13	60,334,402 - 60,349,574 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	13	59,948,594 - 59,963,780 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	13	59,453,105 - 59,468,352 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	13	60,600,002 - 60,615,185 (+)	NCBI		UU_Cfam_GSD_1.0

Prr27
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	16,023,875 - 16,028,880 (-)	NCBI		HiC_Itri_2

PRR27
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	8	67,023,892 - 67,028,934 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	148,327,808 - 148,347,301 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PRR27
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	18,617,731 - 18,640,986 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	18,631,892 - 18,636,387 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666084	4,293,186 - 4,299,565 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_034958692	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034958693	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_057302244	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000056330 ⟹ ENSPPAP00000033455

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	4	60,405,302 - 60,412,502 (-)	Ensembl

RefSeq Acc Id:

XM_057302244 ⟹ XP_057158227

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	3	59,915,874 - 59,928,207 (-)	NCBI
NHGRI_mPanPan1	4	60,112,418 - 60,124,770 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_057158227	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000033455.1

RefSeq Acc Id:

ENSPPAP00000033455 ⟸ ENSPPAT00000056330

RefSeq Acc Id:

XP_057158227 ⟸ XM_057302244

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000039588	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000056330.1	UniProtKB/TrEMBL
InterPro	PRR27	UniProtKB/TrEMBL
NCBI Gene	PRR27	ENTREZGENE
PANTHER	PROLINE-RICH PROTEIN 27	UniProtKB/TrEMBL
	PTHR39415	UniProtKB/TrEMBL
UniProt	A0A2R9BY98_PANPA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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