CNOT4 (CCR4-NOT transcription complex subunit 4) - Rat Genome Database

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Gene: CNOT4 (CCR4-NOT transcription complex subunit 4) Homo sapiens
Analyze
Symbol: CNOT4
Name: CCR4-NOT transcription complex subunit 4
RGD ID: 1321153
HGNC Page HGNC:7880
Description: Enables ubiquitin-protein transferase activity. Involved in protein autoubiquitination; regulation of megakaryocyte differentiation; and ubiquitin-dependent protein catabolic process. Located in CCR4-NOT complex.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: CCR4-associated factor 4; CCR4-NOT transcription complex, subunit 4; CLONE243; E3 ubiquitin-protein ligase CNOT4; NOT4; NOT4 (negative regulator of transcription 4, yeast) homolog; NOT4H; potential transcriptional repressor NOT4Hp; RING-type E3 ubiquitin transferase CNOT4
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: CNOT4P1  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387135,361,795 - 135,510,102 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7135,361,795 - 135,510,145 (-)EnsemblGRCh38hg38GRCh38
GRCh377135,046,547 - 135,194,850 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367134,697,089 - 134,845,391 (-)NCBINCBI36Build 36hg18NCBI36
Build 347134,503,807 - 134,652,106NCBI
Celera7129,783,984 - 129,932,315 (-)NCBICelera
Cytogenetic Map7q33NCBI
HuRef7129,349,392 - 129,497,731 (-)NCBIHuRef
CHM1_17134,980,486 - 135,128,729 (-)NCBICHM1_1
T2T-CHM13v2.07136,669,704 - 136,817,325 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27134,390,899 - 134,539,206 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
CCR4-NOT complex  (IBA,IDA,IEA,NAS)
cytoplasm  (IEA)
cytosol  (TAS)
nucleus  (IEA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10637334   PMID:11087754   PMID:11823428   PMID:12107410   PMID:12477932   PMID:14702039   PMID:15001359   PMID:15062086   PMID:15489334   PMID:16344560   PMID:16365295   PMID:18029348  
PMID:18533727   PMID:19322201   PMID:19346402   PMID:19558367   PMID:19690564   PMID:20379614   PMID:21873635   PMID:21988832   PMID:22159038   PMID:22681889   PMID:25663449   PMID:25933433  
PMID:25963833   PMID:26575292   PMID:26673895   PMID:28536288   PMID:28718761   PMID:29395067   PMID:29509190   PMID:29802328   PMID:29861391   PMID:30692204   PMID:30737378   PMID:31320642  
PMID:32296183   PMID:32460013   PMID:33034149   PMID:33277362   PMID:33451139   PMID:33592572   PMID:33961781   PMID:34108663   PMID:34133714   PMID:34626022   PMID:35256949   PMID:35559673  
PMID:35803934   PMID:35819319   PMID:35831314   PMID:36828627   PMID:36931259   PMID:37005481   PMID:37493105   PMID:37689310   PMID:37794589   PMID:38360978   PMID:38777146   PMID:39098523  


Genomics

Comparative Map Data
CNOT4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387135,361,795 - 135,510,102 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7135,361,795 - 135,510,145 (-)EnsemblGRCh38hg38GRCh38
GRCh377135,046,547 - 135,194,850 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367134,697,089 - 134,845,391 (-)NCBINCBI36Build 36hg18NCBI36
Build 347134,503,807 - 134,652,106NCBI
Celera7129,783,984 - 129,932,315 (-)NCBICelera
Cytogenetic Map7q33NCBI
HuRef7129,349,392 - 129,497,731 (-)NCBIHuRef
CHM1_17134,980,486 - 135,128,729 (-)NCBICHM1_1
T2T-CHM13v2.07136,669,704 - 136,817,325 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27134,390,899 - 134,539,206 (-)NCBI
Cnot4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39634,999,000 - 35,110,646 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl634,999,000 - 35,110,659 (-)EnsemblGRCm39 Ensembl
GRCm38635,022,065 - 35,133,754 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl635,022,065 - 35,133,724 (-)EnsemblGRCm38mm10GRCm38
MGSCv37634,972,065 - 35,083,737 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36634,975,328 - 35,063,867 (-)NCBIMGSCv36mm8
Celera635,022,503 - 35,134,275 (-)NCBICelera
Cytogenetic Map6B1NCBI
cM Map615.2NCBI
Cnot4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8464,679,903 - 64,781,432 (-)NCBIGRCr8
mRatBN7.2463,712,770 - 63,814,355 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl463,712,770 - 63,814,360 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx468,670,159 - 68,772,137 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0464,585,781 - 64,687,763 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0462,988,285 - 63,090,269 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0462,561,443 - 62,663,225 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl462,561,444 - 62,663,200 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0462,288,219 - 62,389,530 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4462,437,688 - 62,548,524 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1462,713,823 - 62,824,684 (-)NCBI
Celera458,760,849 - 58,862,549 (-)NCBICelera
Cytogenetic Map4q22NCBI
Cnot4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554947,248,531 - 7,308,346 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554947,190,361 - 7,306,298 (+)NCBIChiLan1.0ChiLan1.0
CNOT4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26172,183,106 - 172,332,742 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1724,193,359 - 24,343,008 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07127,327,092 - 127,475,213 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17139,828,828 - 139,975,948 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7139,828,828 - 139,905,285 (-)Ensemblpanpan1.1panPan2
CNOT4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11612,723,243 - 12,860,851 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1612,723,346 - 12,859,077 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1613,734,951 - 13,871,784 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01612,702,062 - 12,839,200 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1612,702,085 - 12,839,870 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11613,144,566 - 13,282,337 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01612,244,411 - 12,381,223 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01612,383,220 - 12,520,057 (+)NCBIUU_Cfam_GSD_1.0
Cnot4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511818,898,676 - 19,024,237 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936592195,558 - 321,145 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936592195,566 - 321,131 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CNOT4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1813,821,575 - 13,980,529 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11813,821,573 - 13,980,533 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21814,695,764 - 14,741,710 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CNOT4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121104,047,184 - 104,188,241 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21104,047,034 - 104,188,270 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666072949,794 - 1,090,172 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cnot4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476515,658,333 - 15,722,901 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476515,658,353 - 15,798,478 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CNOT4
24 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 7q32.1-36.3(chr7:129310166-159282390)x3 copy number gain See cases [RCV000050876] Chr7:129310166..159282390 [GRCh38]
Chr7:128950007..159075079 [GRCh37]
Chr7:128737243..158767840 [NCBI36]
Chr7:7q32.1-36.3		 pathogenic
GRCh38/hg38 7q32.3-36.3(chr7:132850196-159325876)x3 copy number gain See cases [RCV000051101] Chr7:132850196..159325876 [GRCh38]
Chr7:132534956..159118566 [GRCh37]
Chr7:132185496..158811327 [NCBI36]
Chr7:7q32.3-36.3		 pathogenic
GRCh38/hg38 7p22.3-q36.3(chr7:53985-159282531)x1 copy number loss See cases [RCV000052250] Chr7:53985..159282531 [GRCh38]
Chr7:53985..159075220 [GRCh37]
Chr7:149068..158767981 [NCBI36]
Chr7:7p22.3-q36.3		 pathogenic
GRCh38/hg38 7q32.3-36.1(chr7:132023155-149309794)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000054172]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000054172]|See cases [RCV000054172] Chr7:132023155..149309794 [GRCh38]
Chr7:131707914..149006885 [GRCh37]
Chr7:131358454..148637818 [NCBI36]
Chr7:7q32.3-36.1		 pathogenic
GRCh38/hg38 7q33-35(chr7:135414108-144140219)x1 copy number loss See cases [RCV000054173] Chr7:135414108..144140219 [GRCh38]
Chr7:135098857..143837312 [GRCh37]
Chr7:134749397..143468245 [NCBI36]
Chr7:7q33-35		 pathogenic
NM_001008225.2(CNOT4):c.-92-8056T>G single nucleotide variant Lung cancer [RCV000105639] Chr7:135446479 [GRCh38]
Chr7:135131227 [GRCh37]
Chr7:7q33		 uncertain significance
GRCh38/hg38 7p22.3-q36.3(chr7:54185-159282390)x1 copy number loss See cases [RCV000135401] Chr7:54185..159282390 [GRCh38]
Chr7:54185..159075079 [GRCh37]
Chr7:149268..158767840 [NCBI36]
Chr7:7p22.3-q36.3		 pathogenic
GRCh38/hg38 7q33(chr7:135360779-135634426)x3 copy number gain See cases [RCV000135163] Chr7:135360779..135634426 [GRCh38]
Chr7:135045531..135319174 [GRCh37]
Chr7:134696071..134969714 [NCBI36]
Chr7:7q33		 likely benign
GRCh38/hg38 7q21.3-36.3(chr7:97419852-158923762)x3 copy number gain See cases [RCV000136717] Chr7:97419852..158923762 [GRCh38]
Chr7:97049164..158716453 [GRCh37]
Chr7:96887100..158409214 [NCBI36]
Chr7:7q21.3-36.3		 pathogenic
GRCh38/hg38 7q33-36.3(chr7:134666829-158591882)x1 copy number loss See cases [RCV000138120] Chr7:134666829..158591882 [GRCh38]
Chr7:134351581..158384574 [GRCh37]
Chr7:134002121..158077335 [NCBI36]
Chr7:7q33-36.3		 pathogenic
GRCh38/hg38 7q31.32-36.3(chr7:121863759-159335865)x3 copy number gain See cases [RCV000138847] Chr7:121863759..159335865 [GRCh38]
Chr7:121503813..159128555 [GRCh37]
Chr7:121291049..158821316 [NCBI36]
Chr7:7q31.32-36.3		 pathogenic
GRCh38/hg38 7q33-36.1(chr7:135017687-148807400)x1 copy number loss See cases [RCV000138903] Chr7:135017687..148807400 [GRCh38]
Chr7:134702438..148504492 [GRCh37]
Chr7:134352978..148135425 [NCBI36]
Chr7:7q33-36.1		 pathogenic
GRCh38/hg38 7q32.3-36.3(chr7:132444095-159335866)x3 copy number gain See cases [RCV000139654] Chr7:132444095..159335866 [GRCh38]
Chr7:132128854..159128556 [GRCh37]
Chr7:131779394..158821317 [NCBI36]
Chr7:7q32.3-36.3		 pathogenic
GRCh38/hg38 7q31.2-36.3(chr7:115459015-159325817)x3 copy number gain See cases [RCV000141413] Chr7:115459015..159325817 [GRCh38]
Chr7:115099069..159118507 [GRCh37]
Chr7:114886305..158811268 [NCBI36]
Chr7:7q31.2-36.3		 pathogenic
GRCh38/hg38 7q32.3-36.3(chr7:131228764-159335866)x3 copy number gain See cases [RCV000142802] Chr7:131228764..159335866 [GRCh38]
Chr7:130913523..159128556 [GRCh37]
Chr7:130564063..158821317 [NCBI36]
Chr7:7q32.3-36.3		 pathogenic
GRCh38/hg38 7q32.3-36.3(chr7:131171478-159327017)x3 copy number gain See cases [RCV000143754] Chr7:131171478..159327017 [GRCh38]
Chr7:130856237..159119707 [GRCh37]
Chr7:130506777..158812468 [NCBI36]
Chr7:7q32.3-36.3		 pathogenic
GRCh38/hg38 7q32.3-36.3(chr7:132438072-159327017)x3 copy number gain See cases [RCV000143707] Chr7:132438072..159327017 [GRCh38]
Chr7:132122831..159119707 [GRCh37]
Chr7:131773371..158812468 [NCBI36]
Chr7:7q32.3-36.3		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:43360-159119707)x1 copy number loss See cases [RCV000446044] Chr7:43360..159119707 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
TMEM106B-BRAF fusion deletion Pleomorphic xanthoastrocytoma [RCV000454357] Chr7:12258147..140494267 [GRCh37]
Chr7:7p21.3-q34		 pathogenic
GRCh37/hg19 7q22.1-36.3(chr7:98969247-159119707)x3 copy number gain See cases [RCV000447709] Chr7:98969247..159119707 [GRCh37]
Chr7:7q22.1-36.3		 pathogenic
GRCh37/hg19 7q32.3-34(chr7:131642114-139107211)x1 copy number loss See cases [RCV000448552] Chr7:131642114..139107211 [GRCh37]
Chr7:7q32.3-34		 pathogenic
GRCh37/hg19 7q33-36.3(chr7:133799185-159119707)x1 copy number loss See cases [RCV000448836] Chr7:133799185..159119707 [GRCh37]
Chr7:7q33-36.3		 pathogenic
GRCh37/hg19 7q32.1-34(chr7:127295698-139524358)x1 copy number loss See cases [RCV000447722] Chr7:127295698..139524358 [GRCh37]
Chr7:7q32.1-34		 pathogenic
GRCh37/hg19 7q32.1-36.3(chr7:128276078-159119707)x3 copy number gain See cases [RCV000447956] Chr7:128276078..159119707 [GRCh37]
Chr7:7q32.1-36.3		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:43361-159119707) copy number gain See cases [RCV000510686] Chr7:43361..159119707 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:43361-159119707)x3 copy number gain See cases [RCV000511549] Chr7:43361..159119707 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh37/hg19 7q33(chr7:134379624-135927947)x3 copy number gain See cases [RCV000511199] Chr7:134379624..135927947 [GRCh37]
Chr7:7q33		 uncertain significance
GRCh37/hg19 7q32.1-36.3(chr7:128312450-159119220) copy number gain not provided [RCV000767558] Chr7:128312450..159119220 [GRCh37]
Chr7:7q32.1-36.3		 pathogenic
NM_001190850.2(CNOT4):c.1874C>G (p.Ser625Cys) single nucleotide variant not specified [RCV004294549] Chr7:135363153 [GRCh38]
Chr7:135047905 [GRCh37]
Chr7:7q33		 uncertain significance
GRCh37/hg19 7q22.1-36.3(chr7:98693388-159119707)x3 copy number gain not provided [RCV000682911] Chr7:98693388..159119707 [GRCh37]
Chr7:7q22.1-36.3		 pathogenic
GRCh37/hg19 7q33(chr7:133230189-137972605)x1 copy number loss not provided [RCV000682906] Chr7:133230189..137972605 [GRCh37]
Chr7:7q33		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:44935-159126310)x3 copy number gain not provided [RCV000746280] Chr7:44935..159126310 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
Single allele complex Renal transitional cell carcinoma [RCV000754611] Chr7:129367205..140482957 [GRCh37]
Chr7:7q32.2-34		 likely pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:10704-159122532)x3 copy number gain not provided [RCV000746278] Chr7:10704..159122532 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:10365-159119707)x3 copy number gain not provided [RCV000848126] Chr7:10365..159119707 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh37/hg19 7q33(chr7:135035582-135130700)x1 copy number loss not provided [RCV000846083] Chr7:135035582..135130700 [GRCh37]
Chr7:7q33		 uncertain significance
GRCh37/hg19 7q32.3-36.3(chr7:131414604-159126310)x1 copy number loss See cases [RCV001007432] Chr7:131414604..159126310 [GRCh37]
Chr7:7q32.3-36.3		 pathogenic
GRCh37/hg19 7q33(chr7:134648448-137942208)x1 copy number loss not provided [RCV000849809] Chr7:134648448..137942208 [GRCh37]
Chr7:7q33		 uncertain significance
GRCh37/hg19 7q32.3-36.3(chr7:130592554-159119707)x3 copy number gain not provided [RCV000849569] Chr7:130592554..159119707 [GRCh37]
Chr7:7q32.3-36.3		 pathogenic
GRCh37/hg19 7q31.1-36.3(chr7:109251060-159119707)x3 copy number gain not provided [RCV001005994] Chr7:109251060..159119707 [GRCh37]
Chr7:7q31.1-36.3		 pathogenic
Single allele complex Ring chromosome 7 [RCV002280646] Chr7:43360..159119707 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh37/hg19 7q33-35(chr7:133848099-145814115)x1 copy number loss Hypertelorism [RCV001801200] Chr7:133848099..145814115 [GRCh37]
Chr7:7q33-35		 pathogenic
GRCh37/hg19 7q33-36.3(chr7:133851002-159119707)x3 copy number gain not provided [RCV001834520] Chr7:133851002..159119707 [GRCh37]
Chr7:7q33-36.3		 pathogenic
GRCh37/hg19 7q32.1-34(chr7:127295698-139524358) copy number loss not specified [RCV002053727] Chr7:127295698..139524358 [GRCh37]
Chr7:7q32.1-34		 pathogenic
NC_000007.13:g.(?_130781014)_(150301047_?)del deletion not provided [RCV003116360] Chr7:130781014..150301047 [GRCh37]
Chr7:7q32.3-36.1		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:56604613-96692931)x1 copy number loss See cases [RCV002287832] Chr7:56604613..96692931 [GRCh37]
Chr7:7p22.3-q36.3		 uncertain significance
NM_001190850.2(CNOT4):c.2005G>A (p.Ala669Thr) single nucleotide variant not specified [RCV004312327] Chr7:135363022 [GRCh38]
Chr7:135047774 [GRCh37]
Chr7:7q33		 uncertain significance
NM_001190850.2(CNOT4):c.956A>G (p.Asn319Ser) single nucleotide variant not specified [RCV004314355] Chr7:135395807 [GRCh38]
Chr7:135080559 [GRCh37]
Chr7:7q33		 uncertain significance
GRCh37/hg19 7q32.3-36.1(chr7:131779213-149042734)x1 copy number loss not provided [RCV002472560] Chr7:131779213..149042734 [GRCh37]
Chr7:7q32.3-36.1		 pathogenic
NM_001190850.2(CNOT4):c.2063C>A (p.Pro688Gln) single nucleotide variant not specified [RCV004094538] Chr7:135362964 [GRCh38]
Chr7:135047716 [GRCh37]
Chr7:7q33		 uncertain significance
NM_001190850.2(CNOT4):c.1520G>C (p.Ser507Thr) single nucleotide variant not specified [RCV004209994] Chr7:135394025 [GRCh38]
Chr7:135078777 [GRCh37]
Chr7:7q33		 uncertain significance
NM_001190850.2(CNOT4):c.1789A>G (p.Ser597Gly) single nucleotide variant not specified [RCV004128924] Chr7:135363905 [GRCh38]
Chr7:135048657 [GRCh37]
Chr7:7q33		 uncertain significance
NM_001190850.2(CNOT4):c.2039C>T (p.Pro680Leu) single nucleotide variant not specified [RCV004130360] Chr7:135362988 [GRCh38]
Chr7:135047740 [GRCh37]
Chr7:7q33		 uncertain significance
NM_001190850.2(CNOT4):c.1285C>G (p.Pro429Ala) single nucleotide variant not specified [RCV004092893] Chr7:135394260 [GRCh38]
Chr7:135079012 [GRCh37]
Chr7:7q33		 uncertain significance
GRCh37/hg19 7q31.31-33(chr7:120582003-137699953)x1 copy number loss not specified [RCV003986721] Chr7:120582003..137699953 [GRCh37]
Chr7:7q31.31-33		 pathogenic
NM_001190850.2(CNOT4):c.1469G>A (p.Ser490Asn) single nucleotide variant not specified [RCV004441993] Chr7:135394076 [GRCh38]
Chr7:135078828 [GRCh37]
Chr7:7q33		 uncertain significance
NM_001190850.2(CNOT4):c.1945G>C (p.Ala649Pro) single nucleotide variant not specified [RCV004441995] Chr7:135363082 [GRCh38]
Chr7:135047834 [GRCh37]
Chr7:7q33		 uncertain significance
NM_001190850.2(CNOT4):c.767C>T (p.Thr256Met) single nucleotide variant not specified [RCV004441996] Chr7:135410569 [GRCh38]
Chr7:135095319 [GRCh37]
Chr7:7q33		 uncertain significance
NM_001190850.2(CNOT4):c.968G>A (p.Arg323Gln) single nucleotide variant not specified [RCV004441997] Chr7:135395795 [GRCh38]
Chr7:135080547 [GRCh37]
Chr7:7q33		 uncertain significance
NM_001190850.2(CNOT4):c.1306C>G (p.Leu436Val) single nucleotide variant not specified [RCV004441991] Chr7:135394239 [GRCh38]
Chr7:135078991 [GRCh37]
Chr7:7q33		 uncertain significance
NM_001190850.2(CNOT4):c.1333A>G (p.Thr445Ala) single nucleotide variant not specified [RCV004441992] Chr7:135394212 [GRCh38]
Chr7:135078964 [GRCh37]
Chr7:7q33		 uncertain significance
NM_001190850.2(CNOT4):c.1709A>G (p.Asn570Ser) single nucleotide variant not specified [RCV004615491] Chr7:135363985 [GRCh38]
Chr7:135048737 [GRCh37]
Chr7:7q33		 uncertain significance
NM_001190850.2(CNOT4):c.1375G>A (p.Ala459Thr) single nucleotide variant not specified [RCV004615488] Chr7:135394170 [GRCh38]
Chr7:135078922 [GRCh37]
Chr7:7q33		 uncertain significance
NM_001190850.2(CNOT4):c.1408T>C (p.Ser470Pro) single nucleotide variant not specified [RCV004615489] Chr7:135394137 [GRCh38]
Chr7:135078889 [GRCh37]
Chr7:7q33		 uncertain significance
NM_001190850.2(CNOT4):c.1414T>A (p.Leu472Met) single nucleotide variant not specified [RCV004615490] Chr7:135394131 [GRCh38]
Chr7:135078883 [GRCh37]
Chr7:7q33		 uncertain significance
NM_001190850.2(CNOT4):c.1729T>G (p.Ser577Ala) single nucleotide variant not specified [RCV004615492] Chr7:135363965 [GRCh38]
Chr7:135048717 [GRCh37]
Chr7:7q33		 uncertain significance
NM_001190850.2(CNOT4):c.1760C>T (p.Ala587Val) single nucleotide variant not specified [RCV004615493] Chr7:135363934 [GRCh38]
Chr7:135048686 [GRCh37]
Chr7:7q33		 uncertain significance
NM_001190850.2(CNOT4):c.7C>T (p.Arg3Cys) single nucleotide variant not specified [RCV004615499] Chr7:135438325 [GRCh38]
Chr7:135123073 [GRCh37]
Chr7:7q33		 uncertain significance
NM_001190850.2(CNOT4):c.991A>G (p.Thr331Ala) single nucleotide variant not specified [RCV004615498] Chr7:135395772 [GRCh38]
Chr7:135080524 [GRCh37]
Chr7:7q33		 uncertain significance
NM_001190850.2(CNOT4):c.2086C>A (p.Pro696Thr) single nucleotide variant not specified [RCV004615494] Chr7:135362941 [GRCh38]
Chr7:135047693 [GRCh37]
Chr7:7q33		 uncertain significance
NM_001190850.2(CNOT4):c.1303T>C (p.Ser435Pro) single nucleotide variant not specified [RCV004615497] Chr7:135394242 [GRCh38]
Chr7:135078994 [GRCh37]
Chr7:7q33		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4160
Count of miRNA genes:1100
Interacting mature miRNAs:1303
Transcripts:ENST00000315544, ENST00000356162, ENST00000361528, ENST00000414802, ENST00000423368, ENST00000428680, ENST00000451834, ENST00000465721, ENST00000473470, ENST00000491203, ENST00000498534, ENST00000541284
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407104003GWAS752979_Hcognitive function measurement QTL GWAS752979 (human)5e-11cognitive function measurement7135366502135366503Human
407110340GWAS759316_Hmathematical ability QTL GWAS759316 (human)3e-16mathematical ability7135366502135366503Human
407011395GWAS660371_Hsex hormone-binding globulin measurement QTL GWAS660371 (human)2e-17sex hormone-binding globulin measurement7135459223135459224Human
407040067GWAS689043_Hunipolar depression QTL GWAS689043 (human)2e-09unipolar depression7135397999135398000Human
406928899GWAS577875_Hbody height QTL GWAS577875 (human)5e-11body height (VT:0001253)body height (CMO:0000106)7135368655135368656Human
406885699GWAS534675_Hperipheral arterial disease, traffic air pollution measurement QTL GWAS534675 (human)8e-08peripheral arterial disease, traffic air pollution measurement7135485722135485723Human
406999046GWAS648022_Hsex hormone-binding globulin measurement QTL GWAS648022 (human)3e-08sex hormone-binding globulin measurement7135380130135380131Human
407009290GWAS658266_Hheel bone mineral density QTL GWAS658266 (human)4e-09heel bone mineral densitybone mineral density (CMO:0001226)7135373802135373803Human
406942728GWAS591704_Hhousehold income QTL GWAS591704 (human)5e-08household income7135366242135366243Human
406979598GWAS628574_Hheel bone mineral density QTL GWAS628574 (human)1e-08heel bone mineral densitybone mineral density (CMO:0001226)7135370989135370990Human
407085262GWAS734238_Hself reported educational attainment QTL GWAS734238 (human)1e-08self reported educational attainment7135397999135398000Human
407242059GWAS891035_Hbody height QTL GWAS891035 (human)5e-64body height (VT:0001253)body height (CMO:0000106)7135438312135438313Human
406899279GWAS548255_Halcohol consumption measurement QTL GWAS548255 (human)1e-09alcohol consumption measurementethanol drink intake rate (CMO:0001407)7135478149135478150Human
407095570GWAS744546_Hcognitive function measurement QTL GWAS744546 (human)0.000009cognitive function measurement7135368886135368887Human
407169744GWAS818720_Hunipolar depression QTL GWAS818720 (human)6e-13unipolar depression7135367227135367228Human
407103573GWAS752549_Hmathematical ability QTL GWAS752549 (human)4e-13mathematical ability7135414900135414901Human
406920600GWAS569576_Hsmoking initiation QTL GWAS569576 (human)3e-10smoking initiation7135366701135366702Human
406988507GWAS637483_Hsex hormone-binding globulin measurement QTL GWAS637483 (human)5e-12sex hormone-binding globulin measurement7135402112135402113Human
406963611GWAS612587_Halcohol use disorder measurement QTL GWAS612587 (human)8e-09alcohol use disorder measurement7135430389135430390Human
407053720GWAS702696_Hhousehold income QTL GWAS702696 (human)5e-09household income7135366502135366503Human
407310876GWAS959852_Hsmoking initiation QTL GWAS959852 (human)5e-14smoking initiation7135366701135366702Human
407232216GWAS881192_Hbone density QTL GWAS881192 (human)1e-300bone mineral mass (VT:0005007)bone mineral density (CMO:0001226)7135379911135379912Human
407011490GWAS660466_Hsex hormone-binding globulin measurement QTL GWAS660466 (human)9e-16sex hormone-binding globulin measurement7135459223135459224Human
407356647GWAS1005623_Heducational attainment QTL GWAS1005623 (human)7e-21educational attainment7135367227135367228Human
406932192GWAS581168_Hheel bone mineral density QTL GWAS581168 (human)3e-09heel bone mineral densitybone mineral density (CMO:0001226)7135453583135453584Human
407028519GWAS677495_Hsex hormone-binding globulin measurement QTL GWAS677495 (human)9e-10sex hormone-binding globulin measurement7135380130135380131Human
406966887GWAS615863_Hcannabis dependence QTL GWAS615863 (human)4e-08cannabis dependence7135430389135430390Human
407065509GWAS714485_Hself reported educational attainment QTL GWAS714485 (human)3e-15self reported educational attainment7135397999135398000Human
407022117GWAS671093_Hsex hormone-binding globulin measurement QTL GWAS671093 (human)4e-08sex hormone-binding globulin measurement7135402112135402113Human
407063460GWAS712436_Happendicular lean mass QTL GWAS712436 (human)0.000002appendicular lean mass7135438312135438313Human
407012714GWAS661690_Hbody height QTL GWAS661690 (human)5e-10body height (VT:0001253)body height (CMO:0000106)7135438312135438313Human
406899753GWAS548729_Halcohol consumption measurement QTL GWAS548729 (human)2e-11alcohol consumption measurementethanol drink intake rate (CMO:0001407)7135434669135434670Human
407264111GWAS913087_Hclostridium difficile infection QTL GWAS913087 (human)0.0000003clostridium difficile infection7135493856135493857Human
407241708GWAS890684_Hmajor depressive disorder QTL GWAS890684 (human)0.0000003major depressive disorder7135367227135367228Human
407232233GWAS881209_Hbone density QTL GWAS881209 (human)1e-300bone mineral mass (VT:0005007)bone mineral density (CMO:0001226)7135423331135423332Human
406969772GWAS618748_Hopioid use disorder QTL GWAS618748 (human)4e-09conditioned place preference behavior trait (VT:0010723)7135430389135430390Human
406994287GWAS643263_Hsex hormone-binding globulin measurement QTL GWAS643263 (human)1e-09sex hormone-binding globulin measurement7135402112135402113Human
407232232GWAS881208_Hbone density QTL GWAS881208 (human)1e-300bone mineral mass (VT:0005007)bone mineral density (CMO:0001226)7135421435135421436Human
406931694GWAS580670_Hbody height QTL GWAS580670 (human)0.0000002body height (VT:0001253)body height (CMO:0000106)7135368655135368656Human
407021165GWAS670141_Hbody height QTL GWAS670141 (human)1e-09body height (VT:0001253)body height (CMO:0000106)7135372394135372395Human
406920691GWAS569667_Hdiet measurement QTL GWAS569667 (human)2e-08diet measurementfood intake measurement (CMO:0000772)7135365507135365512Human
407108977GWAS757953_Hself reported educational attainment QTL GWAS757953 (human)4e-21self reported educational attainment7135397999135398000Human
406898740GWAS547716_Halcohol consumption measurement QTL GWAS547716 (human)3e-10alcohol consumption measurementethanol drink intake rate (CMO:0001407)7135454263135454264Human
407233074GWAS882050_Happendicular lean mass QTL GWAS882050 (human)5e-13appendicular lean mass7135438312135438313Human
407064638GWAS713614_Happendicular lean mass QTL GWAS713614 (human)4e-08appendicular lean mass7135438312135438313Human
406994428GWAS643404_Hsex hormone-binding globulin measurement QTL GWAS643404 (human)1e-08sex hormone-binding globulin measurement7135380130135380131Human
407169402GWAS818378_Hserum gamma-glutamyl transferase measurement QTL GWAS818378 (human)3e-13serum gamma-glutamyl transferase measurementserum gamma-glutamyltransferase activity level (CMO:0002241)7135418700135418701Human

Markers in Region
D7S500  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377135,108,728 - 135,108,933UniSTSGRCh37
GRCh377135,108,751 - 135,108,931UniSTSGRCh37
GRCh377135,108,883 - 135,108,992UniSTSGRCh37
Build 367134,759,268 - 134,759,473RGDNCBI36
Celera7129,846,193 - 129,846,361UniSTS
Celera7129,846,170 - 129,846,363RGD
Celera7129,846,313 - 129,846,422UniSTS
Cytogenetic Map7q22-qterUniSTS
HuRef7129,411,579 - 129,411,766UniSTS
HuRef7129,411,716 - 129,411,825UniSTS
HuRef7129,411,602 - 129,411,764UniSTS
CRA_TCAGchr7v27134,453,235 - 134,453,344UniSTS
CRA_TCAGchr7v27134,453,115 - 134,453,283UniSTS
CRA_TCAGchr7v27134,453,092 - 134,453,285UniSTS
Marshfield Genetic Map7140.63RGD
Genethon Genetic Map7142.9UniSTS
TNG Radiation Hybrid Map74442.0UniSTS
deCODE Assembly Map7139.77UniSTS
GeneMap99-GB4 RH Map7610.36UniSTS
Whitehead-YAC Contig Map7 UniSTS
G36443  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377135,068,030 - 135,068,135UniSTSGRCh37
Build 367134,718,570 - 134,718,675RGDNCBI36
Celera7129,805,470 - 129,805,575RGD
Cytogenetic Map7q22-qterUniSTS
HuRef7129,370,880 - 129,370,985UniSTS
CRA_TCAGchr7v27134,412,384 - 134,412,489UniSTS
SHGC-36724  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377135,067,440 - 135,067,565UniSTSGRCh37
Build 367134,717,980 - 134,718,105RGDNCBI36
Celera7129,804,880 - 129,805,005RGD
Cytogenetic Map7q22-qterUniSTS
HuRef7129,370,290 - 129,370,415UniSTS
CRA_TCAGchr7v27134,411,794 - 134,411,919UniSTS
RH102723  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377135,067,670 - 135,067,769UniSTSGRCh37
Build 367134,718,210 - 134,718,309RGDNCBI36
Celera7129,805,110 - 129,805,209RGD
Cytogenetic Map7q22-qterUniSTS
HuRef7129,370,520 - 129,370,619UniSTS
CRA_TCAGchr7v27134,412,024 - 134,412,123UniSTS
GeneMap99-GB4 RH Map7610.36UniSTS
G63393  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377135,053,798 - 135,054,082UniSTSGRCh37
Build 367134,704,338 - 134,704,622RGDNCBI36
Celera7129,791,239 - 129,791,523RGD
Cytogenetic Map7q22-qterUniSTS
HuRef7129,356,647 - 129,356,931UniSTS
CRA_TCAGchr7v27134,398,154 - 134,398,438UniSTS
TNG Radiation Hybrid Map74405.0UniSTS
RH69333  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377135,072,856 - 135,073,058UniSTSGRCh37
Build 367134,723,396 - 134,723,598RGDNCBI36
Celera7129,810,297 - 129,810,499RGD
Cytogenetic Map7q22-qterUniSTS
HuRef7129,375,707 - 129,375,909UniSTS
CRA_TCAGchr7v27134,417,211 - 134,417,413UniSTS
GeneMap99-GB4 RH Map7610.36UniSTS
SHGC-36328  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377135,046,635 - 135,046,738UniSTSGRCh37
Build 367134,697,175 - 134,697,278RGDNCBI36
Celera7129,784,072 - 129,784,175RGD
Cytogenetic Map7q22-qterUniSTS
HuRef7129,349,480 - 129,349,583UniSTS
CRA_TCAGchr7v27134,390,987 - 134,391,090UniSTS
GDB:1317696  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377135,182,265 - 135,182,345UniSTSGRCh37
Build 367134,832,805 - 134,832,885RGDNCBI36
Celera7129,919,705 - 129,919,785RGD
Cytogenetic Map7q22-qterUniSTS
HuRef7129,485,121 - 129,485,201UniSTS
CRA_TCAGchr7v27134,526,596 - 134,526,676UniSTS
MARC_13799-13800:1006870121:1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377135,047,492 - 135,047,886UniSTSGRCh37
Build 367134,698,032 - 134,698,426RGDNCBI36
Celera7129,784,929 - 129,785,323RGD
HuRef7129,350,337 - 129,350,731UniSTS
CRA_TCAGchr7v27134,391,844 - 134,392,238UniSTS
CNOT4_3404  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377135,046,404 - 135,047,269UniSTSGRCh37
Build 367134,696,944 - 134,697,809RGDNCBI36
Celera7129,783,841 - 129,784,706RGD
HuRef7129,349,249 - 129,350,114UniSTS
CRA_TCAGchr7v27134,390,756 - 134,391,621UniSTS
D8S2279  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map21q22.12UniSTS
Cytogenetic Map15q13UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map15q22.3UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map21q21.3UniSTS
Cytogenetic Map3p22-p21.3UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map2q24.2UniSTS
Cytogenetic Map17q24.2UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map20q13.3UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map3p14.1UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map7p14.1UniSTS
Cytogenetic Map2q22.3UniSTS
Cytogenetic Map15q13.2UniSTS
Cytogenetic Map12q24.1UniSTS
Cytogenetic Map7p15.2UniSTS
Cytogenetic Map5q31.2UniSTS
Cytogenetic Map2p25.2UniSTS
Cytogenetic Map3p24.3UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map5q14UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map1p36.32UniSTS
Cytogenetic Map1q42.12UniSTS
Cytogenetic Map7q21.11UniSTS
Cytogenetic Map9q34.2UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map8q22.3UniSTS
Cytogenetic Map6p21.1-p12UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map7p21.3UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map22q11.22UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map1q12UniSTS
Cytogenetic Map8p23UniSTS
Cytogenetic Map11q13.2-q13.3UniSTS
Cytogenetic Map13q14.1-q14.3UniSTS
Cytogenetic Map3q22-q24UniSTS
Cytogenetic Map3q13.1-q13.2UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic Map5q23.3-q31.1UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map14q32.3UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map7q32UniSTS
Cytogenetic Map14q32.33UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map17q11UniSTS
Cytogenetic Map17p13.1-p12UniSTS
Cytogenetic Map18q21.33UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map5q14.1UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map1q21-q23UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map4q21.1UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map14q23.3UniSTS
Cytogenetic Map17p12-p11.2UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map1q24UniSTS
Cytogenetic Map1q43UniSTS
Cytogenetic Map9q34.13UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map2q32UniSTS
Cytogenetic MapXp22.2UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map2q33UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map2q11.2UniSTS
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Cytogenetic Map10q23.33UniSTS
Cytogenetic Map12p12.1UniSTS
Cytogenetic Map7p13-p12UniSTS
Cytogenetic MapXq25UniSTS
Cytogenetic Map17q11-q21UniSTS
Cytogenetic Map12q23UniSTS
Cytogenetic Map6p24-p22.3UniSTS
Cytogenetic Map14q23.2UniSTS
Cytogenetic Map7q31.1-q31.2UniSTS
Cytogenetic Map8q22.2UniSTS
Cytogenetic Map15q21.2UniSTS
Cytogenetic Map3p26.1-p25.1UniSTS
Cytogenetic Map5q35UniSTS
Cytogenetic Map3q13.2UniSTS
Cytogenetic Map4p15.2UniSTS
Cytogenetic Map6q16.3UniSTS
Cytogenetic Map17q24-q25UniSTS
Cytogenetic MapXq12UniSTS
Cytogenetic MapXq27.1UniSTS
Cytogenetic Map8q12.3UniSTS
Cytogenetic Map5q21.2UniSTS
Cytogenetic Map5q15UniSTS
Cytogenetic Map5q35.1UniSTS
Cytogenetic Map4q13.3UniSTS
Cytogenetic Map4q35.2UniSTS
Cytogenetic Map3p26.1UniSTS
Cytogenetic Map3p11.1UniSTS
Cytogenetic Map17q21.2UniSTS
Cytogenetic Map2q21.2UniSTS
Cytogenetic Map19p13.13UniSTS
Cytogenetic Map18q12.3UniSTS
Cytogenetic Map18p11.3UniSTS
Cytogenetic Map17q11.1UniSTS
Cytogenetic Map15q25.1UniSTS
Cytogenetic Map13q12.3UniSTS
Cytogenetic Map12q23.2UniSTS
Cytogenetic Map12q12-q13UniSTS
Cytogenetic Map12q14UniSTS
Cytogenetic Map5q33.1UniSTS
Cytogenetic Map2q32-q34UniSTS
Cytogenetic Map16q22.3UniSTS
Cytogenetic Map2p15-p13UniSTS
Cytogenetic MapXp11.4UniSTS
Cytogenetic Map19q13.33-q13.41UniSTS
Cytogenetic Map20p11UniSTS
Cytogenetic Map6q23-q24UniSTS
Cytogenetic Map2p12UniSTS
Cytogenetic Map2p13UniSTS
Cytogenetic Map13q11-q12UniSTS
Cytogenetic Map6p12.3-p11.2UniSTS
Cytogenetic Map6q16.1-q16.3UniSTS
Cytogenetic Map22q11UniSTS
Cytogenetic Map7q31.2UniSTS
Cytogenetic Map10q21.3UniSTS
Cytogenetic Map3q25.2UniSTS
Cytogenetic Map3p21.1-p14.3UniSTS
Cytogenetic Map6p12.1UniSTS
Cytogenetic Map3q23-q24UniSTS
Cytogenetic Map3q12UniSTS
Cytogenetic Map7q11.1UniSTS
Cytogenetic Map3q22.3UniSTS
Cytogenetic Map7q21.3UniSTS
Cytogenetic Map4q31.1UniSTS
Cytogenetic Map22q12-q13UniSTS
Cytogenetic Map4q23UniSTS
Cytogenetic MapXp22.12UniSTS
Cytogenetic Map6q16.1UniSTS
Cytogenetic Map13q14.13UniSTS
Cytogenetic Map18q21.3UniSTS
Cytogenetic Map9q33.2UniSTS
Cytogenetic Map11q21UniSTS
Cytogenetic Map8q12UniSTS
Cytogenetic Map4q28-q32UniSTS
Cytogenetic Map17q24.3UniSTS
Cytogenetic Map6p23UniSTS
Cytogenetic Map8p11UniSTS
Cytogenetic Map5q34UniSTS
Cytogenetic Map1q24.3UniSTS
Cytogenetic Map9q33.1UniSTS
Cytogenetic Map1q23.3UniSTS
Cytogenetic Map2p16.2UniSTS
Cytogenetic Map9q22.31UniSTS
Cytogenetic Map9p24.3UniSTS
Cytogenetic Map7q35UniSTS
Cytogenetic Map1p36.2UniSTS
Cytogenetic Map11q22.3UniSTS
Cytogenetic Map16p12UniSTS
Cytogenetic Map1q22-q23UniSTS
Cytogenetic Map13q22.1UniSTS
Cytogenetic Map2q12.2UniSTS
Cytogenetic Map8p12UniSTS
Cytogenetic Map4q21UniSTS
Cytogenetic Map13q12.2UniSTS
Cytogenetic Map9q31-q33UniSTS
Cytogenetic Map6p24.1UniSTS
Cytogenetic Map1q23UniSTS
Cytogenetic Map11q12-q13UniSTS
Cytogenetic Map11q13.3UniSTS
Cytogenetic Map11q24.2UniSTS
Cytogenetic Map11q12.1UniSTS
Cytogenetic Map3p26UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map8p21UniSTS
Cytogenetic Map19q13.1-q13.2UniSTS
Cytogenetic Map1p33-p32UniSTS
Cytogenetic Map7q36.2UniSTS
Cytogenetic Map4q32.3UniSTS
Cytogenetic Map16p13.2UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map10q11.23UniSTS
Cytogenetic Map10q26.1UniSTS
Cytogenetic Map9q32-q33.3UniSTS
Cytogenetic Map9q22.1-q22.2UniSTS
Cytogenetic Map3q26.1-q26.2UniSTS
Cytogenetic Map5q31-q34UniSTS
Cytogenetic Map9q33-q34UniSTS
Cytogenetic Map5q11.2-q13.2UniSTS
Cytogenetic Map13q32UniSTS
Cytogenetic Map9q22.32UniSTS
Cytogenetic Map1p36.3UniSTS
Cytogenetic Map1p36.3-p36.2UniSTS
Cytogenetic Map4q28.1UniSTS
Cytogenetic Map5q22UniSTS
Cytogenetic Map12p11.21UniSTS
Cytogenetic MapXq13.3UniSTS
Cytogenetic Map9q31.3UniSTS
Cytogenetic Map3p26.3UniSTS
Cytogenetic Map2q11.1UniSTS
Cytogenetic Map21q11.2UniSTS
Cytogenetic Map18q21.32UniSTS
Cytogenetic Map15q26.2UniSTS
Cytogenetic Map12q24.23UniSTS
Cytogenetic Map10q25.3UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map20p12.1UniSTS
Cytogenetic Map2q31.1-q31.2UniSTS
Cytogenetic MapXp22.31UniSTS
Cytogenetic MapXp21.3UniSTS
Cytogenetic Map5q33.3UniSTS
Cytogenetic Map4q28.2UniSTS
Cytogenetic Map3p14.2UniSTS
Cytogenetic Map3q24UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map20q13.2UniSTS
Cytogenetic Map14q11.2-q12UniSTS
Cytogenetic Map3p24UniSTS
Cytogenetic Map12q23.3UniSTS
Cytogenetic Map11q24.3UniSTS
Cytogenetic Map11q14.3UniSTS
Cytogenetic Map10q25.2UniSTS
Cytogenetic Map3q25.1UniSTS
Cytogenetic Map8q13UniSTS
Cytogenetic Map1p22.2UniSTS
Cytogenetic Map3p22.3UniSTS
Cytogenetic Map18q11.1UniSTS
Cytogenetic Map8q23.3UniSTS
Cytogenetic Map15q24UniSTS
Cytogenetic Map11cen-q12UniSTS
Cytogenetic Map11q25UniSTS
Cytogenetic Map3p22.2UniSTS
Cytogenetic MapXp21.1UniSTS
Cytogenetic Map7q36UniSTS
Cytogenetic Map7p14.3UniSTS
Cytogenetic Map12q21UniSTS
Cytogenetic Map7p15UniSTS
Cytogenetic Map7q22-q31UniSTS
Cytogenetic Map11q22UniSTS
Cytogenetic Map5p15.3UniSTS
Cytogenetic Map20q13.3-qterUniSTS
Cytogenetic Map1p35-p34UniSTS
Cytogenetic Map4p13-p12UniSTS
Cytogenetic Map10q21-q22UniSTS
Cytogenetic Map4q22UniSTS
Cytogenetic Map7p13-p11.1UniSTS
Cytogenetic Map9q31-q34UniSTS
Cytogenetic Map7q21.1-q22UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map3q13.13-q13.2UniSTS
Cytogenetic MapXp22.13UniSTS
Cytogenetic Map13q12.12UniSTS
Cytogenetic Map13q14.2UniSTS
Cytogenetic Map12qUniSTS
Cytogenetic Map1pUniSTS
Cytogenetic Map16pUniSTS
Cytogenetic Map15qUniSTS
Cytogenetic Map7qUniSTS
Cytogenetic Map2qUniSTS
Cytogenetic Map5q13.1UniSTS
Cytogenetic Map11p14.1UniSTS
Cytogenetic Map4q32UniSTS
Cytogenetic Map2p22UniSTS
Cytogenetic Map5q14.3UniSTS
Cytogenetic Map10p12.1UniSTS
Cytogenetic Map5q23.2UniSTS
Cytogenetic Map2p24.1UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map12p13.32UniSTS
Cytogenetic Map9p21.1UniSTS
Cytogenetic Map9q34.2-q34.3UniSTS
ksks430  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377135,047,586 - 135,047,860UniSTSGRCh37
Celera7129,785,023 - 129,785,297UniSTS
HuRef7129,350,431 - 129,350,705UniSTS
CRA_TCAGchr7v27134,391,938 - 134,392,212UniSTS
D7S500  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7q22-qterUniSTS
Cytogenetic Map7q33UniSTS
Marshfield Genetic Map7140.63UniSTS
Genethon Genetic Map7142.9UniSTS
TNG Radiation Hybrid Map74442.0UniSTS
deCODE Assembly Map7139.77UniSTS
Whitehead-YAC Contig Map7 UniSTS
D7S500  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7q22-qterUniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2253 4974 1726 2351 6 624 1951 465 2270 7306 6472 53 3734 1 852 1744 1617 175 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001008225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001190847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001190848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001190849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001190850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001393370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001393371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001393372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001393373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001393374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001393375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_013316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017012235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024446772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047420412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047420413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047420414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047420415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054358268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054358269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054358270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054358271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC009331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC083871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF091094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF180475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK074493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK074671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK300365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK314540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL389980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL519669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC035590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA396599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH236950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA247976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF458604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF458610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF458616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF510131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF510984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF510987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KT584577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U71267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U71268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000315544   ⟹   ENSP00000326731
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7135,387,070 - 135,510,127 (-)Ensembl
Ensembl Acc Id: ENST00000356162   ⟹   ENSP00000348485
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7135,361,798 - 135,415,214 (-)Ensembl
Ensembl Acc Id: ENST00000361528   ⟹   ENSP00000354673
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7135,362,885 - 135,510,091 (-)Ensembl
Ensembl Acc Id: ENST00000414802   ⟹   ENSP00000416532
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7135,384,290 - 135,438,331 (-)Ensembl
Ensembl Acc Id: ENST00000423368   ⟹   ENSP00000406777
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7135,361,798 - 135,510,077 (-)Ensembl
Ensembl Acc Id: ENST00000428680   ⟹   ENSP00000399108
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7135,386,151 - 135,510,076 (-)Ensembl
Ensembl Acc Id: ENST00000451834   ⟹   ENSP00000388491
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7135,361,795 - 135,510,080 (-)Ensembl
Ensembl Acc Id: ENST00000465721
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7135,422,314 - 135,509,717 (-)Ensembl
Ensembl Acc Id: ENST00000473470
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7135,362,999 - 135,387,887 (-)Ensembl
Ensembl Acc Id: ENST00000491203
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7135,422,221 - 135,509,693 (-)Ensembl
Ensembl Acc Id: ENST00000498534
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7135,422,276 - 135,509,938 (-)Ensembl
Ensembl Acc Id: ENST00000541284   ⟹   ENSP00000445508
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7135,361,795 - 135,510,102 (-)Ensembl
Ensembl Acc Id: ENST00000707062   ⟹   ENSP00000516713
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7135,362,231 - 135,510,145 (-)Ensembl
Ensembl Acc Id: ENST00000707063   ⟹   ENSP00000516714
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7135,363,013 - 135,509,667 (-)Ensembl
Ensembl Acc Id: ENST00000707064   ⟹   ENSP00000516715
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7135,387,741 - 135,510,086 (-)Ensembl
RefSeq Acc Id: NM_001008225   ⟹   NP_001008226
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387135,387,070 - 135,510,102 (-)NCBI
GRCh377135,046,547 - 135,194,875 (-)RGD
Build 367134,723,304 - 134,845,391 (-)NCBI Archive
Celera7129,783,984 - 129,932,315 (-)RGD
HuRef7129,349,392 - 129,497,731 (-)RGD
CHM1_17135,005,766 - 135,128,729 (-)NCBI
T2T-CHM13v2.07136,694,978 - 136,817,325 (-)NCBI
CRA_TCAGchr7v27134,390,899 - 134,539,206 (-)ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001190847   ⟹   NP_001177776
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387135,361,795 - 135,510,102 (-)NCBI
GRCh377135,046,547 - 135,194,875 (-)RGD
Celera7129,783,984 - 129,932,315 (-)RGD
HuRef7129,349,392 - 129,497,731 (-)RGD
CHM1_17134,980,486 - 135,128,729 (-)NCBI
T2T-CHM13v2.07136,669,704 - 136,817,325 (-)NCBI
CRA_TCAGchr7v27134,390,899 - 134,539,206 (-)ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001190848   ⟹   NP_001177777
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387135,387,070 - 135,510,102 (-)NCBI
GRCh377135,046,547 - 135,194,875 (-)RGD
Celera7129,783,984 - 129,932,315 (-)RGD
HuRef7129,349,392 - 129,497,731 (-)RGD
CHM1_17135,005,766 - 135,128,729 (-)NCBI
T2T-CHM13v2.07136,694,978 - 136,817,325 (-)NCBI
CRA_TCAGchr7v27134,390,899 - 134,539,206 (-)ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001190849   ⟹   NP_001177778
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387135,361,795 - 135,510,102 (-)NCBI
GRCh377135,046,547 - 135,194,875 (-)RGD
Celera7129,783,984 - 129,932,315 (-)RGD
HuRef7129,349,392 - 129,497,731 (-)RGD
CHM1_17134,980,486 - 135,128,729 (-)NCBI
T2T-CHM13v2.07136,669,704 - 136,817,325 (-)NCBI
CRA_TCAGchr7v27134,390,899 - 134,539,206 (-)ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001190850   ⟹   NP_001177779
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387135,361,795 - 135,510,102 (-)NCBI
GRCh377135,046,547 - 135,194,875 (-)RGD
Celera7129,783,984 - 129,932,315 (-)RGD
HuRef7129,349,392 - 129,497,731 (-)RGD
CHM1_17134,980,486 - 135,128,729 (-)NCBI
T2T-CHM13v2.07136,669,704 - 136,817,325 (-)NCBI
CRA_TCAGchr7v27134,390,899 - 134,539,206 (-)ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001393370   ⟹   NP_001380299
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387135,361,795 - 135,510,102 (-)NCBI
T2T-CHM13v2.07136,669,704 - 136,817,325 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001393371   ⟹   NP_001380300
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387135,361,795 - 135,510,102 (-)NCBI
T2T-CHM13v2.07136,669,704 - 136,817,325 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001393372   ⟹   NP_001380301
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387135,361,795 - 135,510,102 (-)NCBI
T2T-CHM13v2.07136,669,704 - 136,817,325 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001393373   ⟹   NP_001380302
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387135,361,795 - 135,510,102 (-)NCBI
T2T-CHM13v2.07136,669,704 - 136,817,325 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001393374   ⟹   NP_001380303
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387135,361,795 - 135,510,102 (-)NCBI
T2T-CHM13v2.07136,669,704 - 136,817,325 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001393375   ⟹   NP_001380304
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387135,361,795 - 135,510,102 (-)NCBI
T2T-CHM13v2.07136,669,704 - 136,817,325 (-)NCBI
Sequence:
RefSeq Acc Id: NM_013316   ⟹   NP_037448
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387135,361,795 - 135,510,102 (-)NCBI
GRCh377135,046,547 - 135,194,875 (-)RGD
Build 367134,697,089 - 134,845,391 (-)NCBI Archive
Celera7129,783,984 - 129,932,315 (-)RGD
HuRef7129,349,392 - 129,497,731 (-)RGD
CHM1_17134,980,486 - 135,128,729 (-)NCBI
T2T-CHM13v2.07136,669,704 - 136,817,325 (-)NCBI
CRA_TCAGchr7v27134,390,899 - 134,539,206 (-)ENTREZGENE
Sequence:
RefSeq Acc Id: XM_047420412   ⟹   XP_047276368
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387135,361,795 - 135,509,157 (-)NCBI
RefSeq Acc Id: XM_047420413   ⟹   XP_047276369
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387135,361,795 - 135,509,157 (-)NCBI
RefSeq Acc Id: XM_047420414   ⟹   XP_047276370
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387135,387,070 - 135,509,157 (-)NCBI
RefSeq Acc Id: XM_047420415   ⟹   XP_047276371
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387135,387,070 - 135,509,157 (-)NCBI
RefSeq Acc Id: XM_054358268   ⟹   XP_054214243
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.07136,669,704 - 136,816,380 (-)NCBI
RefSeq Acc Id: XM_054358269   ⟹   XP_054214244
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.07136,669,704 - 136,816,380 (-)NCBI
RefSeq Acc Id: XM_054358270   ⟹   XP_054214245
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.07136,694,978 - 136,816,380 (-)NCBI
RefSeq Acc Id: XM_054358271   ⟹   XP_054214246
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.07136,694,978 - 136,816,380 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001008226 (Get FASTA)   NCBI Sequence Viewer  
  NP_001177776 (Get FASTA)   NCBI Sequence Viewer  
  NP_001177777 (Get FASTA)   NCBI Sequence Viewer  
  NP_001177778 (Get FASTA)   NCBI Sequence Viewer  
  NP_001177779 (Get FASTA)   NCBI Sequence Viewer  
  NP_001380299 (Get FASTA)   NCBI Sequence Viewer  
  NP_001380300 (Get FASTA)   NCBI Sequence Viewer  
  NP_001380301 (Get FASTA)   NCBI Sequence Viewer  
  NP_001380302 (Get FASTA)   NCBI Sequence Viewer  
  NP_001380303 (Get FASTA)   NCBI Sequence Viewer  
  NP_001380304 (Get FASTA)   NCBI Sequence Viewer  
  NP_037448 (Get FASTA)   NCBI Sequence Viewer  
  XP_047276368 (Get FASTA)   NCBI Sequence Viewer  
  XP_047276369 (Get FASTA)   NCBI Sequence Viewer  
  XP_047276370 (Get FASTA)   NCBI Sequence Viewer  
  XP_047276371 (Get FASTA)   NCBI Sequence Viewer  
  XP_054214243 (Get FASTA)   NCBI Sequence Viewer  
  XP_054214244 (Get FASTA)   NCBI Sequence Viewer  
  XP_054214245 (Get FASTA)   NCBI Sequence Viewer  
  XP_054214246 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC72963 (Get FASTA)   NCBI Sequence Viewer  
  AAD00179 (Get FASTA)   NCBI Sequence Viewer  
  AAD00180 (Get FASTA)   NCBI Sequence Viewer  
  AAF29829 (Get FASTA)   NCBI Sequence Viewer  
  AAH35590 (Get FASTA)   NCBI Sequence Viewer  
  BAC11125 (Get FASTA)   NCBI Sequence Viewer  
  BAG51961 (Get FASTA)   NCBI Sequence Viewer  
  BAH13270 (Get FASTA)   NCBI Sequence Viewer  
  CAB97536 (Get FASTA)   NCBI Sequence Viewer  
  EAW83849 (Get FASTA)   NCBI Sequence Viewer  
  EAW83850 (Get FASTA)   NCBI Sequence Viewer  
  EAW83851 (Get FASTA)   NCBI Sequence Viewer  
  EAW83852 (Get FASTA)   NCBI Sequence Viewer  
  EAW83853 (Get FASTA)   NCBI Sequence Viewer  
  EAW83854 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000326731
  ENSP00000326731.5
  ENSP00000354673
  ENSP00000354673.4
  ENSP00000388491
  ENSP00000388491.1
  ENSP00000399108
  ENSP00000399108.2
  ENSP00000406777
  ENSP00000406777.2
  ENSP00000416532.1
  ENSP00000445508
  ENSP00000445508.1
  ENSP00000516713.1
  ENSP00000516714.1
  ENSP00000516715
  ENSP00000516715.1
GenBank Protein O95628 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_037448   ⟸   NM_013316
- Peptide Label: isoform a
- UniProtKB: A0A9L9PY48 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001177776   ⟸   NM_001190847
- Peptide Label: isoform c
- UniProtKB: A0A9L9PY48 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001177778   ⟸   NM_001190849
- Peptide Label: isoform e
- UniProtKB: O95628 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001177779   ⟸   NM_001190850
- Peptide Label: isoform f
- UniProtKB: O95628 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001008226   ⟸   NM_001008225
- Peptide Label: isoform b
- UniProtKB: A0A9L9PY48 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001177777   ⟸   NM_001190848
- Peptide Label: isoform d
- UniProtKB: Q9NPQ1 (UniProtKB/Swiss-Prot),   Q8NCL0 (UniProtKB/Swiss-Prot),   Q8IYM7 (UniProtKB/Swiss-Prot),   O95627 (UniProtKB/Swiss-Prot),   O95339 (UniProtKB/Swiss-Prot),   F8VQP3 (UniProtKB/Swiss-Prot),   E7ET38 (UniProtKB/Swiss-Prot),   B7Z6I4 (UniProtKB/Swiss-Prot),   Q9NZN6 (UniProtKB/Swiss-Prot),   O95628 (UniProtKB/Swiss-Prot),   A0A9L9PY48 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000445508   ⟸   ENST00000541284
Ensembl Acc Id: ENSP00000406777   ⟸   ENST00000423368
Ensembl Acc Id: ENSP00000388491   ⟸   ENST00000451834
Ensembl Acc Id: ENSP00000416532   ⟸   ENST00000414802
Ensembl Acc Id: ENSP00000399108   ⟸   ENST00000428680
Ensembl Acc Id: ENSP00000354673   ⟸   ENST00000361528
Ensembl Acc Id: ENSP00000326731   ⟸   ENST00000315544
Ensembl Acc Id: ENSP00000348485   ⟸   ENST00000356162
RefSeq Acc Id: NP_001380302   ⟸   NM_001393373
- Peptide Label: isoform i
RefSeq Acc Id: NP_001380300   ⟸   NM_001393371
- Peptide Label: isoform g
RefSeq Acc Id: NP_001380304   ⟸   NM_001393375
- Peptide Label: isoform k
- UniProtKB: A0A9L9PY48 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001380301   ⟸   NM_001393372
- Peptide Label: isoform h
RefSeq Acc Id: NP_001380303   ⟸   NM_001393374
- Peptide Label: isoform a
- UniProtKB: A0A9L9PY48 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001380299   ⟸   NM_001393370
- Peptide Label: isoform f
RefSeq Acc Id: XP_047276368   ⟸   XM_047420412
- Peptide Label: isoform X1
RefSeq Acc Id: XP_047276369   ⟸   XM_047420413
- Peptide Label: isoform X2
RefSeq Acc Id: XP_047276371   ⟸   XM_047420415
- Peptide Label: isoform X4
RefSeq Acc Id: XP_047276370   ⟸   XM_047420414
- Peptide Label: isoform X3
- UniProtKB: Q9NPQ1 (UniProtKB/Swiss-Prot),   Q8NCL0 (UniProtKB/Swiss-Prot),   Q8IYM7 (UniProtKB/Swiss-Prot),   O95628 (UniProtKB/Swiss-Prot),   O95627 (UniProtKB/Swiss-Prot),   O95339 (UniProtKB/Swiss-Prot),   F8VQP3 (UniProtKB/Swiss-Prot),   E7ET38 (UniProtKB/Swiss-Prot),   B7Z6I4 (UniProtKB/Swiss-Prot),   Q9NZN6 (UniProtKB/Swiss-Prot)
Ensembl Acc Id: ENSP00000516715   ⟸   ENST00000707064
Ensembl Acc Id: ENSP00000516713   ⟸   ENST00000707062
Ensembl Acc Id: ENSP00000516714   ⟸   ENST00000707063
RefSeq Acc Id: XP_054214243   ⟸   XM_054358268
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054214244   ⟸   XM_054358269
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054214246   ⟸   XM_054358271
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054214245   ⟸   XM_054358270
- Peptide Label: isoform X3
- UniProtKB: Q9NPQ1 (UniProtKB/Swiss-Prot),   Q8NCL0 (UniProtKB/Swiss-Prot),   Q8IYM7 (UniProtKB/Swiss-Prot),   O95628 (UniProtKB/Swiss-Prot),   O95627 (UniProtKB/Swiss-Prot),   O95339 (UniProtKB/Swiss-Prot),   F8VQP3 (UniProtKB/Swiss-Prot),   E7ET38 (UniProtKB/Swiss-Prot),   B7Z6I4 (UniProtKB/Swiss-Prot),   Q9NZN6 (UniProtKB/Swiss-Prot)
Protein Domains
C3H1-type   RING-type   RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O95628-F1-model_v2 AlphaFold O95628 1-575 view protein structure

Promoters
RGD ID:6805503
Promoter ID:HG_KWN:59819
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000262563,   ENST00000356162,   NM_013316,   OTTHUMT00000340669,   OTTHUMT00000340670,   OTTHUMT00000340672,   OTTHUMT00000340673,   OTTHUMT00000340674,   UC003VST.1,   UC003VSV.1
Position:
Human AssemblyChrPosition (strand)Source
Build 367134,845,281 - 134,845,932 (-)MPROMDB
RGD ID:7211993
Promoter ID:EPDNEW_H11742
Type:initiation region
Name:CNOT4_1
Description:CCR4-NOT transcription complex subunit 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh387135,510,102 - 135,510,162EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:7880 AgrOrtholog
COSMIC CNOT4 COSMIC
Ensembl Genes ENSG00000080802 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000315544 ENTREZGENE
  ENST00000315544.6 UniProtKB/Swiss-Prot
  ENST00000361528 ENTREZGENE
  ENST00000361528.8 UniProtKB/Swiss-Prot
  ENST00000414802.5 UniProtKB/Swiss-Prot
  ENST00000423368 ENTREZGENE
  ENST00000423368.6 UniProtKB/Swiss-Prot
  ENST00000428680 ENTREZGENE
  ENST00000428680.6 UniProtKB/Swiss-Prot
  ENST00000451834 ENTREZGENE
  ENST00000451834.5 UniProtKB/Swiss-Prot
  ENST00000541284 ENTREZGENE
  ENST00000541284.6 UniProtKB/Swiss-Prot
  ENST00000707062.1 UniProtKB/TrEMBL
  ENST00000707063.1 UniProtKB/TrEMBL
  ENST00000707064 ENTREZGENE
  ENST00000707064.1 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.70.330 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000080802 GTEx
HGNC ID HGNC:7880 ENTREZGENE
Human Proteome Map CNOT4 Human Proteome Map
InterPro CNOT4_RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Mot2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NOT4_mRING-HC-C4C4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_dom_euk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_CCCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:4850 UniProtKB/Swiss-Prot
NCBI Gene 4850 ENTREZGENE
OMIM 604911 OMIM
PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12603 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-RING_4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA26675 PharmGKB
PROSITE RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_C3H1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART RRM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF54928 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A9L9PY48 ENTREZGENE, UniProtKB/TrEMBL
  A0A9L9PY79_HUMAN UniProtKB/TrEMBL
  B7Z6I4 ENTREZGENE
  CNOT4_HUMAN UniProtKB/Swiss-Prot
  E7ET38 ENTREZGENE
  F8VQP3 ENTREZGENE
  O95339 ENTREZGENE
  O95627 ENTREZGENE
  O95628 ENTREZGENE
  Q8IYM7 ENTREZGENE
  Q8NCL0 ENTREZGENE
  Q9NPQ1 ENTREZGENE
  Q9NZN6 ENTREZGENE
UniProt Secondary B7Z6I4 UniProtKB/Swiss-Prot
  E7ET38 UniProtKB/Swiss-Prot
  F8VQP3 UniProtKB/Swiss-Prot
  O95339 UniProtKB/Swiss-Prot
  O95627 UniProtKB/Swiss-Prot
  Q8IYM7 UniProtKB/Swiss-Prot
  Q8NCL0 UniProtKB/Swiss-Prot
  Q9NPQ1 UniProtKB/Swiss-Prot
  Q9NZN6 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-08 CNOT4  CCR4-NOT transcription complex subunit 4    CCR4-NOT transcription complex, subunit 4  Symbol and/or name change 5135510 APPROVED