NECAB3 (N-terminal EF-hand calcium binding protein 3) - Rat Genome Database

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Gene: NECAB3 (N-terminal EF-hand calcium binding protein 3) Homo sapiens
Analyze
Symbol: NECAB3
Name: N-terminal EF-hand calcium binding protein 3
RGD ID: 1320847
HGNC Page HGNC:15851
Description: Predicted to enable calcium ion binding activity. Involved in regulation of amyloid precursor protein biosynthetic process. Located in Golgi cis cisterna and endoplasmic reticulum membrane.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: amyloid beta (A4) precursor protein-binding, family A, member 2 binding protein; amyloid beta A4 protein-binding family A member 2-binding protein; APBA2BP; dJ63M2.4; dJ63M2.5; EF-hand calcium binding protein 3; EFCBP3; N-terminal EF-hand calcium-binding protein 3; Nek2-interacting protein 1; neuronal calcium-binding protein 3; neuronal calcium-binding protein NECAB3; NIP1; STIP3; synaptotagmin interacting protein 2; synaptotagmin interacting protein STIP3; SYTIP2; X11L-binding protein 51; XB51
RGD Orthologs
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382033,657,087 - 33,675,348 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2033,657,087 - 33,674,463 (-)EnsemblGRCh38hg38GRCh38
GRCh372032,244,893 - 32,262,234 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362031,708,554 - 31,725,925 (-)NCBINCBI36Build 36hg18NCBI36
Build 342031,708,554 - 31,725,923NCBI
Celera2028,997,925 - 29,015,296 (-)NCBICelera
Cytogenetic Map20q11.22NCBI
HuRef2029,030,990 - 29,048,237 (-)NCBIHuRef
CHM1_12032,145,985 - 32,163,356 (-)NCBICHM1_1
T2T-CHM13v2.02035,383,618 - 35,401,879 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
NECAB3Humanglutathione synthetase deficiency  IAGPRGD:4058746128554872ClinVar Annotator: match by term: PYROGLUTAMIC ACIDURIAClinVarPMID:12638941|PMID:15717202|PMID:28492532
NECAB3Humanglutatione synthetase deficiency with 5-oxoprolinuria  IAGPRGD:4058746128554872ClinVar Annotator: match by term: 5-OXOPROLINURIA DUE TO GLUTATHIONE SYNTHETASE DEFICIENCYClinVarPMID:12638941|PMID:15717202|PMID:28492532
NECAB3Humanhypermethioninemia with deficiency of S-adenosylhomocysteine hydrolase  IAGPRGD:4058746448554872ClinVar Annotator: match by term: Hypermethioninemia with deficiency of S-adenosylhomocysteine hydrolaseClinVarPMID:15024124|PMID:20852937|PMID:28492532
NECAB3Humanlong QT syndrome  IAGPRGD:13819266|RGD:138196798554872ClinVar Annotator: match by term: Long QT syndromeClinVarPMID:28492532

1 to 20 of 33 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
NECAB3Human17alpha-ethynylestradiol multiple interactionsISORGD:13208486480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of NECAB3 mRNACTDPMID:17942748
NECAB3Human17alpha-ethynylestradiol increases expressionISORGD:13208486480464Ethinyl Estradiol results in increased expression of NECAB3 mRNACTDPMID:17942748
NECAB3Human2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISORGD:13208486480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of NECAB3 mRNACTDPMID:17942748
NECAB3Human4,4'-sulfonyldiphenol decreases expressionISORGD:13208486480464bisphenol S results in decreased expression of NECAB3 mRNACTDPMID:30951980
NECAB3Human6-propyl-2-thiouracil multiple interactionsISORGD:13208486480464[Propylthiouracil co-treated with Iodine deficiency] results in decreased expression of NECAB3 mRNACTDPMID:36706583
NECAB3Humanacrylamide decreases expressionEXP 6480464Acrylamide results in decreased expression of NECAB3 mRNACTDPMID:32763439
NECAB3Humanantirheumatic drug increases expressionEXP 6480464Antirheumatic Agents results in increased expression of NECAB3 mRNACTDPMID:24449571
NECAB3Humanaristolochic acid A decreases expressionEXP 6480464aristolochic acid I results in decreased expression of NECAB3 mRNACTDPMID:33212167
NECAB3Humanarsane affects methylationEXP 6480464Arsenic affects the methylation of NECAB3 geneCTDPMID:25304211
NECAB3Humanarsenic atom affects methylationEXP 6480464Arsenic affects the methylation of NECAB3 geneCTDPMID:25304211
NECAB3Humanbenzo[a]pyrene decreases expressionEXP 6480464Benzo(a)pyrene results in decreased expression of NECAB3 mRNACTDPMID:20106945
NECAB3Humanbenzo[a]pyrene increases methylationEXP 6480464Benzo(a)pyrene results in increased methylation of NECAB3 promoterCTDPMID:27901495
NECAB3Humanbisphenol A decreases methylationISORGD:13208486480464bisphenol A results in decreased methylation of NECAB3 promoterCTDPMID:27312807
NECAB3Humanbisphenol A decreases methylationEXP 6480464bisphenol A results in decreased methylation of NECAB3 geneCTDPMID:31601247
NECAB3Humanbisphenol A decreases expressionISORGD:13208486480464bisphenol A results in decreased expression of NECAB3 mRNACTDPMID:35598803
NECAB3Humanbisphenol F decreases expressionISORGD:13208486480464bisphenol F results in decreased expression of NECAB3 mRNACTDPMID:30951980
NECAB3Humancadmium dichloride decreases expressionEXP 6480464Cadmium Chloride results in decreased expression of NECAB3 mRNACTDPMID:38568856
NECAB3HumanCGP 52608 multiple interactionsEXP 6480464CGP 52608 promotes the reaction [RORA protein binds to NECAB3 gene]CTDPMID:28238834
NECAB3Humancisplatin multiple interactionsEXP 6480464[Cisplatin co-treated with jinfukang] results in increased expression of NECAB3 mRNACTDPMID:27392435
NECAB3Humandiiodine multiple interactionsISORGD:13208486480464[Propylthiouracil co-treated with Iodine deficiency] results in decreased expression of NECAB3 mRNACTDPMID:36706583

1 to 20 of 33 rows

Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
NECAB3Humanprotein secretion involved_inNAS 150520179 PMID:12780348UniProtPMID:12780348
NECAB3Humanregulation of amyloid precursor protein biosynthetic process involved_inIDA 150520179 PMID:10833507UniProtPMID:10833507
NECAB3Humanregulation of amyloid precursor protein biosynthetic process involved_inIBAPANTHER:PTN000953129|UniProtKB:Q96P71150520179 GO_CentralGO_REF:0000033

Cellular Component
1 to 12 of 12 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
NECAB3Humancytoplasm located_inIDA 150520179 PMID:10833507UniProtPMID:10833507
NECAB3Humancytoplasm is_active_inIBAMGI:1861721|PANTHER:PTN000953129|UniProtKB:Q8N987|UniProtKB:Q96P71150520179 GO_CentralGO_REF:0000033
NECAB3Humanendoplasmic reticulum located_inIEAUniProtKB:Q9D6J4|ensembl:ENSMUSP00000000895150520179 EnsemblGO_REF:0000107
NECAB3Humanendoplasmic reticulum is_active_inIBAMGI:1861721|PANTHER:PTN002638592|UniProtKB:Q96P71150520179 GO_CentralGO_REF:0000033
NECAB3Humanendoplasmic reticulum membrane located_inIDA 150520179 PMID:10833507UniProtPMID:10833507
NECAB3HumanGolgi apparatus located_inIEAUniProtKB-KW:KW-0333150520179 UniProtGO_REF:0000043
NECAB3HumanGolgi apparatus located_inIDA 150520179 HPAGO_REF:0000052
NECAB3HumanGolgi apparatus located_inIEAUniProtKB-SubCell:SL-0132150520179 UniProtGO_REF:0000044
NECAB3HumanGolgi cis cisterna located_inIDA 150520179 PMID:10833507UniProtPMID:10833507
NECAB3HumanGolgi cis cisterna is_active_inIBAMGI:1861721|PANTHER:PTN002638592|UniProtKB:Q96P71150520179 GO_CentralGO_REF:0000033
NECAB3HumanGolgi cis cisterna located_inIEAUniProtKB:Q9D6J4|ensembl:ENSMUSP00000000895150520179 EnsemblGO_REF:0000107
NECAB3Humannucleus located_inNAS 150520179 PMID:10833507UniProtPMID:10833507
1 to 12 of 12 rows

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
NECAB3Humancalcium ion binding enablesIEAInterPro:IPR002048150520179 InterProGO_REF:0000002
NECAB3Humanmetal ion binding enablesIEAUniProtKB-KW:KW-0479150520179 UniProtGO_REF:0000043
NECAB3Humanprotein binding enablesIPIUniProtKB:O96018150520179 PMID:26948053, PMID:28514442, PMID:33961781IntActPMID:26948053|PMID:28514442|PMID:33961781
NECAB3Humanprotein binding enablesIPIUniProtKB:P21917|UniProtKB:Q14114-3150520179 PMID:32814053IntActPMID:32814053
NECAB3Humanprotein binding enablesIPIUniProtKB:Q99767150520179 PMID:10833507UniProtPMID:10833507

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
NECAB3HumanProlonged QT interval  IAGPRGD:1267619038554872ClinVar Annotator: match by term: Long QT syndromeClinVar 
NECAB3HumanProlonged QT interval  IAGPRGD:138196798554872ClinVar Annotator: match by term: Long QT syndromeClinVarPMID:28492532
NECAB3HumanProlonged QT interval  IAGPRGD:138192668554872ClinVar Annotator: match by term: Long QT syndromeClinVarPMID:28492532
NECAB3HumanReduced glutathione synthetase level  IAGPRGD:4058746128554872ClinVar Annotator: match by term: Reduced glutathione synthetase levelClinVarPMID:12638941|PMID:15717202|PMID:28492532

#
Reference Title
Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:9776767   PMID:10715114   PMID:10833507   PMID:11780052   PMID:12044471   PMID:12477932   PMID:12780348   PMID:14697346   PMID:14702039   PMID:15489334   PMID:18854154   PMID:19035353  
PMID:20098747   PMID:20237496   PMID:21048031   PMID:21653829   PMID:21832049   PMID:21873635   PMID:22623531   PMID:26687681   PMID:26948053   PMID:28514442   PMID:28986522   PMID:31267263  
PMID:32814053   PMID:33961781   PMID:35914814  



NECAB3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382033,657,087 - 33,675,348 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2033,657,087 - 33,674,463 (-)EnsemblGRCh38hg38GRCh38
GRCh372032,244,893 - 32,262,234 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362031,708,554 - 31,725,925 (-)NCBINCBI36Build 36hg18NCBI36
Build 342031,708,554 - 31,725,923NCBI
Celera2028,997,925 - 29,015,296 (-)NCBICelera
Cytogenetic Map20q11.22NCBI
HuRef2029,030,990 - 29,048,237 (-)NCBIHuRef
CHM1_12032,145,985 - 32,163,356 (-)NCBICHM1_1
T2T-CHM13v2.02035,383,618 - 35,401,879 (-)NCBIT2T-CHM13v2.0
Necab3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392154,386,311 - 154,401,326 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2154,386,319 - 154,400,810 (-)EnsemblGRCm39 Ensembl
GRCm382154,544,391 - 154,559,406 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2154,544,399 - 154,558,890 (-)EnsemblGRCm38mm10GRCm38
MGSCv372154,370,141 - 154,384,589 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362154,235,846 - 154,247,095 (-)NCBIMGSCv36mm8
Celera2160,458,609 - 160,473,071 (-)NCBICelera
Cytogenetic Map2H1NCBI
cM Map276.79NCBI
Necab3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542227,644,916 - 27,659,820 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542227,644,913 - 27,660,538 (+)NCBIChiLan1.0ChiLan1.0
NECAB3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22139,348,026 - 39,366,136 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12039,341,127 - 39,359,237 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02029,944,457 - 29,962,566 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12031,085,500 - 31,103,274 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2031,085,500 - 31,100,871 (-)Ensemblpanpan1.1panPan2
NECAB3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12422,877,723 - 22,893,892 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2422,878,402 - 22,904,656 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2422,522,944 - 22,539,095 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02423,564,444 - 23,580,577 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2423,564,448 - 23,580,930 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12422,856,920 - 22,873,068 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02422,950,478 - 22,966,614 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02423,381,563 - 23,397,718 (-)NCBIUU_Cfam_GSD_1.0
Necab3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640171,830,208 - 171,844,773 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365616,906,494 - 6,918,647 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365616,905,111 - 6,919,400 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NECAB3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1737,160,434 - 37,177,278 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11737,160,431 - 37,177,272 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21742,101,645 - 42,116,052 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NECAB3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1237,950,024 - 37,967,314 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605088,914,587 - 88,931,846 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Necab3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248425,614,729 - 5,630,838 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248425,614,692 - 5,631,566 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in NECAB3
64 total Variants

1 to 10 of 88 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh38/hg38 20p12.2-q12(chr20:9811433-39316956)x3 copy number gain See cases [RCV000052999] Chr20:9811433..39316956 [GRCh38]
Chr20:9792081..37945599 [GRCh37]
Chr20:9740081..37379013 [NCBI36]
Chr20:20p12.2-q12
pathogenic
NM_005225.2(E2F1):c.1301C>T (p.Pro434Leu) single nucleotide variant Malignant melanoma [RCV000072588] Chr20:33676745 [GRCh38]
Chr20:32264551 [GRCh37]
Chr20:31728212 [NCBI36]
Chr20:20q11.22
not provided
NM_005225.2(E2F1):c.879C>T (p.Ile293=) single nucleotide variant Malignant melanoma [RCV000072589] Chr20:33677292 [GRCh38]
Chr20:32265098 [GRCh37]
Chr20:31728759 [NCBI36]
Chr20:20q11.22
not provided
GRCh38/hg38 20p13-q13.33(chr20:99557-64277321)x3 copy number gain See cases [RCV000135859] Chr20:99557..64277321 [GRCh38]
Chr20:80198..62908674 [GRCh37]
Chr20:28198..62379118 [NCBI36]
Chr20:20p13-q13.33
pathogenic
GRCh38/hg38 20q11.21-11.23(chr20:33432363-36821881)x1 copy number loss See cases [RCV000135440] Chr20:33432363..36821881 [GRCh38]
Chr20:32020169..35450284 [GRCh37]
Chr20:31483830..34883698 [NCBI36]
Chr20:20q11.21-11.23
pathogenic
GRCh38/hg38 20q11.21-11.23(chr20:32062768-35906606)x3 copy number gain See cases [RCV000141833] Chr20:32062768..35906606 [GRCh38]
Chr20:30650571..34494528 [GRCh37]
Chr20:30114232..33957942 [NCBI36]
Chr20:20q11.21-11.23
pathogenic
GRCh37/hg19 20p13-q13.33(chr20:61569-62915555)x3 copy number gain See cases [RCV000510832] Chr20:61569..62915555 [GRCh37]
Chr20:20p13-q13.33
pathogenic
NM_001024675.2(ACTL10):c.185C>T (p.Ala62Val) single nucleotide variant not specified [RCV004302580] Chr20:33667682 [GRCh38]
Chr20:32255488 [GRCh37]
Chr20:20q11.22
uncertain significance
GRCh37/hg19 20p13-q13.33(chr20:61569-62915555) copy number gain See cases [RCV000512450] Chr20:61569..62915555 [GRCh37]
Chr20:20p13-q13.33
pathogenic
NC_000020.10:g.(?_31996293)_(33761838_?)del deletion Long QT syndrome [RCV000708204] Chr20:31996293..33761838 [GRCh37]
Chr20:20q11.21-11.22
uncertain significance
1 to 10 of 88 rows

Predicted Target Of
Summary Value
Count of predictions:8015
Count of miRNA genes:1112
Interacting mature miRNAs:1422
Transcripts:ENST00000246190, ENST00000375238, ENST00000439478, ENST00000463246, ENST00000473892, ENST00000477778, ENST00000478237, ENST00000480994, ENST00000483813, ENST00000484824, ENST00000485399, ENST00000485976, ENST00000488489, ENST00000493590, ENST00000494174, ENST00000498353, ENST00000606106, ENST00000606525, ENST00000606690, ENST00000606699, ENST00000607055, ENST00000607805
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

RH12699  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372032,245,001 - 32,245,128UniSTSGRCh37
Build 362031,708,662 - 31,708,789RGDNCBI36
Celera2028,998,033 - 28,998,160RGD
Cytogenetic Map20q11.22UniSTS
HuRef2029,031,098 - 29,031,225UniSTS
GeneMap99-GB4 RH Map20194.28UniSTS
NCBI RH Map20279.4UniSTS
PMC344741P1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372032,263,516 - 32,263,912UniSTSGRCh37
Build 362031,727,177 - 31,727,573RGDNCBI36
Celera2029,016,548 - 29,016,944RGD
Cytogenetic Map20q11.2UniSTS
Cytogenetic Map20q11.22UniSTS
HuRef2029,049,490 - 29,049,886UniSTS
A006D04  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372032,244,977 - 32,245,135UniSTSGRCh37
Build 362031,708,638 - 31,708,796RGDNCBI36
Celera2028,998,009 - 28,998,167RGD
Cytogenetic Map20q11.22UniSTS
HuRef2029,031,074 - 29,031,232UniSTS
GeneMap99-GB4 RH Map20192.65UniSTS
NCBI RH Map20279.4UniSTS
AF021113  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372032,251,392 - 32,251,581UniSTSGRCh37
Build 362031,715,053 - 31,715,242RGDNCBI36
Celera2029,004,424 - 29,004,613RGD
Cytogenetic Map20q11.22UniSTS
HuRef2029,037,489 - 29,037,678UniSTS
RH78379  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372032,263,555 - 32,263,708UniSTSGRCh37
Build 362031,727,216 - 31,727,369RGDNCBI36
Celera2029,016,587 - 29,016,740RGD
Cytogenetic Map20q11.2UniSTS
Cytogenetic Map20q11.22UniSTS
HuRef2029,049,529 - 29,049,682UniSTS
GeneMap99-GB4 RH Map20194.39UniSTS
NCBI RH Map20289.8UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2253 4974 1726 2351 6 624 1948 465 2270 7303 6469 53 3734 1 852 1744 1617 175 1


1 to 30 of 32 rows
RefSeq Transcripts NM_031231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_031232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005260510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011528991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011528992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017028015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017028016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047440369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047440370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054323826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054323827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054323828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054323829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054323830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054323831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002958502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB039947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF193759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF409141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK023706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK124388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK291895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK309285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL121906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL519842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC047673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ212085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ431858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD580591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 32 rows

Ensembl Acc Id: ENST00000246190   ⟹   ENSP00000246190
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2033,657,087 - 33,674,428 (-)Ensembl
Ensembl Acc Id: ENST00000375238   ⟹   ENSP00000364386
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2033,657,087 - 33,674,463 (-)Ensembl
Ensembl Acc Id: ENST00000439478   ⟹   ENSP00000392064
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2033,658,523 - 33,674,409 (-)Ensembl
Ensembl Acc Id: ENST00000463246
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2033,657,945 - 33,662,184 (-)Ensembl
Ensembl Acc Id: ENST00000473892   ⟹   ENSP00000476165
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2033,669,143 - 33,670,765 (-)Ensembl
Ensembl Acc Id: ENST00000477778
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2033,657,087 - 33,659,547 (-)Ensembl
Ensembl Acc Id: ENST00000478237
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2033,657,730 - 33,662,237 (-)Ensembl
Ensembl Acc Id: ENST00000480994   ⟹   ENSP00000475834
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2033,657,962 - 33,666,659 (-)Ensembl
Ensembl Acc Id: ENST00000483813
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2033,657,564 - 33,662,419 (-)Ensembl
Ensembl Acc Id: ENST00000484824
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2033,669,448 - 33,674,420 (-)Ensembl
Ensembl Acc Id: ENST00000485399   ⟹   ENSP00000475369
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2033,657,637 - 33,674,389 (-)Ensembl
Ensembl Acc Id: ENST00000485976
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2033,657,677 - 33,663,719 (-)Ensembl
Ensembl Acc Id: ENST00000488489   ⟹   ENSP00000475938
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2033,657,088 - 33,674,420 (-)Ensembl
Ensembl Acc Id: ENST00000493590   ⟹   ENSP00000475755
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2033,659,885 - 33,674,366 (-)Ensembl
Ensembl Acc Id: ENST00000494174
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2033,657,757 - 33,669,428 (-)Ensembl
Ensembl Acc Id: ENST00000498353
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2033,659,659 - 33,662,423 (-)Ensembl
Ensembl Acc Id: ENST00000606106
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2033,659,927 - 33,666,702 (-)Ensembl
Ensembl Acc Id: ENST00000606525
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2033,657,088 - 33,662,778 (-)Ensembl
Ensembl Acc Id: ENST00000606690   ⟹   ENSP00000475420
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2033,658,480 - 33,674,359 (-)Ensembl
Ensembl Acc Id: ENST00000606699
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2033,660,251 - 33,674,420 (-)Ensembl
Ensembl Acc Id: ENST00000607055
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2033,672,034 - 33,674,388 (-)Ensembl
Ensembl Acc Id: ENST00000607805   ⟹   ENSP00000476044
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2033,658,527 - 33,674,408 (-)Ensembl
RefSeq Acc Id: NM_031231   ⟹   NP_112508
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382033,657,087 - 33,674,428 (-)NCBI
GRCh372032,244,893 - 32,262,264 (-)RGD
Build 362031,708,554 - 31,725,925 (-)NCBI Archive
Celera2028,997,925 - 29,015,296 (-)RGD
HuRef2029,030,990 - 29,048,237 (-)ENTREZGENE
CHM1_12032,145,985 - 32,163,356 (-)NCBI
T2T-CHM13v2.02035,383,618 - 35,400,959 (-)NCBI
Sequence:
RefSeq Acc Id: NM_031232   ⟹   NP_112509
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382033,657,087 - 33,674,428 (-)NCBI
GRCh372032,244,893 - 32,262,264 (-)RGD
Build 362031,708,554 - 31,725,925 (-)NCBI Archive
Celera2028,997,925 - 29,015,296 (-)RGD
HuRef2029,030,990 - 29,048,237 (-)ENTREZGENE
CHM1_12032,145,985 - 32,163,356 (-)NCBI
T2T-CHM13v2.02035,383,618 - 35,400,959 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005260510   ⟹   XP_005260567
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382033,657,087 - 33,674,428 (-)NCBI
GRCh372032,244,893 - 32,262,264 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011528991   ⟹   XP_011527293
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382033,657,087 - 33,663,716 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011528992   ⟹   XP_011527294
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382033,659,915 - 33,674,428 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017028016   ⟹   XP_016883505
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382033,657,087 - 33,662,181 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047440369   ⟹   XP_047296325
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382033,657,087 - 33,675,348 (-)NCBI
RefSeq Acc Id: XM_047440370   ⟹   XP_047296326
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382033,657,087 - 33,675,348 (-)NCBI
RefSeq Acc Id: XM_054323826   ⟹   XP_054179801
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02035,383,618 - 35,400,959 (-)NCBI
RefSeq Acc Id: XM_054323827   ⟹   XP_054179802
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02035,383,618 - 35,401,879 (-)NCBI
RefSeq Acc Id: XM_054323828   ⟹   XP_054179803
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02035,383,618 - 35,401,879 (-)NCBI
RefSeq Acc Id: XM_054323829   ⟹   XP_054179804
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02035,383,618 - 35,388,867 (-)NCBI
RefSeq Acc Id: XM_054323830   ⟹   XP_054179805
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02035,383,618 - 35,388,712 (-)NCBI
RefSeq Acc Id: XM_054323831   ⟹   XP_054179806
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02035,386,453 - 35,400,959 (-)NCBI
1 to 30 of 35 rows
Protein RefSeqs NP_112508 (Get FASTA)   NCBI Sequence Viewer  
  NP_112509 (Get FASTA)   NCBI Sequence Viewer  
  XP_005260567 (Get FASTA)   NCBI Sequence Viewer  
  XP_011527293 (Get FASTA)   NCBI Sequence Viewer  
  XP_011527294 (Get FASTA)   NCBI Sequence Viewer  
  XP_016883505 (Get FASTA)   NCBI Sequence Viewer  
  XP_047296325 (Get FASTA)   NCBI Sequence Viewer  
  XP_047296326 (Get FASTA)   NCBI Sequence Viewer  
  XP_054179801 (Get FASTA)   NCBI Sequence Viewer  
  XP_054179802 (Get FASTA)   NCBI Sequence Viewer  
  XP_054179803 (Get FASTA)   NCBI Sequence Viewer  
  XP_054179804 (Get FASTA)   NCBI Sequence Viewer  
  XP_054179805 (Get FASTA)   NCBI Sequence Viewer  
  XP_054179806 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAG28415 (Get FASTA)   NCBI Sequence Viewer  
  AAH47673 (Get FASTA)   NCBI Sequence Viewer  
  AAL01118 (Get FASTA)   NCBI Sequence Viewer  
  BAB14649 (Get FASTA)   NCBI Sequence Viewer  
  BAB16413 (Get FASTA)   NCBI Sequence Viewer  
  BAF84584 (Get FASTA)   NCBI Sequence Viewer  
  EAW76301 (Get FASTA)   NCBI Sequence Viewer  
  EAW76302 (Get FASTA)   NCBI Sequence Viewer  
  EAW76303 (Get FASTA)   NCBI Sequence Viewer  
  EAW76304 (Get FASTA)   NCBI Sequence Viewer  
  EAW76305 (Get FASTA)   NCBI Sequence Viewer  
  EAW76306 (Get FASTA)   NCBI Sequence Viewer  
  EAW76307 (Get FASTA)   NCBI Sequence Viewer  
  EAW76308 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000246190
  ENSP00000246190.6
1 to 30 of 35 rows
1 to 5 of 24 rows
1 to 5 of 24 rows
RefSeq Acc Id: NP_112509   ⟸   NM_031232
- Peptide Label: isoform 2
- UniProtKB: Q9HBW7 (UniProtKB/Swiss-Prot),   Q9H8G8 (UniProtKB/Swiss-Prot),   Q9H433 (UniProtKB/Swiss-Prot),   Q86VV1 (UniProtKB/Swiss-Prot),   Q5JWF7 (UniProtKB/Swiss-Prot),   Q5JWF6 (UniProtKB/Swiss-Prot),   Q5JWF5 (UniProtKB/Swiss-Prot),   E1P5N2 (UniProtKB/Swiss-Prot),   A8K780 (UniProtKB/Swiss-Prot),   Q9HCQ9 (UniProtKB/Swiss-Prot),   Q96P71 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_112508   ⟸   NM_031231
- Peptide Label: isoform 1
- UniProtKB: U3KQ06 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005260567   ⟸   XM_005260510
- Peptide Label: isoform X1
- UniProtKB: U3KQ06 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011527293   ⟸   XM_011528991
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_011527294   ⟸   XM_011528992
- Peptide Label: isoform X5
- UniProtKB: U3KPZ3 (UniProtKB/TrEMBL)
- Sequence:
ABM   EF-hand

Name Modeler Protein Id AA Range Protein Structure
AF-Q96P71-F1-model_v2 AlphaFold Q96P71 1-396 view protein structure

RGD ID:6798864
Promoter ID:HG_KWN:39090
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:HeLa_S3,   K562
Transcripts:OTTHUMT00000078716
Position:
Human AssemblyChrPosition (strand)Source
Build 362031,710,821 - 31,711,972 (-)MPROMDB
RGD ID:6798866
Promoter ID:HG_KWN:39091
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:OTTHUMT00000078721,   OTTHUMT00000078722,   OTTHUMT00000078727,   UC002WZL.1
Position:
Human AssemblyChrPosition (strand)Source
Build 362031,713,671 - 31,715,237 (-)MPROMDB
RGD ID:6798869
Promoter ID:HG_KWN:39093
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   Jurkat,   K562,   Lymphoblastoid
Transcripts:OTTHUMT00000078728
Position:
Human AssemblyChrPosition (strand)Source
Build 362031,715,001 - 31,716,147 (-)MPROMDB
RGD ID:6798865
Promoter ID:HG_KWN:39094
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:OTTHUMT00000078720
Position:
Human AssemblyChrPosition (strand)Source
Build 362031,718,301 - 31,719,037 (-)MPROMDB
RGD ID:6798863
Promoter ID:HG_KWN:39095
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562,   Lymphoblastoid
Transcripts:OTTHUMT00000078715
Position:
Human AssemblyChrPosition (strand)Source
Build 362031,720,536 - 31,721,777 (-)MPROMDB
RGD ID:6799202
Promoter ID:HG_KWN:39097
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_031232,   OTTHUMT00000078717,   OTTHUMT00000078718,   OTTHUMT00000078725,   OTTHUMT00000078726,   OTTHUMT00000078730,   UC002WZO.2,   UC002WZP.2,   UC002WZQ.2,   UC002WZR.2,   UC010GEO.1
Position:
Human AssemblyChrPosition (strand)Source
Build 362031,725,901 - 31,726,487 (-)MPROMDB
RGD ID:13206703
Promoter ID:EPDNEW_H26932
Type:initiation region
Name:NECAB3_1
Description:N-terminal EF-hand calcium binding protein 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh382033,674,428 - 33,674,488EPDNEW


1 to 40 of 63 rows
Database
Acc Id
Source(s)
COSMIC NECAB3 COSMIC
Ensembl Genes ENSG00000125967 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000246190 ENTREZGENE
  ENST00000246190.11 UniProtKB/Swiss-Prot
  ENST00000375238 ENTREZGENE
  ENST00000375238.8 UniProtKB/Swiss-Prot
  ENST00000439478 ENTREZGENE
  ENST00000485399 ENTREZGENE
Gene3D-CATH 3.30.70.100 UniProtKB/Swiss-Prot
  EF-hand UniProtKB/Swiss-Prot
GTEx ENSG00000125967 GTEx
HGNC ID HGNC:15851 ENTREZGENE
Human Proteome Map NECAB3 Human Proteome Map
InterPro ABM_dom UniProtKB/Swiss-Prot
  Dimeric_a/b-barrel UniProtKB/Swiss-Prot
  EF-hand-dom_pair UniProtKB/Swiss-Prot
  EF_Hand_1_Ca_BS UniProtKB/Swiss-Prot
  EF_hand_dom UniProtKB/Swiss-Prot
  NECAB1/2/3 UniProtKB/Swiss-Prot
KEGG Report hsa:63941 UniProtKB/Swiss-Prot
NCBI Gene 63941 ENTREZGENE
OMIM 612478 OMIM
PANTHER N-TERMINAL EF-HAND CALCIUM-BINDING PROTEIN 3 UniProtKB/Swiss-Prot
  PTHR12178 UniProtKB/Swiss-Prot
Pfam ABM UniProtKB/Swiss-Prot
  EF-hand_5 UniProtKB/Swiss-Prot
PharmGKB PA24871 PharmGKB
PROSITE ABM UniProtKB/Swiss-Prot
  EF_HAND_1 UniProtKB/Swiss-Prot
  EF_HAND_2 UniProtKB/Swiss-Prot
SMART EFh UniProtKB/Swiss-Prot
Superfamily-SCOP SSF47473 UniProtKB/Swiss-Prot
  SSF54909 UniProtKB/Swiss-Prot
UniProt A8K780 ENTREZGENE
  E1P5N2 ENTREZGENE
  NECA3_HUMAN UniProtKB/Swiss-Prot
  Q5JWF5 ENTREZGENE
  Q5JWF6 ENTREZGENE
  Q5JWF7 ENTREZGENE
  Q86VV1 ENTREZGENE
1 to 40 of 63 rows