Rnls (renalase, FAD-dependent amine oxidase) - Rat Genome Database

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Gene: Rnls (renalase, FAD-dependent amine oxidase) Mus musculus
Analyze
Symbol: Rnls
Name: renalase, FAD-dependent amine oxidase
RGD ID: 1320338
MGI Page MGI
Description: Enables oxidoreductase activity. Acts upstream of or within several processes, including catecholamine metabolic process; phosphate ion homeostasis; and response to norepinephrine. Predicted to be located in extracellular space. Predicted to be active in extracellular region. Human ortholog(s) of this gene implicated in essential hypertension and hypertension. Orthologous to human RNLS (renalase, FAD dependent amine oxidase).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 6530404N21Rik; AI452315; alpha-NAD(P)H oxidase/anomerase; AW060440; C10orf59; MAO-C; mMAO-C; monoamine oxidase-C; renalase
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
NCBI Annotation Information: Note: Genetic polymorphisms result in both protein coding and non-coding alleles of this gene.
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391933,115,140 - 33,369,695 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1933,115,147 - 33,369,665 (-)EnsemblGRCm39 Ensembl
GRCm381933,137,740 - 33,392,295 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1933,137,747 - 33,392,295 (-)EnsemblGRCm38mm10GRCm38
MGSCv371933,212,234 - 33,466,785 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361933,203,744 - 33,458,836 (-)NCBIMGSCv36mm8
Celera1933,919,313 - 34,173,994 (-)NCBICelera
Cytogenetic Map19C1NCBI
cM Map1929.08NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Renalase gene polymorphisms in patients with type 2 diabetes, hypertension and stroke. Buraczynska M, etal., Neuromolecular Med. 2011 Dec;13(4):321-7. doi: 10.1007/s12017-011-8158-6. Epub 2011 Oct 2.
2. Renalase deficiency in heart failure model of rats--a potential mechanism underlying circulating norepinephrine accumulation. Gu R, etal., PLoS One. 2011 Jan 31;6(1):e14633. doi: 10.1371/journal.pone.0014633.
3. Lisinopril Protects Against the Adriamycin Nephropathy and Reverses the Renalase Reduction: Potential Role of Renalase in Adriamycin Nephropathy. Han P, etal., Kidney Blood Press Res. 2013 Sep 5;37(4-5):295-304.
4. Renalase protects against ischemic AKI. Lee HT, etal., J Am Soc Nephrol. 2013 Feb;24(3):445-55. doi: 10.1681/ASN.2012090943. Epub 2013 Feb 7.
5. Catecholamines regulate the activity, secretion, and synthesis of renalase. Li G, etal., Circulation. 2008 Mar 11;117(10):1277-82. doi: 10.1161/CIRCULATIONAHA.107.732032. Epub 2008 Feb 25.
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Polymorphism of the renalase gene in end-stage renal disease patients affected by hypertension. Stec A, etal., Nephrol Dial Transplant. 2012 Nov;27(11):4162-6. doi: 10.1093/ndt/gfr293. Epub 2011 May 26.
10. Renalase deficiency aggravates ischemic myocardial damage. Wu Y, etal., Kidney Int. 2011 Apr;79(8):853-60. doi: 10.1038/ki.2010.488. Epub 2010 Dec 22.
11. Renalase is a novel, soluble monoamine oxidase that regulates cardiac function and blood pressure. Xu J, etal., J Clin Invest. 2005 May;115(5):1275-80. Epub 2005 Apr 7.
12. Renalase gene is a novel susceptibility gene for essential hypertension: a two-stage association study in northern Han Chinese population. Zhao Q, etal., J Mol Med (Berl). 2007 Aug;85(8):877-85. Epub 2007 Jan 10.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11125038   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073   PMID:17846919  
PMID:21677750   PMID:21873635   PMID:23056310   PMID:23863468   PMID:24511138   PMID:25295465   PMID:25411385   PMID:25497549   PMID:27197188   PMID:29042438   PMID:32741114   PMID:33495844  
PMID:35219026   PMID:36588579   PMID:37216639   PMID:38230609   PMID:38355793  


Genomics

Comparative Map Data
Rnls
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391933,115,140 - 33,369,695 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1933,115,147 - 33,369,665 (-)EnsemblGRCm39 Ensembl
GRCm381933,137,740 - 33,392,295 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1933,137,747 - 33,392,295 (-)EnsemblGRCm38mm10GRCm38
MGSCv371933,212,234 - 33,466,785 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361933,203,744 - 33,458,836 (-)NCBIMGSCv36mm8
Celera1933,919,313 - 34,173,994 (-)NCBICelera
Cytogenetic Map19C1NCBI
cM Map1929.08NCBI
RNLS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381088,171,523 - 88,583,318 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1088,273,864 - 88,584,530 (-)EnsemblGRCh38hg38GRCh38
GRCh371090,033,619 - 90,343,075 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361090,023,601 - 90,332,988 (-)NCBINCBI36Build 36hg18NCBI36
Build 341090,023,600 - 90,332,988NCBI
Celera1083,780,492 - 84,089,897 (-)NCBICelera
Cytogenetic Map10q23.31NCBI
HuRef1083,668,375 - 83,977,653 (-)NCBIHuRef
CHM1_11090,315,752 - 90,625,158 (-)NCBICHM1_1
T2T-CHM13v2.01089,050,656 - 89,467,392 (-)NCBIT2T-CHM13v2.0
Rnls
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81240,450,702 - 240,723,472 (-)NCBIGRCr8
mRatBN7.21231,037,481 - 231,309,855 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1231,037,486 - 231,309,823 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1239,414,353 - 239,688,126 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01246,344,061 - 246,617,558 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01239,182,149 - 239,455,647 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01251,828,285 - 252,101,963 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1251,828,290 - 252,100,759 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01259,052,388 - 259,324,901 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41237,364,578 - 237,639,800 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11237,528,600 - 237,803,823 (-)NCBI
Celera1228,151,441 - 228,423,443 (-)NCBICelera
Cytogenetic Map1q52NCBI
Rnls
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554254,368,620 - 4,667,947 (+)NCBIChiLan1.0ChiLan1.0
RNLS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28100,195,947 - 100,598,256 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110100,201,262 - 100,603,822 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01084,996,999 - 85,304,240 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11088,502,588 - 88,809,439 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1088,503,683 - 88,808,990 (-)Ensemblpanpan1.1panPan2
RNLS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12638,137,662 - 38,413,666 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2638,083,371 - 38,414,033 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2637,955,732 - 38,233,014 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02639,670,571 - 40,000,185 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2639,702,516 - 40,000,302 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12637,574,898 - 37,840,447 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02637,159,099 - 37,435,881 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02638,428,192 - 38,705,871 (-)NCBIUU_Cfam_GSD_1.0
Rnls
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721377,744,737 - 78,131,700 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936735659,826 - 1,048,135 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNLS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14100,317,625 - 100,605,063 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114100,312,592 - 100,604,953 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214109,298,823 - 109,589,104 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RNLS
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1981,725,115 - 82,029,361 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604842,407,027 - 42,707,316 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rnls
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462479114,542,625 - 14,873,393 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rnls
7694 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:152
Count of miRNA genes:68
Interacting mature miRNAs:72
Transcripts:ENSMUST00000096114, ENSMUST00000163093
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13506250Renmq1_mrenal mercury accumulation QTL 1 (mouse)192738559461385705Mouse
10412251Mnp_mmodifier of Niemann Pick type C1 (mouse)Not determined192023431454234461Mouse
11039522Tbbr4_mTrypanosoma brucei brucei response 4 (mouse)19531332639313470Mouse
1301336Alcp23_malcohol preference locus 23 (mouse)Not determined191591260749912719Mouse
1558876W3q14_mweight 3 weeks QTL 14 (mouse)Not determined192231332653911504Mouse
1302019Pgia23_mproteoglycan induced arthritis 23 (mouse)Not determined19978745343787602Mouse
1301633Alcp24_malcohol preference locus 24 (mouse)Not determined191591260749912719Mouse
14928311Manh85_mmandible shape 85 (mouse)191191478945914789Mouse
1357568Tgct4_mtesticular germ cell tumor 4 (mouse)Not determined192777198535295381Mouse
1301451Ath16_matherosclerosis 16 (mouse)Not determined192542691759427005Mouse
1300683Fembm7_mfemoral bone morphometry 7 (mouse)Not determined193014122461420004Mouse
4141659Pbwg20_mpostnatal body weight growth 20 (mouse)Not determined192137870555378928Mouse
1301942Pas13_mpulmonary adenoma susceptibility 13 (mouse)Not determined193014123161420004Mouse
10413881Moe2_mmodifier of epilepsy 2 (mouse)191492301648923138Mouse
1302004Lfp2_mlong free running period 2 (mouse)Not determined191829516252295381Mouse
1300923Bits4_mbitterness sensitivity 4 (mouse)Not determined19332321637323348Mouse
12790634Ebm1_mEpidermolysis Bullosa modifier 1 (mouse)192498843958988439Mouse
1300856Nobq2_mNew Zealand obese QTL 2 (mouse)Not determined193089788061420004Mouse
4141138Femwf11_mfemur work to failure 11 (mouse)Not determined2814034861420004Mouse
1301410Cd8mts6_mCD8 memory T cell subset 6 (mouse)Not determined193014123161420004Mouse
4142343Moen2_mmodifier of engrailed QTL 2 (mouse)Not determined192023431454234461Mouse
1302123Tlsr8_mthymic lymphoma suppressor region 8 (mouse)Not determined192513600242388916Mouse
1300904Chab5_mcholesterol absorption 5 (mouse)Not determined19165376435653927Mouse
26884385Skwq14_mskull length QTL 14, 16 week (mouse)19325000035877400Mouse
1301800Faq10_mfluctuating asymmetry QTL 10 (mouse)Not determined19332321637323348Mouse
1300591Pas3_mpulmonary adenoma susceptibility 3 (mouse)Not determined19332321637323348Mouse
1302063Eae19_mexperimental allergic encephalomyelitis 19 (mouse)Not determined191829516252295381Mouse
1302126Skull26_mskull morphology 26 (mouse)Not determined19332321637323348Mouse
1301741Lith2_mlithogenic gene 2 (mouse)Not determined193299215861420004Mouse
1301228Iba4_minduction of brown adipocytes 4 (mouse)Not determined19930571543305821Mouse

Markers in Region
D19Mit81  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381933,297,097 - 33,297,197UniSTSGRCm38
MGSCv371933,371,587 - 33,371,687UniSTSGRCm37
Celera1934,078,385 - 34,078,485UniSTS
Cytogenetic Map19C1UniSTS
cM Map1933.0UniSTS
Whitehead Genetic1924.0UniSTS
Whitehead/MRC_RH19327.67UniSTS
Whitehead_YAC19 UniSTS
AI452315  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381933,392,290 - 33,392,388UniSTSGRCm38
MGSCv371933,466,780 - 33,466,878UniSTSGRCm37
Celera1934,173,989 - 34,174,087UniSTS
Cytogenetic Map19C1UniSTS
Whitehead/MRC_RH19327.67UniSTS
Whitehead/MRC_RH19329.08UniSTS
UniSTS:224463  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381933,254,542 - 33,254,718UniSTSGRCm38
MGSCv371933,329,032 - 33,329,208UniSTSGRCm37
Celera1934,036,064 - 34,036,240UniSTS
Cytogenetic Map19C1UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000096114   ⟹   ENSMUSP00000093825
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1933,115,147 - 33,369,665 (-)Ensembl
GRCm38.p6 Ensembl1933,137,747 - 33,392,265 (-)Ensembl
Ensembl Acc Id: ENSMUST00000163093   ⟹   ENSMUSP00000127592
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1933,115,147 - 33,369,695 (-)Ensembl
GRCm38.p6 Ensembl1933,137,747 - 33,392,295 (-)Ensembl
RefSeq Acc Id: NR_160911
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391933,115,140 - 33,369,695 (-)NCBI
GRCm381933,137,740 - 33,392,295 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001355762 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein A7RDN6 (Get FASTA)   NCBI Sequence Viewer  
  AAH52355 (Get FASTA)   NCBI Sequence Viewer  
  ABG82016 (Get FASTA)   NCBI Sequence Viewer  
  BAE41716 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000093825
Ensembl Acc Id: ENSMUSP00000127592   ⟸   ENSMUST00000163093
Ensembl Acc Id: ENSMUSP00000093825   ⟸   ENSMUST00000096114
Protein Domains
Amine oxidase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A7RDN6-F1-model_v2 AlphaFold A7RDN6 1-342 view protein structure

Promoters
RGD ID:13679280
Promoter ID:EPDNEW_M23789
Type:initiation region
Name:Rnls_2
Description:Mus musculus renalase, FAD-dependent amine oxidase , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M23790  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381933,392,101 - 33,392,161EPDNEW
RGD ID:13679282
Promoter ID:EPDNEW_M23790
Type:initiation region
Name:Rnls_1
Description:Mus musculus renalase, FAD-dependent amine oxidase , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M23789  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381933,392,285 - 33,392,345EPDNEW
RGD ID:6830365
Promoter ID:MM_KWN:26866
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour
Transcripts:NM_001146342,   NM_001167818,   OTTMUST00000082602
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361933,466,326 - 33,466,826 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1915045 AgrOrtholog
Ensembl Genes ENSMUSG00000071573 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000096114 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 3.50.50.60 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.90.660.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Amino_oxidase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FAD/NAD-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNLS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1915045 ENTREZGENE
NCBI Gene 67795 ENTREZGENE
PANTHER PTHR23357 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RENALASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Amino_oxidase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NAD_binding_8 UniProtKB/Swiss-Prot
PhenoGen Rnls PhenoGen
Superfamily-SCOP SSF51905 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0R4J156_MOUSE UniProtKB/TrEMBL
  A7RDN6 ENTREZGENE
  Q3TD88 ENTREZGENE
  Q80W75 ENTREZGENE
  RNLS_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q3TD88 UniProtKB/Swiss-Prot
  Q80W75 UniProtKB/Swiss-Prot