SESN3 (sestrin 3) - Rat Genome Database

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Gene: SESN3 (sestrin 3) Homo sapiens
Analyze
Symbol: SESN3
Name: sestrin 3
RGD ID: 1319828
HGNC Page HGNC:23060
Description: Predicted to enable L-leucine binding activity and oxidoreductase activity, acting on peroxide as acceptor. Involved in cellular response to amino acid starvation; cellular response to glucose starvation; and negative regulation of TORC1 signaling. Located in GATOR2 complex and cytoplasm.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: MGC29667; SEST3; sestrin-3
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381195,165,513 - 95,232,475 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1195,165,513 - 95,232,541 (-)EnsemblGRCh38hg38GRCh38
GRCh371194,898,677 - 94,965,639 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361194,545,781 - 94,603,894 (-)NCBINCBI36Build 36hg18NCBI36
Build 341194,545,780 - 94,603,894NCBI
Celera1192,194,063 - 92,252,174 (-)NCBICelera
Cytogenetic Map11q21NCBI
HuRef1190,963,643 - 91,030,664 (-)NCBIHuRef
CHM1_11194,781,781 - 94,848,813 (-)NCBICHM1_1
T2T-CHM13v2.01195,172,632 - 95,239,638 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SESN3Humanataxia telangiectasia  IAGPRGD:1272337728554872ClinVar Annotator: match by term: Ataxia-telangiectasia syndromeClinVarPMID:23807571|PMID:25614872|PMID:28492532
SESN3Humanintellectual disability  IAGPRGD:427234668554872ClinVar Annotator: match by term: Intellectual disabilityClinVar 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SESN3HumanProstatic Neoplasms  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:24763052

1 to 20 of 111 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SESN3Human(+)-catechin multiple interactionsEXP 6480464[Catechin co-treated with Grape Seed Proanthocyanidins] results in decreased expression of SESN3 mRNACTDPMID:24763279
SESN3Human(-)-epigallocatechin 3-gallate increases expressionEXP 6480464epigallocatechin gallate results in increased expression of SESN3 mRNACTDPMID:35701726
SESN3Human(1->4)-beta-D-glucan multiple interactionsISORGD:15512736480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of SESN3 mRNACTDPMID:36331819
SESN3Human1,1-dichloroethene increases expressionISORGD:15512736480464vinylidene chloride results in increased expression of SESN3 mRNACTDPMID:26682919
SESN3Human1,2-dimethylhydrazine decreases expressionISORGD:155127364804641,2-Dimethylhydrazine results in decreased expression of SESN3 mRNACTDPMID:22206623
SESN3Human17alpha-ethynylestradiol increases expressionISORGD:13094706480464Ethinyl Estradiol results in increased expression of SESN3 mRNACTDPMID:29097150
SESN3Human17beta-estradiol multiple interactionsEXP 6480464[Estradiol co-treated with Progesterone] results in decreased expression of SESN3 mRNA; [Estradiol co-treated with TGFB1 more ...CTDPMID:20660070|PMID:30165855
SESN3Human17beta-estradiol decreases expressionEXP 6480464Estradiol results in decreased expression of SESN3 mRNACTDPMID:31614463
SESN3Human17beta-estradiol multiple interactionsISORGD:13094706480464[bisphenol A co-treated with Estradiol] results in decreased expression of SESN3 mRNACTDPMID:26496021
SESN3Human2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of SESN3 mRNACTDPMID:22298810
SESN3Human2,3,7,8-tetrachlorodibenzodioxine decreases expressionISORGD:13094706480464Tetrachlorodibenzodioxin results in decreased expression of SESN3 mRNACTDPMID:33387578
SESN3Human2,3,7,8-tetrachlorodibenzodioxine affects expressionISORGD:13094706480464Tetrachlorodibenzodioxin affects the expression of SESN3 mRNACTDPMID:34747641
SESN3Human2,3,7,8-tetrachlorodibenzodioxine affects expressionISORGD:15512736480464Tetrachlorodibenzodioxin affects the expression of SESN3 mRNACTDPMID:21570461
SESN3Human2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of SESN3 mRNACTDPMID:20106945|PMID:21632981
SESN3Human2,3,7,8-tetrachlorodibenzodioxine increases expressionISORGD:13094706480464Tetrachlorodibenzodioxin results in increased expression of SESN3 mRNACTDPMID:21215274
SESN3Human3-chloropropane-1,2-diol increases expressionISORGD:13094706480464alpha-Chlorohydrin results in increased expression of SESN3 mRNACTDPMID:28522335
SESN3Human4,4'-sulfonyldiphenol decreases expressionISORGD:15512736480464bisphenol S results in decreased expression of SESN3 mRNACTDPMID:39298647
SESN3Human4-hydroxyphenyl retinamide decreases expressionISORGD:15512736480464Fenretinide results in decreased expression of SESN3 mRNACTDPMID:28973697
SESN3Human8-Br-cAMP increases expressionEXP 64804648-Bromo Cyclic Adenosine Monophosphate results in increased expression of SESN3 mRNACTDPMID:20147733
SESN3Humanacetamide increases expressionISORGD:13094706480464acetamide results in increased expression of SESN3 mRNACTDPMID:31881176

1 to 20 of 111 rows

Biological Process
1 to 18 of 18 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SESN3Humancellular response to amino acid starvation involved_inIMP 150520179 PMID:25263562UniProtPMID:25263562
SESN3Humancellular response to amino acid stimulus involved_inIEAUniProtKB:Q9CYP7|ensembl:ENSMUSP00000146362150520179 EnsemblGO_REF:0000107
SESN3Humancellular response to glucose starvation involved_inIMP 150520179 PMID:25263562UniProtPMID:25263562
SESN3Humancellular response to L-leucine involved_inIBAFB:FBgn0034897|PANTHER:PTN000280005|UniProtKB:P58004150520179 GO_CentralGO_REF:0000033
SESN3Humancellular response to leucine starvation involved_inIBAFB:FBgn0034897|PANTHER:PTN000280005|UniProtKB:P58004150520179 GO_CentralGO_REF:0000033
SESN3Humanglucose homeostasis involved_inIEAUniProtKB:Q9CYP7|ensembl:ENSMUSP00000146362150520179 EnsemblGO_REF:0000107
SESN3Humanglucose homeostasis acts_upstream_of_or_withinISOMGI:26518749068941 PMID:22958918MGIPMID:22958918
SESN3Humannegative regulation of TORC1 signaling involved_inIMP 150520179 PMID:25263562UniProtPMID:25263562
SESN3Humannegative regulation of TORC1 signaling involved_inIBAFB:FBgn0034897|MGI:1922997|MGI:2155278|MGI:2651874|PANTHER:PTN000280005|UniProtKB:P58004|UniProtKB:P58005|UniProtKB:Q9Y6P5150520179 GO_CentralGO_REF:0000033
SESN3Humannegative regulation of TORC1 signaling involved_inIEAARBA:ARBA00026776150520179 UniProtGO_REF:0000117
SESN3Humannegative regulation of TORC1 signaling involved_inIEAUniProtKB:Q9CYP7|ensembl:ENSMUSP00000146362150520179 EnsemblGO_REF:0000107
SESN3Humanpositive regulation of macroautophagy involved_inIBAMGI:2651874|PANTHER:PTN000280005|UniProtKB:P58004|dictyBase:DDB_G0279427150520179 GO_CentralGO_REF:0000033
SESN3Humanregulation of insulin receptor signaling pathway involved_inIEAUniProtKB:Q9CYP7|ensembl:ENSMUSP00000146362150520179 EnsemblGO_REF:0000107
SESN3Humanregulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction acts_upstream_of_or_withinIEAUniProtKB:Q9CYP7|ensembl:ENSMUSP00000146362150520179 EnsemblGO_REF:0000107
SESN3Humanregulation of response to reactive oxygen species involved_inIEAInterPro:IPR006730150520179 InterProGO_REF:0000002
SESN3Humanresponse to insulin involved_inIEAUniProtKB:Q9CYP7|ensembl:ENSMUSP00000146362150520179 EnsemblGO_REF:0000107
SESN3Humanresponse to insulin acts_upstream_of_or_withinISOMGI:26518749068941 PMID:22958918MGIPMID:22958918
SESN3HumanTORC2 signaling involved_inIEAUniProtKB:Q9CYP7|ensembl:ENSMUSP00000146362150520179 EnsemblGO_REF:0000107
1 to 18 of 18 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SESN3Humancytoplasm located_inIEAUniProtKB-KW:KW-0963150520179 UniProtGO_REF:0000043
SESN3Humancytoplasm located_inIDA 150520179 PMID:25263562UniProtPMID:25263562
SESN3Humancytoplasm located_inIEAUniProtKB-SubCell:SL-0086150520179 UniProtGO_REF:0000044
SESN3HumanGATOR2 complex located_inIDA 150520179 PMID:25263562, PMID:26449471UniProtPMID:25263562|PMID:26449471
SESN3Humannucleus located_inIEAInterPro:IPR006730150520179 InterProGO_REF:0000002
SESN3HumanTORC2 complex part_ofISORGD:15512739068941 PMID:25377878UniProtPMID:25377878
SESN3HumanTORC2 complex located_inIEAUniProtKB:Q9CYP7|ensembl:ENSMUSP00000146362150520179 EnsemblGO_REF:0000107

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SESN3HumanL-leucine binding enablesIBAPANTHER:PTN000280005|UniProtKB:P58004|UniProtKB:Q9Y6P5150520179 GO_CentralGO_REF:0000033
SESN3Humanoxidoreductase activity enablesIEAUniProtKB-KW:KW-0560150520179 UniProtGO_REF:0000043
SESN3Humanoxidoreductase activity, acting on peroxide as acceptor enablesIBAPANTHER:PTN000280005|UniProtKB:P58004150520179 GO_CentralGO_REF:0000033
SESN3Humanprotein binding enablesIPIUniProtKB:Q96S15150520179 PMID:25263562, PMID:26449471IntActPMID:25263562|PMID:26449471

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SESN3Humanp53 signaling pathway   IEA 6907045 KEGGhsa:04115
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SESN3HumanIntellectual disability  IAGPRGD:427234668554872ClinVar Annotator: match by term: Intellectual disabilityClinVar 

#
Reference Title
Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:12477932   PMID:12607115   PMID:14702039   PMID:15489334   PMID:17510393   PMID:19061837   PMID:19322201   PMID:20379614   PMID:20412774   PMID:21873635   PMID:22349704   PMID:22958918  
PMID:23388456   PMID:24129397   PMID:24260131   PMID:24457600   PMID:24833709   PMID:25263562   PMID:25615886   PMID:26186194   PMID:26449471   PMID:27466818   PMID:27881463   PMID:28514442  
PMID:28869600   PMID:29191771   PMID:29220067   PMID:29966750   PMID:31073887   PMID:32626541   PMID:33082554   PMID:33961781   PMID:34409922   PMID:34979914   PMID:35256949   PMID:35914814  
PMID:37918578   PMID:39266717  



SESN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381195,165,513 - 95,232,475 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1195,165,513 - 95,232,541 (-)EnsemblGRCh38hg38GRCh38
GRCh371194,898,677 - 94,965,639 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361194,545,781 - 94,603,894 (-)NCBINCBI36Build 36hg18NCBI36
Build 341194,545,780 - 94,603,894NCBI
Celera1192,194,063 - 92,252,174 (-)NCBICelera
Cytogenetic Map11q21NCBI
HuRef1190,963,643 - 91,030,664 (-)NCBIHuRef
CHM1_11194,781,781 - 94,848,813 (-)NCBICHM1_1
T2T-CHM13v2.01195,172,632 - 95,239,638 (-)NCBIT2T-CHM13v2.0
Sesn3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39914,187,597 - 14,237,430 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl914,186,363 - 14,244,397 (+)EnsemblGRCm39 Ensembl
GRCm38914,276,301 - 14,326,134 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl914,275,067 - 14,333,101 (+)EnsemblGRCm38mm10GRCm38
MGSCv37914,080,745 - 14,130,578 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36914,026,802 - 14,076,531 (+)NCBIMGSCv36mm8
Celera911,556,960 - 11,606,787 (+)NCBICelera
Cytogenetic Map9A1NCBI
cM Map93.89NCBI
Sesn3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8819,415,307 - 19,470,943 (+)NCBIGRCr8
mRatBN7.2811,133,822 - 11,189,436 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl811,133,678 - 11,185,842 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx815,127,233 - 15,175,350 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0813,424,974 - 13,473,087 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0811,401,822 - 11,451,054 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0812,823,060 - 12,878,749 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl812,823,155 - 12,872,705 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0812,768,558 - 12,824,247 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4811,076,055 - 11,125,523 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1811,076,056 - 11,124,656 (+)NCBI
Celera812,629,794 - 12,679,054 (+)NCBICelera
Cytogenetic Map8q12NCBI
Sesn3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955412107,861 - 125,944 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955412100,335 - 125,395 (-)NCBIChiLan1.0ChiLan1.0
SESN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2996,024,992 - 96,091,563 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11197,116,421 - 97,183,065 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01190,184,571 - 90,249,825 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11193,707,191 - 93,773,762 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1193,714,916 - 93,773,679 (-)Ensemblpanpan1.1panPan2
SESN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1215,827,957 - 5,899,540 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl215,777,780 - 5,892,805 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha215,838,876 - 5,910,413 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0216,009,357 - 6,080,923 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl216,009,392 - 6,076,112 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1215,797,473 - 5,868,971 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0215,859,251 - 5,930,864 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0215,907,109 - 5,978,669 (+)NCBIUU_Cfam_GSD_1.0
Sesn3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494780,057,455 - 80,116,144 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367002,429,446 - 2,488,127 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367002,429,535 - 2,491,752 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SESN3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl927,207,236 - 27,298,628 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1927,207,239 - 27,279,205 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2931,044,963 - 31,076,106 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SESN3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1186,426,258 - 86,486,465 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl186,427,988 - 86,486,477 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604339,312,039 - 39,377,416 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sesn3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473539,866,097 - 39,929,614 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473539,859,414 - 39,930,642 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in SESN3
24 total Variants

1 to 10 of 50 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
NM_144665.4(SESN3):c.161C>G (p.Thr54Arg) single nucleotide variant not provided [RCV000729617] Chr11:95191585 [GRCh38]
Chr11:94924749 [GRCh37]
Chr11:11q21
uncertain significance
GRCh38/hg38 11q14.1-22.3(chr11:78232836-106779420)x1 copy number loss See cases [RCV000052710] Chr11:78232836..106779420 [GRCh38]
Chr11:77943882..106650146 [GRCh37]
Chr11:77621530..106155356 [NCBI36]
Chr11:11q14.1-22.3
pathogenic
GRCh38/hg38 11q14.1-22.2(chr11:85242847-102920097)x1 copy number loss See cases [RCV000052711] Chr11:85242847..102920097 [GRCh38]
Chr11:84953891..102738968 [GRCh37]
Chr11:84631539..102296037 [NCBI36]
Chr11:11q14.1-22.2
pathogenic
GRCh38/hg38 11q13.5-22.1(chr11:75941754-98357960)x1 copy number loss See cases [RCV000133838] Chr11:75941754..98357960 [GRCh38]
Chr11:75652798..98228688 [GRCh37]
Chr11:75330446..97733898 [NCBI36]
Chr11:11q13.5-22.1
pathogenic
GRCh38/hg38 11q21(chr11:94324282-96081666)x3 copy number gain See cases [RCV000134847] Chr11:94324282..96081666 [GRCh38]
Chr11:94057448..95814830 [GRCh37]
Chr11:93697096..95454478 [NCBI36]
Chr11:11q21
uncertain significance
GRCh38/hg38 11q14.3-22.3(chr11:91086659-109595582)x1 copy number loss See cases [RCV000138038] Chr11:91086659..109595582 [GRCh38]
Chr11:90819827..109466308 [GRCh37]
Chr11:90459475..108971518 [NCBI36]
Chr11:11q14.3-22.3
pathogenic
GRCh37/hg19 11q21(chr11:94696615-95528715)x3 copy number gain Breast ductal adenocarcinoma [RCV000207047] Chr11:94696615..95528715 [GRCh37]
Chr11:11q21
pathogenic|likely pathogenic|uncertain significance
GRCh37/hg19 11q14.1-21(chr11:80318996-96116221)x1 copy number loss See cases [RCV000446395] Chr11:80318996..96116221 [GRCh37]
Chr11:11q14.1-21
pathogenic
GRCh37/hg19 11q14.2-22.3(chr11:88152458-109414650)x1 copy number loss See cases [RCV000510457] Chr11:88152458..109414650 [GRCh37]
Chr11:11q14.2-22.3
pathogenic
GRCh37/hg19 11p15.5-q25(chr11:230616-134938470) copy number gain See cases [RCV000511729] Chr11:230616..134938470 [GRCh37]
Chr11:11p15.5-q25
pathogenic
1 to 10 of 50 rows

Predicted Target Of
Summary Value
Count of predictions:3142
Count of miRNA genes:1217
Interacting mature miRNAs:1525
Transcripts:ENST00000278499, ENST00000393234, ENST00000416495, ENST00000536441, ENST00000537480, ENST00000542176
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
407209456GWAS858432_Heosinophil count QTL GWAS858432 (human)5e-09eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)119516900795169008Human
596974701GWAS1094220_H2-O-methylascorbic acid measurement, sex interaction measurement QTL GWAS1094220 (human)0.0000052-O-methylascorbic acid measurement, sex interaction measurement119520355695203557Human
597132622GWAS1228696_H2-O-methylascorbic acid measurement, sex interaction measurement QTL GWAS1228696 (human)0.0000052-O-methylascorbic acid measurement, sex interaction measurement119520355695203557Human

RH46209  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371194,914,549 - 94,914,725UniSTSGRCh37
Build 361194,554,197 - 94,554,373RGDNCBI36
Celera1192,202,479 - 92,202,655RGD
Cytogenetic Map11q21UniSTS
HuRef1190,979,515 - 90,979,691UniSTS
GeneMap99-GB4 RH Map11318.3UniSTS
WI-16429  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371194,959,583 - 94,959,697UniSTSGRCh37
Build 361194,599,231 - 94,599,345RGDNCBI36
Celera1192,247,513 - 92,247,627RGD
Cytogenetic Map11q21UniSTS
HuRef1191,024,547 - 91,024,661UniSTS
GeneMap99-GB4 RH Map11317.37UniSTS
Whitehead-RH Map11417.5UniSTS
D11S2315E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371194,899,936 - 94,900,009UniSTSGRCh37
Build 361194,539,584 - 94,539,657RGDNCBI36
Celera1192,187,866 - 92,187,939RGD
Cytogenetic Map11q21UniSTS
HuRef1190,964,901 - 90,964,974UniSTS
GeneMap99-GB4 RH Map11319.17UniSTS
NCBI RH Map11794.1UniSTS
D11S361  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371194,960,201 - 94,960,385UniSTSGRCh37
Build 361194,599,849 - 94,600,033RGDNCBI36
Celera1192,248,131 - 92,248,315RGD
Cytogenetic Map11q21UniSTS
HuRef1191,025,165 - 91,025,348UniSTS
SHGC-111463  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371194,952,122 - 94,952,372UniSTSGRCh37
Build 361194,591,770 - 94,592,020RGDNCBI36
Celera1192,240,052 - 92,240,302RGD
Cytogenetic Map11q21UniSTS
HuRef1191,017,088 - 91,017,334UniSTS
TNG Radiation Hybrid Map1142107.0UniSTS
SHGC-111507  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371194,952,673 - 94,952,889UniSTSGRCh37
Build 361194,592,321 - 94,592,537RGDNCBI36
Celera1192,240,603 - 92,240,819RGD
Cytogenetic Map11q21UniSTS
HuRef1191,017,635 - 91,017,851UniSTS
TNG Radiation Hybrid Map1142107.0UniSTS
RH68616  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371194,929,706 - 94,929,879UniSTSGRCh37
Build 361194,569,354 - 94,569,527RGDNCBI36
Celera1192,217,636 - 92,217,809RGD
Cytogenetic Map11q21UniSTS
HuRef1190,994,683 - 90,994,856UniSTS
GeneMap99-GB4 RH Map11319.17UniSTS
NCBI RH Map11794.1UniSTS
D11S4631  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371194,921,944 - 94,922,137UniSTSGRCh37
Build 361194,561,592 - 94,561,785RGDNCBI36
Celera1192,209,874 - 92,210,067RGD
Cytogenetic Map11q21UniSTS
HuRef1190,986,922 - 90,987,115UniSTS
RH11849  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371194,898,799 - 94,898,971UniSTSGRCh37
Build 361194,538,447 - 94,538,619RGDNCBI36
Celera1192,186,729 - 92,186,901RGD
Cytogenetic Map11q21UniSTS
HuRef1190,963,765 - 90,963,937UniSTS
GeneMap99-GB4 RH Map11319.17UniSTS
NCBI RH Map11794.1UniSTS
SGC34501  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371194,902,368 - 94,902,481UniSTSGRCh37
Build 361194,542,016 - 94,542,129RGDNCBI36
Celera1192,190,298 - 92,190,411RGD
Cytogenetic Map11q21UniSTS
HuRef1190,967,333 - 90,967,446UniSTS
GeneMap99-GB4 RH Map11319.17UniSTS
Whitehead-RH Map11416.2UniSTS
NCBI RH Map11794.1UniSTS
RH18334  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371194,898,805 - 94,898,992UniSTSGRCh37
Build 361194,538,453 - 94,538,640RGDNCBI36
Celera1192,186,735 - 92,186,922RGD
Cytogenetic Map11q21UniSTS
HuRef1190,963,771 - 90,963,958UniSTS
GeneMap99-GB4 RH Map11319.17UniSTS
NCBI RH Map11794.1UniSTS
RH48984  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371194,906,271 - 94,906,411UniSTSGRCh37
Build 361194,545,919 - 94,546,059RGDNCBI36
Celera1192,194,201 - 92,194,341RGD
Cytogenetic Map11q21UniSTS
HuRef1190,971,236 - 90,971,376UniSTS
GeneMap99-GB4 RH Map11319.17UniSTS
NCBI RH Map11794.1UniSTS
RH47318  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371194,902,410 - 94,902,553UniSTSGRCh37
Build 361194,542,058 - 94,542,201RGDNCBI36
Celera1192,190,340 - 92,190,483RGD
Cytogenetic Map11q21UniSTS
HuRef1190,967,375 - 90,967,518UniSTS
GeneMap99-GB4 RH Map11319.17UniSTS
NCBI RH Map11794.1UniSTS
G33064  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371194,940,114 - 94,940,280UniSTSGRCh37
Celera1192,228,044 - 92,228,210UniSTS
Cytogenetic Map11q21UniSTS
HuRef1191,005,090 - 91,005,256UniSTS
A010B04  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371194,940,114 - 94,940,280UniSTSGRCh37
Celera1192,228,044 - 92,228,210UniSTS
Cytogenetic Map11q21UniSTS
HuRef1191,005,090 - 91,005,256UniSTS
GeneMap99-GB4 RH Map11319.17UniSTS
NCBI RH Map11794.1UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2430 2788 2246 4953 1724 2344 3 622 1937 464 2265 7279 6449 51 3719 850 1734 1611 174 1


1 to 22 of 22 rows
RefSeq Transcripts NM_001271594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_144665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011542614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024448355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047426416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054367754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054367755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054367756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB072894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF086251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF086504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK091132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK096300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK302366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL832673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AP000787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC013939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC017296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC045700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX649128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 22 of 22 rows

Ensembl Acc Id: ENST00000278499   ⟹   ENSP00000278499
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1195,173,148 - 95,232,541 (-)Ensembl
Ensembl Acc Id: ENST00000416495   ⟹   ENSP00000407008
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1195,184,135 - 95,231,046 (-)Ensembl
Ensembl Acc Id: ENST00000536441   ⟹   ENSP00000441927
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1195,165,513 - 95,231,202 (-)Ensembl
Ensembl Acc Id: ENST00000537480
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1195,191,565 - 95,232,475 (-)Ensembl
Ensembl Acc Id: ENST00000542176   ⟹   ENSP00000439580
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1195,191,465 - 95,232,527 (-)Ensembl
Ensembl Acc Id: ENST00000634898   ⟹   ENSP00000489281
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1195,189,819 - 95,232,518 (-)Ensembl
RefSeq Acc Id: NM_001271594   ⟹   NP_001258523
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381195,165,513 - 95,232,475 (-)NCBI
HuRef1190,963,643 - 91,030,664 (-)NCBI
CHM1_11194,781,781 - 94,848,813 (-)NCBI
T2T-CHM13v2.01195,172,632 - 95,239,586 (-)NCBI
Sequence:
RefSeq Acc Id: NM_144665   ⟹   NP_653266
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381195,165,513 - 95,231,202 (-)NCBI
GRCh371194,898,677 - 94,965,705 (-)NCBI
Build 361194,545,781 - 94,603,894 (-)NCBI Archive
Celera1192,194,063 - 92,252,174 (-)RGD
HuRef1190,963,643 - 91,030,664 (-)NCBI
CHM1_11194,781,781 - 94,847,354 (-)NCBI
T2T-CHM13v2.01195,172,632 - 95,238,313 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011542614   ⟹   XP_011540916
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381195,165,513 - 95,232,475 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024448355   ⟹   XP_024304123
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381195,165,513 - 95,232,337 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047426416   ⟹   XP_047282372
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381195,165,513 - 95,206,124 (-)NCBI
RefSeq Acc Id: XM_054367754   ⟹   XP_054223729
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01195,172,632 - 95,239,638 (-)NCBI
RefSeq Acc Id: XM_054367755   ⟹   XP_054223730
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01195,172,632 - 95,239,448 (-)NCBI
RefSeq Acc Id: XM_054367756   ⟹   XP_054223731
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01195,172,632 - 95,213,240 (-)NCBI
1 to 5 of 13 rows
1 to 5 of 13 rows
RefSeq Acc Id: NP_653266   ⟸   NM_144665
- Peptide Label: isoform 1
- UniProtKB: B7Z7P9 (UniProtKB/Swiss-Prot),   Q96AD1 (UniProtKB/Swiss-Prot),   P58005 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001258523   ⟸   NM_001271594
- Peptide Label: isoform 2
- UniProtKB: P58005 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011540916   ⟸   XM_011542614
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_024304123   ⟸   XM_024448355
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSP00000489281   ⟸   ENST00000634898

Name Modeler Protein Id AA Range Protein Structure
AF-P58005-F1-model_v2 AlphaFold P58005 1-492 view protein structure

RGD ID:6788782
Promoter ID:HG_KWN:13988
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000393234,   NM_144665,   UC001PFL.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361194,603,911 - 94,604,411 (-)MPROMDB


1 to 29 of 29 rows
Database
Acc Id
Source(s)
COSMIC SESN3 COSMIC
Ensembl Genes ENSG00000149212 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000278499 ENTREZGENE
  ENST00000278499.6 UniProtKB/Swiss-Prot
  ENST00000416495.6 UniProtKB/Swiss-Prot
  ENST00000536441 ENTREZGENE
  ENST00000536441.7 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.1290.10 UniProtKB/Swiss-Prot
GTEx ENSG00000149212 GTEx
HGNC ID HGNC:23060 ENTREZGENE
Human Proteome Map SESN3 Human Proteome Map
InterPro AhpD-like UniProtKB/Swiss-Prot
  Sestrin UniProtKB/Swiss-Prot
KEGG Report hsa:143686 UniProtKB/Swiss-Prot
NCBI Gene 143686 ENTREZGENE
OMIM 607768 OMIM
PANTHER PTHR12474 UniProtKB/Swiss-Prot
  SESTRIN-3 UniProtKB/Swiss-Prot
Pfam PA26 UniProtKB/Swiss-Prot
PharmGKB PA134914983 PharmGKB
Superfamily-SCOP SSF69118 UniProtKB/Swiss-Prot
UniProt A0A0U1RR17_HUMAN UniProtKB/TrEMBL
  B7Z7P9 ENTREZGENE
  F5H1K7_HUMAN UniProtKB/TrEMBL
  P58005 ENTREZGENE
  Q96AD1 ENTREZGENE
  SESN3_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary B7Z7P9 UniProtKB/Swiss-Prot
  Q96AD1 UniProtKB/Swiss-Prot
1 to 29 of 29 rows