Wdr33 (WD repeat domain 33) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Wdr33 (WD repeat domain 33) Mus musculus
Analyze
Symbol: Wdr33
Name: WD repeat domain 33
RGD ID: 1319456
MGI Page MGI
Description: Predicted to be involved in mRNA 3'-end processing. Located in nucleus. Orthologous to human WDR33 (WD repeat domain 33).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1110001N06Rik; 2310011G05Rik; 2810021O11Rik; 8430413N20Rik; pre-mRNA 3' end processing protein WDR33; WD repeat-containing protein 33; WD repeat-containing protein of 146 kDa; WD repeat-containing protein WDC146; WDC146
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391831,937,079 - 32,042,040 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1831,937,143 - 32,040,450 (+)EnsemblGRCm39 Ensembl
GRCm381831,804,057 - 31,908,987 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1831,804,090 - 31,907,397 (+)EnsemblGRCm38mm10GRCm38
MGSCv371831,963,711 - 32,068,641 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361831,970,295 - 32,050,005 (+)NCBIMGSCv36mm8
Celera1832,292,716 - 32,399,466 (+)NCBICelera
Cytogenetic Map18B1NCBI
cM Map1817.85NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Pre-mRNA 3'-end processing complex assembly and function. Chan S, etal., Wiley Interdiscip Rev RNA. 2011 May-Jun;2(3):321-35. doi: 10.1002/wrna.54. Epub 2010 Oct 18.
2. Means to an end: mechanisms of alternative polyadenylation of messenger RNA precursors. Gruber AR, etal., Wiley Interdiscip Rev RNA. 2014 Mar-Apr;5(2):183-96. doi: 10.1002/wrna.1206. Epub 2013 Nov 14.
3. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11162572   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:17967808   PMID:18799693   PMID:21677750   PMID:21873635   PMID:22083510   PMID:22922362   PMID:23892456   PMID:30196744   PMID:36293380   PMID:38355793  


Genomics

Comparative Map Data
Wdr33
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391831,937,079 - 32,042,040 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1831,937,143 - 32,040,450 (+)EnsemblGRCm39 Ensembl
GRCm381831,804,057 - 31,908,987 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1831,804,090 - 31,907,397 (+)EnsemblGRCm38mm10GRCm38
MGSCv371831,963,711 - 32,068,641 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361831,970,295 - 32,050,005 (+)NCBIMGSCv36mm8
Celera1832,292,716 - 32,399,466 (+)NCBICelera
Cytogenetic Map18B1NCBI
cM Map1817.85NCBI
WDR33
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382127,701,027 - 127,811,171 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2127,701,027 - 127,811,187 (-)EnsemblGRCh38hg38GRCh38
GRCh372128,458,601 - 128,568,745 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362128,178,278 - 128,285,215 (-)NCBINCBI36Build 36hg18NCBI36
Build 342128,178,037 - 128,284,975NCBI
Celera2121,772,751 - 121,879,694 (-)NCBICelera
Cytogenetic Map2q14.3NCBI
HuRef2120,768,042 - 120,874,721 (-)NCBIHuRef
CHM1_12128,466,415 - 128,573,757 (-)NCBICHM1_1
T2T-CHM13v2.02128,136,260 - 128,246,425 (-)NCBIT2T-CHM13v2.0
Wdr33
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81823,706,708 - 23,812,985 (+)NCBIGRCr8
mRatBN7.21823,432,233 - 23,535,460 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1823,432,191 - 23,468,597 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1823,560,579 - 23,663,560 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01824,309,591 - 24,412,620 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01823,655,547 - 23,758,526 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01824,584,832 - 24,689,681 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1824,584,900 - 24,689,636 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01824,302,033 - 24,403,950 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41824,219,464 - 24,328,893 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11824,246,048 - 24,356,083 (+)NCBI
Celera1823,184,843 - 23,287,871 (+)NCBICelera
Cytogenetic Map18p12NCBI
Wdr33
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554592,740,466 - 2,841,376 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554592,740,465 - 2,841,376 (+)NCBIChiLan1.0ChiLan1.0
WDR33
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21347,832,747 - 47,938,394 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B47,848,994 - 47,953,992 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B32,465,959 - 32,571,024 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B128,371,250 - 128,476,083 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B128,371,250 - 128,476,083 (-)Ensemblpanpan1.1panPan2
WDR33
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11922,788,462 - 22,904,610 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1922,788,508 - 23,024,378 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1923,034,606 - 23,152,142 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01924,114,118 - 24,230,735 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1924,115,180 - 24,230,721 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11922,893,968 - 22,934,632 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01923,012,800 - 23,129,479 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01924,144,095 - 24,260,757 (+)NCBIUU_Cfam_GSD_1.0
Wdr33
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530398,006,836 - 98,112,211 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646943,505,476 - 43,610,851 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646943,505,507 - 43,610,851 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WDR33
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1559,520,065 - 59,638,879 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11559,519,832 - 59,639,050 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21566,271,930 - 66,371,372 (+)NCBISscrofa10.2Sscrofa10.2susScr3
WDR33
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1102,406,083 - 2,511,966 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl102,406,100 - 2,515,016 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606120,243,667 - 20,356,103 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wdr33
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473214,183,132 - 14,280,795 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473214,183,734 - 14,280,825 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Wdr33
3652 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:639
Count of miRNA genes:442
Interacting mature miRNAs:506
Transcripts:ENSMUST00000025264, ENSMUST00000082319
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558743Kcal1_mkilocalorie 1 (mouse)Not determined181901887453018992Mouse
1302163Bmd16_mbone mineral density 16 (mouse)Not determined182966791463668060Mouse
11532716Sluc41c_msusceptibility to lung cancer 41c (mouse)182261991456620127Mouse
11532715Sluc41b_msusceptibility to lung cancer 41b (mouse)182261991456620127Mouse
11532710Sluc41a_msusceptibility to lung cancer 41a (mouse)182261991456620127Mouse
25823171Hrsq10_mhost response to SARS QTL 10, D4% weight (mouse)182724111558827077Mouse
11532709Sluc41_msusceptibility to lung cancer 41 (mouse)182095369457590708Mouse
1301400Lmr13_mleishmaniasis resistance 13 (mouse)Not determined182810938062109518Mouse
25823174Hrsq11_mhost response to SARS QTL 11, log titer (mouse)182724111558827077Mouse
1300638Im7_mimmunoregulatory 7 (mouse)Not determined181901887453018992Mouse
1558873Hrtfm7_mheart failure modifier 7 (mouse)Not determined18808696442087106Mouse
25823173Hrsq12_mhost response to SARS QTL 12, hemorrhage (mouse)182489588178339555Mouse
1300994Pvcan3_mprotection against vaginal candidiasis 3 (mouse)Not determined181619964050199776Mouse
1301570Sluc14_msusceptibility to lung cancer 14 (mouse)Not determined182261991456620127Mouse
13504732Cath6_mcarotid atherosclerosis 6 (mouse)181363712647637126Mouse
1558849W3q15_mweight 3 weeks QTL 15 (mouse)Not determined18504111961272643Mouse
12880412V125Dq12_mvitamin D active form serum level QTL 12 (mouse)183023306764233067Mouse
1300877Adip8_madiposity 8 (mouse)Not determined182261991456620127Mouse
4141857Mhysq5_mmale hybrid sterility QTL 5 (mouse)Not determined2813060462130739Mouse
1300685Scc5_mcolon tumor susceptibility 5 (mouse)Not determined183198848065988629Mouse
13207585Mwmlpt3_mMorris water maze latency to platform, training, 3 (mouse)18133547739Mouse
1301307Phospq1_mphospholipid QTL 1 (mouse)Not determined181813970452139859Mouse
13207589Mwmlpa3_mMorris water maze latency to platform, all, 3 (mouse)18133547739Mouse
1301950Otx2m1_morthodenticle homolog 2 (Drosophila) modifier 1 (mouse)Not determined182156868236187740Mouse
4142031Moen1_mmodifier of engrailed QTL 1 (mouse)Not determined182411556058115730Mouse
12904950Smmq3_msoleus muscle mass QTL 3 (mouse)182605687560056875Mouse
25823167Hrsq5_mhost response to SARS QTL 5, D3% weight (mouse)182724111558827077Mouse
1357603Mom3_mmodifier of Min 3 (mouse)Not determined181403002367098962Mouse
13463476Hctq8_mhematocrit QTL 8 (mouse)182121758055217727Mouse
27226723Tibw9_mtibia width 9, proximal, 16 week (mouse)18320000060933072Mouse

Markers in Region
PMC150726P5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381831,819,890 - 31,820,190UniSTSGRCm38
MGSCv371831,979,544 - 31,979,844UniSTSGRCm37
Celera1832,308,986 - 32,309,286UniSTS
Cytogenetic Map3F2.3UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map18B3UniSTS
D11Bhm20  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map19D1UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map12D1UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map4E1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map16C1.1UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map1C1.3UniSTS
Cytogenetic Map13D2UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A2UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map16C4UniSTS
Cytogenetic Map3G1UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map7B1-B2UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic Map11B1.1UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic Map10D2UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXC-DUniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map11A3.2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map19BUniSTS
cM Map1144.15UniSTS
Gstm2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381831,820,109 - 31,820,190UniSTSGRCm38
GRCm383107,984,175 - 107,985,080UniSTSGRCm38
MGSCv371831,979,763 - 31,979,844UniSTSGRCm37
MGSCv373107,787,093 - 107,787,998UniSTSGRCm37
Celera3110,317,251 - 110,318,156UniSTS
Celera1832,309,205 - 32,309,286UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map3F2.3UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001170966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001170967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001170970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_028866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006526298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006526300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006526301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017317996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB086191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC124393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC131761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC161511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK003256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK009297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK012788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK018408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK050653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK078286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK084906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC011156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC019463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC019526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC030076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC064745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000025264   ⟹   ENSMUSP00000025264
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1831,937,151 - 32,040,450 (+)Ensembl
GRCm38.p6 Ensembl1831,804,098 - 31,907,397 (+)Ensembl
Ensembl Acc Id: ENSMUST00000082319   ⟹   ENSMUSP00000080936
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1831,937,143 - 31,974,695 (+)Ensembl
GRCm38.p6 Ensembl1831,804,090 - 31,841,642 (+)Ensembl
Ensembl Acc Id: ENSMUST00000234137
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1832,015,195 - 32,019,423 (+)Ensembl
GRCm38.p6 Ensembl1831,882,142 - 31,886,370 (+)Ensembl
Ensembl Acc Id: ENSMUST00000234302
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1831,937,143 - 31,961,905 (+)Ensembl
GRCm38.p6 Ensembl1831,804,090 - 31,828,852 (+)Ensembl
Ensembl Acc Id: ENSMUST00000234344   ⟹   ENSMUSP00000157238
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1831,937,229 - 31,968,475 (+)Ensembl
GRCm38.p6 Ensembl1831,804,176 - 31,835,422 (+)Ensembl
Ensembl Acc Id: ENSMUST00000234937
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1832,036,970 - 32,039,891 (+)Ensembl
GRCm38.p6 Ensembl1831,903,917 - 31,906,838 (+)Ensembl
Ensembl Acc Id: ENSMUST00000234957   ⟹   ENSMUSP00000157157
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1831,937,146 - 31,974,994 (+)Ensembl
GRCm38.p6 Ensembl1831,804,093 - 31,841,941 (+)Ensembl
RefSeq Acc Id: NM_001170966   ⟹   NP_001164437
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391831,937,110 - 31,968,488 (+)NCBI
GRCm381831,804,057 - 31,835,435 (+)NCBI
MGSCv371831,963,711 - 32,068,641 (+)RGD
Celera1832,292,716 - 32,399,466 (+)RGD
cM Map18 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001170967   ⟹   NP_001164438
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391831,937,110 - 31,974,695 (+)NCBI
GRCm381831,804,057 - 31,841,642 (+)NCBI
MGSCv371831,963,711 - 32,068,641 (+)RGD
Celera1832,292,716 - 32,399,466 (+)RGD
cM Map18 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001170970   ⟹   NP_001164441
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391831,937,110 - 31,974,695 (+)NCBI
GRCm381831,804,057 - 31,841,642 (+)NCBI
MGSCv371831,963,711 - 32,068,641 (+)RGD
Celera1832,292,716 - 32,399,466 (+)RGD
cM Map18 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_028866   ⟹   NP_083142
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391831,937,110 - 32,042,040 (+)NCBI
GRCm381831,804,057 - 31,908,987 (+)ENTREZGENE
MGSCv371831,963,711 - 32,068,641 (+)RGD
Celera1832,292,716 - 32,399,466 (+)RGD
cM Map18 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006526298   ⟹   XP_006526361
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391831,937,084 - 32,040,740 (+)NCBI
GRCm381831,804,062 - 31,907,845 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006526300   ⟹   XP_006526363
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391831,937,079 - 32,040,898 (+)NCBI
GRCm381831,804,062 - 31,907,845 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006526301   ⟹   XP_006526364
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391831,937,079 - 32,040,898 (+)NCBI
GRCm381831,804,062 - 31,907,845 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017317996   ⟹   XP_017173485
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391831,937,315 - 32,040,740 (+)NCBI
GRCm381831,804,300 - 31,907,845 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036161296   ⟹   XP_036017189
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391831,937,367 - 31,986,036 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036161297   ⟹   XP_036017190
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391831,937,115 - 32,002,644 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001164437 (Get FASTA)   NCBI Sequence Viewer  
  NP_001164438 (Get FASTA)   NCBI Sequence Viewer  
  NP_001164441 (Get FASTA)   NCBI Sequence Viewer  
  NP_083142 (Get FASTA)   NCBI Sequence Viewer  
  XP_006526361 (Get FASTA)   NCBI Sequence Viewer  
  XP_006526363 (Get FASTA)   NCBI Sequence Viewer  
  XP_006526364 (Get FASTA)   NCBI Sequence Viewer  
  XP_017173485 (Get FASTA)   NCBI Sequence Viewer  
  XP_036017189 (Get FASTA)   NCBI Sequence Viewer  
  XP_036017190 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH03939 (Get FASTA)   NCBI Sequence Viewer  
  AAH11156 (Get FASTA)   NCBI Sequence Viewer  
  AAH19463 (Get FASTA)   NCBI Sequence Viewer  
  AAH19526 (Get FASTA)   NCBI Sequence Viewer  
  AAH30076 (Get FASTA)   NCBI Sequence Viewer  
  AAH64745 (Get FASTA)   NCBI Sequence Viewer  
  BAB22672 (Get FASTA)   NCBI Sequence Viewer  
  BAC00776 (Get FASTA)   NCBI Sequence Viewer  
  BAC27549 (Get FASTA)   NCBI Sequence Viewer  
  BAC32233 (Get FASTA)   NCBI Sequence Viewer  
  BAC32534 (Get FASTA)   NCBI Sequence Viewer  
  BAC34364 (Get FASTA)   NCBI Sequence Viewer  
  BAC37204 (Get FASTA)   NCBI Sequence Viewer  
  BAC37884 (Get FASTA)   NCBI Sequence Viewer  
  BAE36665 (Get FASTA)   NCBI Sequence Viewer  
  EDK97042 (Get FASTA)   NCBI Sequence Viewer  
  EDK97043 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000025264
  ENSMUSP00000025264.7
  ENSMUSP00000080936
  ENSMUSP00000080936.9
  ENSMUSP00000157157
  ENSMUSP00000157157.2
  ENSMUSP00000157238
  ENSMUSP00000157238.2
GenBank Protein Q8K4P0 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_083142   ⟸   NM_028866
- Peptide Label: isoform 1
- UniProtKB: Q8C7C6 (UniProtKB/Swiss-Prot),   Q8CD02 (UniProtKB/Swiss-Prot),   Q8K4P0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001164438   ⟸   NM_001170967
- Peptide Label: isoform 3
- UniProtKB: Q8K1G7 (UniProtKB/TrEMBL),   D3YX80 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001164441   ⟸   NM_001170970
- Peptide Label: isoform 2
- UniProtKB: A0A3Q4EGD8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001164437   ⟸   NM_001170966
- Peptide Label: isoform 4
- UniProtKB: Q9D1P6 (UniProtKB/TrEMBL),   Q8BRC5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006526361   ⟸   XM_006526298
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006526363   ⟸   XM_006526300
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006526364   ⟸   XM_006526301
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017173485   ⟸   XM_017317996
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSMUSP00000025264   ⟸   ENSMUST00000025264
Ensembl Acc Id: ENSMUSP00000157157   ⟸   ENSMUST00000234957
Ensembl Acc Id: ENSMUSP00000157238   ⟸   ENSMUST00000234344
Ensembl Acc Id: ENSMUSP00000080936   ⟸   ENSMUST00000082319
RefSeq Acc Id: XP_036017190   ⟸   XM_036161297
- Peptide Label: isoform X5
RefSeq Acc Id: XP_036017189   ⟸   XM_036161296
- Peptide Label: isoform X4
- UniProtKB: A0A3Q4EGD8 (UniProtKB/TrEMBL)
Protein Domains
Collagen-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8K4P0-F1-model_v2 AlphaFold Q8K4P0 1-1330 view protein structure

Promoters
RGD ID:13677302
Promoter ID:EPDNEW_M22800
Type:initiation region
Name:Wdr33_1
Description:Mus musculus WD repeat domain 33 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M22801  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381831,804,098 - 31,804,158EPDNEW
RGD ID:13677306
Promoter ID:EPDNEW_M22801
Type:multiple initiation site
Name:Wdr33_2
Description:Mus musculus WD repeat domain 33 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M22800  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381831,809,235 - 31,809,295EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1921570 AgrOrtholog
Ensembl Genes ENSMUSG00000024400 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000025264 ENTREZGENE
  ENSMUST00000025264.8 UniProtKB/Swiss-Prot
  ENSMUST00000082319 ENTREZGENE
  ENSMUST00000082319.15 UniProtKB/TrEMBL
  ENSMUST00000234344 ENTREZGENE
  ENSMUST00000234344.2 UniProtKB/TrEMBL
  ENSMUST00000234957 ENTREZGENE
  ENSMUST00000234957.2 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Collagen UniProtKB/TrEMBL
  Pfs2-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:74320 UniProtKB/Swiss-Prot
MGD MGI:1921570 ENTREZGENE
NCBI Gene 74320 ENTREZGENE
PANTHER PRE-MRNA 3' END PROCESSING PROTEIN WDR33 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR22836 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Collagen UniProtKB/TrEMBL
  WD40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Wdr33 PhenoGen
PROSITE WD_REPEATS_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART WD40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A3Q4EGD8 ENTREZGENE, UniProtKB/TrEMBL
  D3YX80 ENTREZGENE
  Q3TSL0_MOUSE UniProtKB/TrEMBL
  Q6P236_MOUSE UniProtKB/TrEMBL
  Q8BRC5 ENTREZGENE, UniProtKB/TrEMBL
  Q8C4Z4_MOUSE UniProtKB/TrEMBL
  Q8C7C6 ENTREZGENE
  Q8CD02 ENTREZGENE
  Q8K1G7 ENTREZGENE, UniProtKB/TrEMBL
  Q8K4P0 ENTREZGENE
  Q8VE87_MOUSE UniProtKB/TrEMBL
  Q99KZ7_MOUSE UniProtKB/TrEMBL
  Q9D1P6 ENTREZGENE, UniProtKB/TrEMBL
  WDR33_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary D3YX80 UniProtKB/TrEMBL
  Q8C7C6 UniProtKB/Swiss-Prot
  Q8CD02 UniProtKB/Swiss-Prot