Ap5m1 (adaptor-related protein complex 5, mu 1 subunit) - Rat Genome Database

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Gene: Ap5m1 (adaptor-related protein complex 5, mu 1 subunit) Mus musculus
Analyze
Symbol: Ap5m1
Name: adaptor-related protein complex 5, mu 1 subunit
RGD ID: 1317657
MGI Page MGI
Description: Predicted to be involved in endosomal transport. Predicted to be located in membrane. Predicted to be part of AP-type membrane coat adaptor complex. Predicted to be active in cytosol; late endosome; and lysosome. Orthologous to human AP5M1 (adaptor related protein complex 5 subunit mu 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4932432K03Rik; adapter-related protein complex 5 mu subunit; adapter-related protein complex 5 subunit mu-1; adaptor-related protein complex 5 subunit mu-1; AP-5 complex subunit mu-1; MHD domain-containing death-inducing protein; mu-2-related death-inducing protein; MU-2/AP1M2 domain containing, death-inducing; Mu5; muD; Muden; Mudeng
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391449,303,869 - 49,331,681 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1449,303,554 - 49,331,691 (+)EnsemblGRCm39 Ensembl
GRCm381449,066,408 - 49,094,114 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1449,066,097 - 49,094,234 (+)EnsemblGRCm38mm10GRCm38
MGSCv371449,686,170 - 49,707,398 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361447,988,500 - 48,009,674 (+)NCBIMGSCv36mm8
Celera1445,267,199 - 45,288,655 (+)NCBICelera
Cytogenetic Map14C1NCBI
cM Map1425.36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
AP-5 adaptor complex  (NAS)
AP-type membrane coat adaptor complex  (IBA,ISO,ISS)
cytosol  (IBA,ISO,ISS)
late endosome  (IBA,ISO,ISS,NAS)
late endosome membrane  (IEA)
lysosomal membrane  (IEA)
lysosome  (IBA,ISO,ISS)
membrane  (ISO,ISS)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18395520   PMID:18799693  
PMID:21267068   PMID:21873635   PMID:22022230   PMID:32325033   PMID:38355793  


Genomics

Comparative Map Data
Ap5m1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391449,303,869 - 49,331,681 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1449,303,554 - 49,331,691 (+)EnsemblGRCm39 Ensembl
GRCm381449,066,408 - 49,094,114 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1449,066,097 - 49,094,234 (+)EnsemblGRCm38mm10GRCm38
MGSCv371449,686,170 - 49,707,398 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361447,988,500 - 48,009,674 (+)NCBIMGSCv36mm8
Celera1445,267,199 - 45,288,655 (+)NCBICelera
Cytogenetic Map14C1NCBI
cM Map1425.36NCBI
AP5M1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381457,268,971 - 57,298,742 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1457,268,924 - 57,298,742 (+)EnsemblGRCh38hg38GRCh38
GRCh371457,735,689 - 57,765,460 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361456,805,380 - 56,826,545 (+)NCBINCBI36Build 36hg18NCBI36
Build 341456,805,379 - 56,826,544NCBI
Celera1437,785,692 - 37,806,883 (+)NCBICelera
Cytogenetic Map14q22.3NCBI
HuRef1437,900,404 - 37,921,545 (+)NCBIHuRef
CHM1_11457,674,243 - 57,695,425 (+)NCBICHM1_1
T2T-CHM13v2.01451,475,418 - 51,505,190 (+)NCBIT2T-CHM13v2.0
Ap5m1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81524,835,122 - 24,864,854 (+)NCBIGRCr8
mRatBN7.21522,355,478 - 22,385,222 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1522,355,500 - 22,377,750 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1525,130,663 - 25,152,869 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01526,094,128 - 26,116,390 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01524,339,159 - 24,361,378 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01525,933,483 - 25,955,745 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1525,933,483 - 25,955,745 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01529,856,055 - 29,883,540 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41525,053,279 - 25,075,541 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11525,069,198 - 25,089,945 (+)NCBI
Celera1522,732,365 - 22,754,616 (+)NCBICelera
Cytogenetic Map15p14NCBI
Ap5m1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546611,191,511 - 11,209,388 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546611,191,511 - 11,216,274 (+)NCBIChiLan1.0ChiLan1.0
AP5M1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21558,375,435 - 58,396,912 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11457,592,297 - 57,622,094 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01437,839,766 - 37,869,926 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11456,110,452 - 56,131,921 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1456,110,452 - 56,131,921 (+)Ensemblpanpan1.1panPan2
LOC100685159
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1479,914,436 - 79,982,053 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl832,848,205 - 32,902,815 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha479,620,787 - 79,622,854 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0480,582,419 - 80,584,487 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1480,256,587 - 80,258,655 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0480,376,999 - 80,379,067 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0480,940,052 - 80,942,120 (+)NCBIUU_Cfam_GSD_1.0
Ap5m1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864072,274,015 - 72,329,014 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364951,862,790 - 1,900,955 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AP5M1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1186,430,227 - 186,461,319 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11186,430,154 - 186,464,347 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21207,004,493 - 207,027,562 (+)NCBISscrofa10.2Sscrofa10.2susScr3
AP5M1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12434,449,826 - 34,472,141 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2434,450,227 - 34,473,732 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605322,672,737 - 22,694,997 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ap5m1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248842,311,873 - 2,332,170 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248842,311,570 - 2,333,436 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ap5m1
930 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:331
Count of miRNA genes:261
Interacting mature miRNAs:283
Transcripts:ENSMUST00000037473
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
27226744Metcl6_mmetatarsal-calcaneal length 6, 5 week (mouse)143032195752937457Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse
27226737Metcl12_mmetatarsal-calcaneal length 12, 10 week (mouse)143322195759437449Mouse
1301372Sluc13_msusceptibility to lung cancer 13 (mouse)Not determined141882760452827726Mouse
1301091Bbaa21_mB.burgdorferi-associated arthritis 21 (mouse)Not determined144306584777066045Mouse
4141484Hcbip1_mhexachlorobenzene induced porphyria 1 (mouse)Not determined4733525059962593Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143033525064335381Mouse
10043887Cia50_mcollagen induced arthritis QTL 50 (mouse)Not determined143743018571430320Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse
10043886Cia49_mcollagen induced arthritis QTL 49 (mouse)Not determined142999699463997133Mouse
27226727Tibl21_mtibia length 21, 16 week (mouse)143412195752937457Mouse
14746973Manh76_mmandible shape 76 (mouse)142228721756287217Mouse
1300909Ath13_matherosclerosis 13 (mouse)Not determined143033525064335381Mouse
13506929Recrq10_mrecombination rate in male meiosis QTL 10 (mouse)142792195761137449Mouse

Markers in Region
UniSTS:237175  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381449,087,348 - 49,087,556UniSTSGRCm38
MGSCv371449,707,023 - 49,707,231UniSTSGRCm37
Celera1445,288,279 - 45,288,487UniSTS
Cytogenetic Map14C1UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001360070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_144535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006519623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006519624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006519626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011245212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036158881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036158882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003950905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC118539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK016540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK041400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK042544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT025618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000037473   ⟹   ENSMUSP00000046536
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1449,303,952 - 49,328,336 (+)Ensembl
GRCm38.p6 Ensembl1449,066,495 - 49,090,879 (+)Ensembl
Ensembl Acc Id: ENSMUST00000226695   ⟹   ENSMUSP00000154575
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1449,321,314 - 49,331,691 (+)Ensembl
GRCm38.p6 Ensembl1449,083,857 - 49,094,234 (+)Ensembl
Ensembl Acc Id: ENSMUST00000227066   ⟹   ENSMUSP00000153926
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1449,318,462 - 49,328,255 (+)Ensembl
GRCm38.p6 Ensembl1449,081,005 - 49,090,798 (+)Ensembl
Ensembl Acc Id: ENSMUST00000227410   ⟹   ENSMUSP00000154044
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1449,303,988 - 49,324,822 (+)Ensembl
GRCm38.p6 Ensembl1449,066,531 - 49,087,365 (+)Ensembl
Ensembl Acc Id: ENSMUST00000227431   ⟹   ENSMUSP00000153761
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1449,303,554 - 49,320,267 (+)Ensembl
GRCm38.p6 Ensembl1449,066,097 - 49,082,810 (+)Ensembl
Ensembl Acc Id: ENSMUST00000227608   ⟹   ENSMUSP00000154035
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1449,303,999 - 49,324,876 (+)Ensembl
GRCm38.p6 Ensembl1449,066,542 - 49,087,419 (+)Ensembl
Ensembl Acc Id: ENSMUST00000227991   ⟹   ENSMUSP00000154211
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1449,311,450 - 49,318,516 (+)Ensembl
GRCm38.p6 Ensembl1449,073,993 - 49,081,059 (+)Ensembl
Ensembl Acc Id: ENSMUST00000228238   ⟹   ENSMUSP00000154186
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1449,303,953 - 49,314,150 (+)Ensembl
GRCm38.p6 Ensembl1449,066,496 - 49,076,693 (+)Ensembl
RefSeq Acc Id: NM_001360070   ⟹   NP_001346999
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391449,304,006 - 49,328,197 (+)NCBI
GRCm381449,066,549 - 49,090,740 (+)NCBI
Sequence:
RefSeq Acc Id: NM_144535   ⟹   NP_653118
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391449,304,006 - 49,325,180 (+)NCBI
GRCm381449,066,549 - 49,087,723 (+)NCBI
MGSCv371449,686,170 - 49,707,398 (+)RGD
Celera1445,267,199 - 45,288,655 (+)RGD
cM Map14 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006519623   ⟹   XP_006519686
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391449,303,869 - 49,328,336 (+)NCBI
GRCm381449,066,408 - 49,090,879 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006519624   ⟹   XP_006519687
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391449,304,012 - 49,328,264 (+)NCBI
GRCm381449,066,609 - 49,090,807 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006519626   ⟹   XP_006519689
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391449,303,889 - 49,328,264 (+)NCBI
GRCm381449,066,662 - 49,090,807 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011245212   ⟹   XP_011243514
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391449,303,869 - 49,331,681 (+)NCBI
GRCm381449,066,408 - 49,094,114 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036158881   ⟹   XP_036014774
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391449,303,955 - 49,328,336 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036158882   ⟹   XP_036014775
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391449,304,021 - 49,328,336 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003950905
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391449,303,869 - 49,328,264 (+)NCBI
GRCm381449,066,408 - 49,086,466 (+)NCBI
Sequence:
RefSeq Acc Id: NP_653118   ⟸   NM_144535
- UniProtKB: Q8R5B1 (UniProtKB/Swiss-Prot),   Q8BY11 (UniProtKB/Swiss-Prot),   Q8BJ58 (UniProtKB/Swiss-Prot),   Q8BJ31 (UniProtKB/Swiss-Prot),   Q8BII2 (UniProtKB/Swiss-Prot),   Q3TPT5 (UniProtKB/Swiss-Prot),   Q3TDF2 (UniProtKB/Swiss-Prot),   Q8BJ63 (UniProtKB/Swiss-Prot),   A0A0R4J0K9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006519686   ⟸   XM_006519623
- Peptide Label: isoform X1
- UniProtKB: Q8R5B1 (UniProtKB/Swiss-Prot),   Q8BY11 (UniProtKB/Swiss-Prot),   Q8BJ58 (UniProtKB/Swiss-Prot),   Q8BJ31 (UniProtKB/Swiss-Prot),   Q8BII2 (UniProtKB/Swiss-Prot),   Q3TPT5 (UniProtKB/Swiss-Prot),   Q3TDF2 (UniProtKB/Swiss-Prot),   Q8BJ63 (UniProtKB/Swiss-Prot),   A0A0R4J0K9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006519687   ⟸   XM_006519624
- Peptide Label: isoform X2
- UniProtKB: Q8R5B1 (UniProtKB/Swiss-Prot),   Q8BY11 (UniProtKB/Swiss-Prot),   Q8BJ63 (UniProtKB/Swiss-Prot),   Q8BJ58 (UniProtKB/Swiss-Prot),   Q8BJ31 (UniProtKB/Swiss-Prot),   Q8BII2 (UniProtKB/Swiss-Prot),   Q3TPT5 (UniProtKB/Swiss-Prot),   Q3TDF2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006519689   ⟸   XM_006519626
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_011243514   ⟸   XM_011245212
- Peptide Label: isoform X1
- UniProtKB: Q8R5B1 (UniProtKB/Swiss-Prot),   Q8BY11 (UniProtKB/Swiss-Prot),   Q8BJ58 (UniProtKB/Swiss-Prot),   Q8BJ31 (UniProtKB/Swiss-Prot),   Q8BII2 (UniProtKB/Swiss-Prot),   Q3TPT5 (UniProtKB/Swiss-Prot),   Q3TDF2 (UniProtKB/Swiss-Prot),   Q8BJ63 (UniProtKB/Swiss-Prot),   A0A0R4J0K9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001346999   ⟸   NM_001360070
- UniProtKB: Q8R5B1 (UniProtKB/Swiss-Prot),   Q8BY11 (UniProtKB/Swiss-Prot),   Q8BJ63 (UniProtKB/Swiss-Prot),   Q8BJ58 (UniProtKB/Swiss-Prot),   Q8BJ31 (UniProtKB/Swiss-Prot),   Q8BII2 (UniProtKB/Swiss-Prot),   Q3TPT5 (UniProtKB/Swiss-Prot),   Q3TDF2 (UniProtKB/Swiss-Prot),   A0A0R4J0K9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000046536   ⟸   ENSMUST00000037473
Ensembl Acc Id: ENSMUSP00000154186   ⟸   ENSMUST00000228238
Ensembl Acc Id: ENSMUSP00000154035   ⟸   ENSMUST00000227608
Ensembl Acc Id: ENSMUSP00000153761   ⟸   ENSMUST00000227431
Ensembl Acc Id: ENSMUSP00000154044   ⟸   ENSMUST00000227410
Ensembl Acc Id: ENSMUSP00000154211   ⟸   ENSMUST00000227991
Ensembl Acc Id: ENSMUSP00000153926   ⟸   ENSMUST00000227066
Ensembl Acc Id: ENSMUSP00000154575   ⟸   ENSMUST00000226695
RefSeq Acc Id: XP_036014774   ⟸   XM_036158881
- Peptide Label: isoform X2
- UniProtKB: Q8R5B1 (UniProtKB/Swiss-Prot),   Q8BY11 (UniProtKB/Swiss-Prot),   Q8BJ63 (UniProtKB/Swiss-Prot),   Q8BJ58 (UniProtKB/Swiss-Prot),   Q8BJ31 (UniProtKB/Swiss-Prot),   Q8BII2 (UniProtKB/Swiss-Prot),   Q3TPT5 (UniProtKB/Swiss-Prot),   Q3TDF2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_036014775   ⟸   XM_036158882
- Peptide Label: isoform X3
Protein Domains
MHD

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BJ63-F1-model_v2 AlphaFold Q8BJ63 1-490 view protein structure

Promoters
RGD ID:8682098
Promoter ID:EPDNEW_M19080
Type:initiation region
Name:Ap5m1_1
Description:Mus musculus adaptor-related protein complex 5, mu 1 subunit, transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381449,066,549 - 49,066,609EPDNEW
RGD ID:6825208
Promoter ID:MM_KWN:16513
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day3,   3T3L1_Day4,   Brain,   MEF_B6
Transcripts:NM_144535,   UC007TJX.1,   UC007TJY.1,   UC007TKA.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361449,686,116 - 49,686,616 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1921635 AgrOrtholog
Ensembl Genes ENSMUSG00000036291 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000037473 ENTREZGENE
  ENSMUST00000037473.6 UniProtKB/TrEMBL
  ENSMUST00000226695.2 UniProtKB/TrEMBL
  ENSMUST00000227066.2 UniProtKB/TrEMBL
  ENSMUST00000227410.2 UniProtKB/TrEMBL
  ENSMUST00000227431.2 UniProtKB/TrEMBL
  ENSMUST00000227608.2 UniProtKB/TrEMBL
  ENSMUST00000227991.2 UniProtKB/TrEMBL
  ENSMUST00000228238.2 UniProtKB/Swiss-Prot
Gene3D-CATH Mu homology domain, subdomain B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro AP2_Mu_C_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AP5M1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:74385 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1921635 ENTREZGENE
NCBI Gene 74385 ENTREZGENE
PANTHER AP-5 COMPLEX SUBUNIT MU-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR16082 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Adap_comp_sub UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ap5m1 PhenoGen
PROSITE MHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49447 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0R4J0K9 ENTREZGENE, UniProtKB/TrEMBL
  A0A2I3BPF2_MOUSE UniProtKB/TrEMBL
  A0A2I3BPU8_MOUSE UniProtKB/TrEMBL
  A0A2I3BQ42_MOUSE UniProtKB/TrEMBL
  A0A2I3BQF1_MOUSE UniProtKB/TrEMBL
  A0A2I3BQK6_MOUSE UniProtKB/TrEMBL
  A0A2I3BRQ4_MOUSE UniProtKB/TrEMBL
  AP5M1_MOUSE UniProtKB/Swiss-Prot
  Q3TDF2 ENTREZGENE
  Q3TPT5 ENTREZGENE
  Q8BII2 ENTREZGENE
  Q8BJ31 ENTREZGENE
  Q8BJ58 ENTREZGENE
  Q8BJ63 ENTREZGENE
  Q8BY11 ENTREZGENE
  Q8R5B1 ENTREZGENE
UniProt Secondary Q3TDF2 UniProtKB/Swiss-Prot
  Q3TPT5 UniProtKB/Swiss-Prot
  Q8BII2 UniProtKB/Swiss-Prot
  Q8BJ31 UniProtKB/Swiss-Prot
  Q8BJ58 UniProtKB/Swiss-Prot
  Q8BY11 UniProtKB/Swiss-Prot
  Q8R5B1 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-11-27 Ap5m1  adaptor-related protein complex 5, mu 1 subunit  Mudeng  MU-2/AP1M2 domain containing, death-inducing  Symbol and/or name change 5135510 APPROVED