Rbm7 (RNA binding motif protein 7) - Rat Genome Database

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Gene: Rbm7 (RNA binding motif protein 7) Mus musculus
Analyze
Symbol: Rbm7
Name: RNA binding motif protein 7
RGD ID: 1317543
MGI Page MGI
Description: Predicted to enable 14-3-3 protein binding activity and RNA binding activity. Predicted to be involved in regulation of alternative mRNA splicing, via spliceosome and snRNA catabolic process. Located in nucleus. Orthologous to human RBM7 (RNA binding motif protein 7).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1200007M24Rik; 1500011D06Rik; AU041934; AW554393; RNA-binding motif protein 7; RNA-binding protein 7
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm12321   LOC665443  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39948,399,997 - 48,406,630 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl948,400,001 - 48,406,599 (-)EnsemblGRCm39 Ensembl
GRCm38948,488,697 - 48,495,330 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl948,488,701 - 48,495,299 (-)EnsemblGRCm38mm10GRCm38
MGSCv37948,296,814 - 48,303,410 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36948,240,676 - 48,247,272 (-)NCBIMGSCv36mm8
Celera945,785,707 - 45,792,303 (-)NCBICelera
Cytogenetic Map9A5.3NCBI
cM Map926.43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleolus  (ISO)
nucleoplasm  (ISO,ISS,TAS)
nucleus  (IBA,IDA,ISO)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12456657   PMID:12477932   PMID:14610273   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073  
PMID:18799693   PMID:21873635   PMID:25525152   PMID:26206133   PMID:32187520  


Genomics

Comparative Map Data
Rbm7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39948,399,997 - 48,406,630 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl948,400,001 - 48,406,599 (-)EnsemblGRCm39 Ensembl
GRCm38948,488,697 - 48,495,330 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl948,488,701 - 48,495,299 (-)EnsemblGRCm38mm10GRCm38
MGSCv37948,296,814 - 48,303,410 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36948,240,676 - 48,247,272 (-)NCBIMGSCv36mm8
Celera945,785,707 - 45,792,303 (-)NCBICelera
Cytogenetic Map9A5.3NCBI
cM Map926.43NCBI
RBM7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811114,400,666 - 114,410,607 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11114,400,030 - 114,414,203 (+)EnsemblGRCh38hg38GRCh38
GRCh3711114,271,388 - 114,281,329 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611113,776,594 - 113,784,845 (+)NCBINCBI36Build 36hg18NCBI36
Build 3411113,776,593 - 113,784,843NCBI
Celera11111,424,330 - 111,432,572 (+)NCBICelera
Cytogenetic Map11q23.2NCBI
HuRef11110,199,984 - 110,208,225 (+)NCBIHuRef
CHM1_111114,155,373 - 114,163,624 (+)NCBICHM1_1
T2T-CHM13v2.011114,411,085 - 114,421,025 (+)NCBIT2T-CHM13v2.0
Rbm7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8857,728,413 - 57,734,833 (-)NCBIGRCr8
mRatBN7.2848,831,894 - 48,838,399 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl848,831,894 - 48,838,411 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx854,332,523 - 54,338,945 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0852,611,355 - 52,617,777 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0850,475,624 - 50,482,046 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0852,823,094 - 52,828,134 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl852,823,096 - 52,828,134 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0851,415,945 - 51,421,517 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4851,769,353 - 51,774,447 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1851,788,710 - 51,794,301 (-)NCBI
Celera848,391,464 - 48,396,562 (-)NCBICelera
Cytogenetic Map8q23NCBI
Rbm7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541215,996,206 - 16,006,525 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541215,996,206 - 16,004,177 (+)NCBIChiLan1.0ChiLan1.0
RBM7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29115,138,913 - 115,147,776 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111116,233,389 - 116,241,665 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011109,274,678 - 109,284,568 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111113,117,771 - 113,127,613 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11113,117,771 - 113,131,348 (+)Ensemblpanpan1.1panPan2
RBM7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1518,950,393 - 18,959,844 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha518,875,727 - 18,885,227 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0518,897,961 - 18,907,684 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl518,897,968 - 18,907,688 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1519,036,532 - 19,046,065 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0518,937,823 - 18,947,357 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0518,982,529 - 18,992,069 (-)NCBIUU_Cfam_GSD_1.0
Rbm7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494796,458,342 - 96,465,716 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936612240,340 - 247,197 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936612239,618 - 247,277 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBM7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl941,947,589 - 41,956,210 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1941,947,081 - 41,955,683 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2946,923,883 - 46,932,024 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RBM7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11105,806,156 - 105,815,518 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1105,806,228 - 105,816,356 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604320,227,547 - 20,236,882 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rbm7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247849,878,068 - 9,884,905 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247849,878,068 - 9,885,874 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rbm7
254 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:210
Count of miRNA genes:182
Interacting mature miRNAs:198
Transcripts:ENSMUST00000170000
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301782Chol11_mcholesterol 11 (mouse)Not determined92929292963293072Mouse
4141754Fecq4_mfecundity QTL 4 (mouse)Not determined94754302457805204Mouse
11532712Sluc39d_msusceptibility to lung cancer 39d (mouse)92558748559587581Mouse
12790986Pcho9_mplasma cholesterol 9 (mouse)93809957572099575Mouse
13504834Hdlq109_mHDL QTL 109 (mouse)91670964150709641Mouse
1357465Vtbt6_mvertebral trabecular bone trait 6 (mouse)Not determined91697884050978943Mouse
12790993Adq1_maortic diameter QTL 1 (mouse)91574962749749627Mouse
12790992Arlsq1_maortic root lesion size QTL 1 (mouse)93809957572099575Mouse
12790997Adq2_maortic diameter QTL 2 (mouse)91574962749749627Mouse
1301252Etohc3_methanol consumption 3 (mouse)Not determined93503447869034599Mouse
1357709Si5lq3_mserum IGFBP-5 level QTL 3 (mouse)Not determined93311102567111140Mouse
12791002Arlsq2_maortic root lesion size QTL 2 (mouse)93809957572099575Mouse
1301558Stheal8_msoft tissue heal 8 (mouse)Not determined94348071477480860Mouse
1301045Sluc10_msusceptibility to lung cancer 10 (mouse)Not determined92030619754306370Mouse
1357746Vtbt7_mvertebral trabecular bone trait 7 (mouse)Not determined93073991564740021Mouse
4141591Cq4_mcholesterol QTL 4 (mouse)Not determined91541175149411890Mouse
1301435Trigq1_mtriglyceride QTL 1 (mouse)Not determined94442817478428262Mouse
1301439Morph2_mmorphine antinociception 2 (mouse)Not determined92015336254153492Mouse
4142352Lmr17_mleishmaniasis resistance 17 (mouse)Not determined92030619754306370Mouse
12904939Edlmmq8_mextensor digitorum longus muscle mass QTL 8 (mouse)92085274054852740Mouse
1301692Hts_mhypothermia sensitivity (mouse)Not determined93251117266511421Mouse
1558968Tbdr1_mbody temperature response to dietary restriction, QTL 1 (mouse)Not determined93503447869034599Mouse
1300643Pvcan2_mprotection against vaginal candidiasis 2 (mouse)Not determined91994340653943525Mouse
4141071Ath29_matherosclerosis 29 (mouse)Not determined94041959474607925Mouse
13432191Actrse4_mactivity response to saline/ethanol 4 (mouse)94370321448603195Mouse
4141323Ptnu3_mproteinuria 3 (mouse)Not determined93288970266889836Mouse
10045613Rapop7_mradiation-induced apoptosis 6 (mouse)Not determined93673624349420511Mouse
10043950Pbft5_mpercent body fat 5 (mouse)Not determined92030619754306370Mouse
11532696Sluc39c_msusceptibility to lung cancer 39c (mouse)92558748559587581Mouse
1302180Actd4_mactivity-distance traveled 4 (mouse)Not determined93243456366434857Mouse
4141447Cfmq2_mcystic fibrosis modifier QTL 2 (mouse)Not determined91541175149411890Mouse
11532695Sluc39b_msusceptibility to lung cancer 39b (mouse)92558748559587581Mouse
11532694Sluc39a_msusceptibility to lung cancer 39a (mouse)92558748559587581Mouse
13208563Bmiq8_mbody mass index QTL 8 (mouse)92491129668907282Mouse
4141572Ntta3_mneurotensin transcript abundance 3 (mouse)Not determined4659767165831177Mouse
1301421Lgth4_mbody length 4 (mouse)Not determined91541175149411890Mouse
10043867Mtbcq9_mmultiple trait body composition QTL 9 (mouse)Not determined92679642160796552Mouse
1558993Tdmq1_mtype 2 diabetes modifying QTL 1 (mouse)Not determined94041959451808670Mouse
1301972Cocrb8_mcocaine related behavior 8 (mouse)Not determined93503447869034599Mouse
10043987Stheal13_msoft tissue heal 13 (mouse)Not determined92679642160796552Mouse
1558872Ibdq1_minflammatory bowel disease QTL 1 (mouse)Not determined93397884073439255Mouse
1357637Si5lq2_mserum IGFBP-5 level QTL 2 (mouse)Not determined91541175149411890Mouse
12738449Spcq2_msperm count QTL 2 (mouse)93939988573399885Mouse
1301702Brm1_mbrachyury modifier 1 (mouse)Not determined94080504774805204Mouse
1300932Hdlq17_mHDL QTL 17 (mouse)Not determined92679642160796552Mouse
10043971Obq32_mobesity QTL 32 (mouse)Not determined93781952871819528Mouse
12880415V125Dq7_mvitamin D active form serum level QTL 7 (mouse)91601129650011296Mouse
10043847Hdlq89_mHDL QTL 89 (mouse)Not determined92929292963293072Mouse
10045639Heal28_mwound healing/regeneration 28 (mouse)Not determined94348071477480860Mouse
13524527Bodwtq8_mbody wweight QTL 8 (mouse)94796321550293195Mouse
4141148Cq5_mcholesterol QTL 5 (mouse)Not determined93245242166452546Mouse
12880416V125Dq8_mvitamin D active form serum level QTL 8 (mouse)91601129650011296Mouse
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93730619798701707Mouse
1301365Ap5q_malcohol preference 5 QTL (mouse)Not determined93005316464053277Mouse
1301883Skull12_mskull morphology 12 (mouse)Not determined92030619754306370Mouse
11354951Pdcc3_mplasmacytoid dentritic cell compartment 3 (mouse)91574962749749627Mouse
1301501Lmr2_mleishmaniasis resistance 2 (mouse)Not determined93694340650111140Mouse
10043878Adip20_madiposity 20 (mouse)Not determined92725119461251323Mouse

Markers in Region
RH135924  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38948,488,756 - 48,488,945UniSTSGRCm38
GRCm38866,847,261 - 66,847,452UniSTSGRCm38
MGSCv37948,296,861 - 48,297,050UniSTSGRCm37
MGSCv37869,371,160 - 69,371,351UniSTSGRCm37
Celera945,785,754 - 45,785,943UniSTS
Celera869,407,039 - 69,407,230UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map9A5.3UniSTS
AW554393  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38948,488,800 - 48,488,937UniSTSGRCm38
GRCm38866,847,269 - 66,847,408UniSTSGRCm38
MGSCv37948,296,905 - 48,297,042UniSTSGRCm37
MGSCv37869,371,168 - 69,371,307UniSTSGRCm37
Celera945,785,798 - 45,785,935UniSTS
Celera869,407,047 - 69,407,186UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map8B3.3UniSTS
Whitehead/MRC_RH9508.98UniSTS
AU041934  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38948,489,384 - 48,489,631UniSTSGRCm38
MGSCv37948,297,489 - 48,297,736UniSTSGRCm37
Celera945,786,382 - 45,786,629UniSTS
Cytogenetic Map9A5.3UniSTS
Whitehead/MRC_RH9513.12UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001326355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001326356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_144948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_037589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_136937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA178228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC160992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF458961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI853382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK005200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK005998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK006755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK015662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC054774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC116931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC119038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY087243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000170000   ⟹   ENSMUSP00000126374
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl948,400,001 - 48,406,597 (-)Ensembl
GRCm38.p6 Ensembl948,488,701 - 48,495,297 (-)Ensembl
Ensembl Acc Id: ENSMUST00000213276   ⟹   ENSMUSP00000149397
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl948,400,001 - 48,406,594 (-)Ensembl
GRCm38.p6 Ensembl948,488,701 - 48,495,294 (-)Ensembl
Ensembl Acc Id: ENSMUST00000213525
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl948,403,897 - 48,406,599 (-)Ensembl
GRCm38.p6 Ensembl948,492,597 - 48,495,299 (-)Ensembl
Ensembl Acc Id: ENSMUST00000214923   ⟹   ENSMUSP00000150767
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl948,400,009 - 48,406,594 (-)Ensembl
GRCm38.p6 Ensembl948,488,709 - 48,495,294 (-)Ensembl
RefSeq Acc Id: NM_001326355   ⟹   NP_001313284
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39948,399,997 - 48,406,630 (-)NCBI
GRCm38948,488,697 - 48,495,330 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001326356   ⟹   NP_001313285
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39948,399,997 - 48,406,630 (-)NCBI
GRCm38948,488,697 - 48,495,330 (-)NCBI
Sequence:
RefSeq Acc Id: NM_144948   ⟹   NP_659197
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39948,399,997 - 48,406,630 (-)NCBI
GRCm38948,488,697 - 48,495,330 (-)NCBI
MGSCv37948,296,814 - 48,303,410 (-)RGD
Celera945,785,695 - 45,792,328 (-)ENTREZGENE
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_037589
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39948,399,997 - 48,406,630 (-)NCBI
GRCm38948,488,697 - 48,495,330 (-)NCBI
Celera945,785,695 - 45,792,328 (-)ENTREZGENE
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_136937
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39948,399,997 - 48,406,630 (-)NCBI
GRCm38948,488,697 - 48,495,330 (-)NCBI
Sequence:
RefSeq Acc Id: NP_659197   ⟸   NM_144948
- Peptide Label: isoform 1
- UniProtKB: Q3UB91 (UniProtKB/Swiss-Prot),   Q7TQE3 (UniProtKB/Swiss-Prot),   Q9CQT2 (UniProtKB/Swiss-Prot),   Q14A95 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001313285   ⟸   NM_001326356
- Peptide Label: isoform 3
- UniProtKB: Q3U5M9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001313284   ⟸   NM_001326355
- Peptide Label: isoform 2
- UniProtKB: A0A1L1SRC3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000126374   ⟸   ENSMUST00000170000
Ensembl Acc Id: ENSMUSP00000149397   ⟸   ENSMUST00000213276
Ensembl Acc Id: ENSMUSP00000150767   ⟸   ENSMUST00000214923
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9CQT2-F1-model_v2 AlphaFold Q9CQT2 1-265 view protein structure

Promoters
RGD ID:6845029
Promoter ID:MM_KWN:57249
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_4Hour,   MEF_B6
Transcripts:UC009PID.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36948,302,321 - 48,303,097 (-)MPROMDB
RGD ID:6845034
Promoter ID:MM_KWN:57250
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000048956,   NM_001004191,   UC009PIC.1,   UC009PIF.1,   UC009PIG.1,   UC009PIH.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36948,303,266 - 48,303,766 (-)MPROMDB
RGD ID:8669506
Promoter ID:EPDNEW_M12784
Type:initiation region
Name:Rbm7_1
Description:Mus musculus RNA binding motif protein 7 , transcript variant4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38948,495,292 - 48,495,352EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1914260 AgrOrtholog
Ensembl Genes ENSMUSG00000042396 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000170000 ENTREZGENE
  ENSMUST00000170000.4 UniProtKB/Swiss-Prot
  ENSMUST00000213276.2 UniProtKB/TrEMBL
  ENSMUST00000214923 ENTREZGENE
  ENSMUST00000214923.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro NEXT_complex_subunit UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBM7_RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:67010 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1914260 ENTREZGENE
NCBI Gene 67010 ENTREZGENE
PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNA-BINDING PROTEIN 7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rbm7 PhenoGen
PROSITE RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1L1SRC3 ENTREZGENE, UniProtKB/TrEMBL
  A0A1L1SUJ3_MOUSE UniProtKB/TrEMBL
  Q14A95 ENTREZGENE, UniProtKB/TrEMBL
  Q3U5M9 ENTREZGENE, UniProtKB/TrEMBL
  Q3UB91 ENTREZGENE
  Q7TQE3 ENTREZGENE
  Q9CQT2 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q3UB91 UniProtKB/Swiss-Prot
  Q7TQE3 UniProtKB/Swiss-Prot