LDB2 (LIM domain binding 2) - Rat Genome Database

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Gene: LDB2 (LIM domain binding 2) Homo sapiens
Analyze
Symbol: LDB2
Name: LIM domain binding 2
RGD ID: 1317395
HGNC Page HGNC:6533
Description: Predicted to enable LIM domain binding activity and transcription coregulator activity. Predicted to be involved in several processes, including regulation of cell migration; regulation of kinase activity; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including epithelial structure maintenance; hair follicle development; and somatic stem cell population maintenance. Located in nucleolus; nucleoplasm; and plasma membrane.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: carboxyl-terminal LIM domain-binding protein 1; CLIM-1; CLIM1; LDB-2; LDB1; LIM binding domain 2; LIM domain-binding factor CLIM1; LIM domain-binding factor-2; LIM domain-binding protein 2
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38416,501,541 - 16,898,645 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl416,501,541 - 16,898,678 (-)EnsemblGRCh38hg38GRCh38
GRCh37416,503,164 - 16,900,268 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36416,112,262 - 16,509,425 (-)NCBINCBI36Build 36hg18NCBI36
Build 34416,179,434 - 16,576,596NCBI
Celera416,968,377 - 17,365,469 (-)NCBICelera
Cytogenetic Map4p15.32NCBI
HuRef415,852,373 - 16,253,922 (-)NCBIHuRef
CHM1_1416,501,239 - 16,898,326 (-)NCBICHM1_1
T2T-CHM13v2.0416,483,292 - 16,880,253 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 20 of 85 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
LDB2Human(1->4)-beta-D-glucan multiple interactionsISORGD:13173966480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of LDB2 mRNACTDPMID:36331819
LDB2Human1,1,1-trichloroethane increases expressionISORGD:131739664804641,1,1-trichloroethane results in increased expression of LDB2 mRNACTDPMID:25270620
LDB2Human1,1-dichloroethene decreases expressionISORGD:13173966480464vinylidene chloride results in decreased expression of LDB2 mRNACTDPMID:26682919
LDB2Human1,2-dimethylhydrazine decreases expressionISORGD:131739664804641,2-Dimethylhydrazine results in decreased expression of LDB2 mRNACTDPMID:22206623
LDB2Human17alpha-ethynylestradiol affects expressionISORGD:13173966480464Ethinyl Estradiol affects the expression of LDB2 mRNACTDPMID:17555576
LDB2Human2,3,7,8-tetrachlorodibenzodioxine decreases expressionISORGD:13079216480464Tetrachlorodibenzodioxin results in decreased expression of LDB2 mRNACTDPMID:32109520
LDB2Human2,3,7,8-tetrachlorodibenzodioxine increases expressionISORGD:13079216480464Tetrachlorodibenzodioxin results in increased expression of LDB2 mRNACTDPMID:34747641
LDB2Human3-isobutyl-1-methyl-7H-xanthine multiple interactionsEXP 6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] more ...CTDPMID:28628672
LDB2Human4,4'-sulfonyldiphenol affects expressionISORGD:13173966480464bisphenol S affects the expression of LDB2 mRNACTDPMID:30951980
LDB2Human4-hydroxyphenyl retinamide increases expressionISORGD:13173966480464Fenretinide results in increased expression of LDB2 mRNACTDPMID:28973697
LDB2Human6-propyl-2-thiouracil increases expressionISORGD:13079216480464Propylthiouracil results in increased expression of LDB2 mRNACTDPMID:24780913
LDB2Humanacrylamide decreases expressionISORGD:13079216480464Acrylamide results in decreased expression of LDB2 mRNACTDPMID:28959563
LDB2Humanaflatoxin B1 affects expressionEXP 6480464Aflatoxin B1 affects the expression of LDB2 proteinCTDPMID:20106945
LDB2Humanaflatoxin B1 decreases methylationEXP 6480464Aflatoxin B1 results in decreased methylation of LDB2 intronCTDPMID:30157460
LDB2HumanAflatoxin B2 alpha increases methylationEXP 6480464aflatoxin B2 results in increased methylation of LDB2 intronCTDPMID:30157460
LDB2Humanantirheumatic drug increases expressionEXP 6480464Antirheumatic Agents results in increased expression of LDB2 mRNACTDPMID:24449571
LDB2Humanarsenous acid decreases expressionEXP 6480464Arsenic Trioxide results in decreased expression of LDB2 mRNACTDPMID:26705709
LDB2Humanatrazine affects methylationISORGD:13079216480464Atrazine affects the methylation of LDB2 geneCTDPMID:28931070
LDB2Humanbenzo[a]pyrene decreases expressionEXP 6480464Benzo(a)pyrene results in decreased expression of LDB2 mRNACTDPMID:20106945|PMID:32234424
LDB2Humanbenzo[a]pyrene increases methylationISORGD:13173966480464Benzo(a)pyrene results in increased methylation of LDB2 intronCTDPMID:27901495

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Biological Process
1 to 11 of 11 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
LDB2Humanepithelial structure maintenance acts_upstream_of_or_withinIEAUniProtKB:O55203|ensembl:ENSMUSP00000067737150520179 EnsemblGO_REF:0000107
LDB2Humanhair follicle development acts_upstream_of_or_withinIEAUniProtKB:O55203|ensembl:ENSMUSP00000067737150520179 EnsemblGO_REF:0000107
LDB2Humannegative regulation of transcription by RNA polymerase II involved_inIBAPANTHER:PTN001623859|UniProtKB:F2Z5G6|WB:WBGene00002261150520179 GO_CentralGO_REF:0000033
LDB2Humannervous system development involved_inIBAFB:FBgn0013764|MGI:894762|PANTHER:PTN000822352|WB:WBGene00002261150520179 GO_CentralGO_REF:0000033
LDB2Humanpositive regulation of cellular component biogenesis acts_upstream_of_or_withinIEAUniProtKB:O55203|ensembl:ENSMUSP00000067737150520179 EnsemblGO_REF:0000107
LDB2Humanpositive regulation of transcription by RNA polymerase II involved_inIBAFB:FBgn0013764|MGI:894670|MGI:894762|PANTHER:PTN001623859|UniProtKB:Q86U70|WB:WBGene00002261150520179 GO_CentralGO_REF:0000033
LDB2Humanpositive regulation of transcription by RNA polymerase II acts_upstream_of_or_withinIEAUniProtKB:O55203|ensembl:ENSMUSP00000067737150520179 EnsemblGO_REF:0000107
LDB2Humanregulation of cell migration involved_inISSUniProtKB:O55203150520179 UniProtGO_REF:0000024
LDB2Humanregulation of cell migration involved_inIEAUniProtKB:O55203|ensembl:ENSMUSP00000067737150520179 EnsemblGO_REF:0000107
LDB2Humanregulation of kinase activity involved_inISSUniProtKB:O55203150520179 UniProtGO_REF:0000024
LDB2Humansomatic stem cell population maintenance acts_upstream_of_or_withinIEAUniProtKB:O55203|ensembl:ENSMUSP00000067737150520179 EnsemblGO_REF:0000107
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Cellular Component
1 to 11 of 11 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
LDB2Humancell leading edge located_inIEAUniProtKB:O55203|ensembl:ENSMUSP00000067737150520179 EnsemblGO_REF:0000107
LDB2Humancell leading edge located_inISSUniProtKB:O55203150520179 UniProtGO_REF:0000024
LDB2Humannucleolus located_inIDA 150520179 HPAGO_REF:0000052
LDB2Humannucleoplasm located_inIDA 150520179 HPAGO_REF:0000052
LDB2Humannucleus located_inIEAUniProtKB-SubCell:SL-0191150520179 UniProtGO_REF:0000044
LDB2Humannucleus located_inIDA 150520179 PMID:9853615UniProtPMID:9853615
LDB2Humannucleus is_active_inIBAFB:FBgn0013764|MGI:894762|PANTHER:PTN001623859|UniProtKB:O43679|UniProtKB:Q86U70|ZFIN:ZDB-GENE-990415-138150520179 GO_CentralGO_REF:0000033
LDB2Humannucleus located_inIEAUniProtKB-KW:KW-0539150520179 UniProtGO_REF:0000043
LDB2Humanplasma membrane located_inIDA 150520179 HPAGO_REF:0000052
LDB2Humantranscription regulator complex part_ofIEAUniProtKB:O55203|ensembl:ENSMUSP00000067737150520179 EnsemblGO_REF:0000107
LDB2Humantranscription regulator complex part_ofIBAMGI:894670|MGI:894762|PANTHER:PTN001623859|UniProtKB:Q86U70150520179 GO_CentralGO_REF:0000033
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Molecular Function
1 to 9 of 9 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
LDB2Humanenzyme binding enablesIEAUniProtKB:O55203|ensembl:ENSMUSP00000067737150520179 EnsemblGO_REF:0000107
LDB2HumanLIM domain binding enablesIEAUniRule:UR001503062150520179 UniProtGO_REF:0000104
LDB2HumanLIM domain binding enablesISSUniProtKB:P70662150520179 UniProtGO_REF:0000024
LDB2Humanprotein binding enablesIPIUniProtKB:P61968|UniProtKB:Q9BWW4150520179 PMID:20211142IntActPMID:20211142
LDB2Humanprotein binding enablesIPIUniProtKB:P61968150520179 PMID:15231748IntActPMID:15231748
LDB2Humanprotein binding enablesIPIUniProtKB:O00560|UniProtKB:O15182|UniProtKB:P20618|UniProtKB:P25791-3|UniProtKB:P25800|UniProtKB:P61968|UniProtKB:Q68G74|UniProtKB:Q6DKK2|UniProtKB:Q7L775|UniProtKB:Q86VI1|UniProtKB:Q8TAP4-4|UniProtKB:Q8TBB1|UniProtKB:Q8WUI4-6|UniProtKB:Q969H8|UniProtKB:Q96GM5|UniProtKB:Q96HA8|UniProtKB:Q99598|UniProtKB:Q9BVM4|UniProtKB:Q9BY27|UniProtKB:Q9H6Z9|UniProtKB:Q9NWQ9150520179 PMID:32296183IntActPMID:32296183
LDB2Humanprotein binding enablesIPIUniProtKB:P61968|UniProtKB:Q99598|UniProtKB:Q9BWW4150520179 PMID:18330356IntActPMID:18330356
LDB2Humantranscription coregulator activity enablesIBAMGI:894762|PANTHER:PTN001623859|TAIR:locus:2029137|UniProtKB:F2Z5G6150520179 GO_CentralGO_REF:0000033
LDB2Humantranscription coregulator activity enablesTAS 150520179 PMID:9880598PINCPMID:9880598
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#
Reference Title
Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:8125298   PMID:8918878   PMID:9192866   PMID:9799849   PMID:9853615   PMID:9880598   PMID:10083735   PMID:10431247   PMID:11882901   PMID:12477932   PMID:14702039   PMID:15231748  
PMID:15489334   PMID:16344560   PMID:18330356   PMID:19997623   PMID:20211142   PMID:20379614   PMID:21873635   PMID:23534349   PMID:23585552   PMID:24925974   PMID:25609649   PMID:28946938  
PMID:32296183   PMID:33656268   PMID:33849822   PMID:35914814   PMID:36473369  



LDB2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38416,501,541 - 16,898,645 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl416,501,541 - 16,898,678 (-)EnsemblGRCh38hg38GRCh38
GRCh37416,503,164 - 16,900,268 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36416,112,262 - 16,509,425 (-)NCBINCBI36Build 36hg18NCBI36
Build 34416,179,434 - 16,576,596NCBI
Celera416,968,377 - 17,365,469 (-)NCBICelera
Cytogenetic Map4p15.32NCBI
HuRef415,852,373 - 16,253,922 (-)NCBIHuRef
CHM1_1416,501,239 - 16,898,326 (-)NCBICHM1_1
T2T-CHM13v2.0416,483,292 - 16,880,253 (-)NCBIT2T-CHM13v2.0
Ldb2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39544,593,292 - 44,957,466 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl544,629,474 - 44,957,022 (-)EnsemblGRCm39 Ensembl
GRCm38544,435,955 - 44,799,759 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl544,472,132 - 44,799,680 (-)EnsemblGRCm38mm10GRCm38
MGSCv37544,863,372 - 45,190,946 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36544,760,963 - 45,087,867 (-)NCBIMGSCv36mm8
Celera541,894,726 - 42,234,169 (-)NCBICelera
Cytogenetic Map5B3NCBI
cM Map524.24NCBI
Ldb2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81470,489,243 - 70,810,573 (+)NCBIGRCr8
mRatBN7.21466,277,044 - 66,598,071 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1466,277,085 - 66,597,778 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1470,673,511 - 70,993,888 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01471,957,095 - 72,277,709 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01468,383,948 - 68,704,320 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01470,780,605 - 71,112,857 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1470,780,623 - 71,112,552 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01470,817,435 - 70,817,796 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01470,920,028 - 71,144,813 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41471,374,621 - 71,695,965 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11471,377,028 - 71,698,910 (+)NCBI
Celera1465,250,557 - 65,570,430 (+)NCBICelera
Cytogenetic Map14q21NCBI
Ldb2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554807,199,933 - 7,568,629 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554807,200,111 - 7,568,567 (+)NCBIChiLan1.0ChiLan1.0
LDB2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2316,771,454 - 17,168,732 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1416,969,178 - 17,366,385 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0410,930,160 - 11,327,367 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1416,226,042 - 16,621,851 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl416,227,146 - 16,622,167 (-)Ensemblpanpan1.1panPan2
LDB2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1363,508,721 - 63,883,842 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl363,508,247 - 63,883,717 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha366,026,288 - 66,401,935 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0363,985,593 - 64,361,307 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl363,985,615 - 64,362,099 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1363,476,565 - 63,852,008 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0363,680,390 - 64,055,540 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0364,040,117 - 64,415,250 (+)NCBIUU_Cfam_GSD_1.0
Ldb2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528557,497,602 - 57,837,007 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647711,199,003 - 11,538,728 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647711,199,200 - 11,538,699 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LDB2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl811,641,064 - 12,037,265 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1811,641,060 - 12,037,388 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2811,335,352 - 11,566,827 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LDB2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12733,303,801 - 33,698,460 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604780,035,660 - 80,430,270 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ldb2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475514,962,317 - 15,359,814 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475514,962,538 - 15,358,771 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in LDB2
32 total Variants

1 to 10 of 84 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh38/hg38 4p16.3-15.1(chr4:72555-28066309)x1 copy number loss See cases [RCV000051642] Chr4:72555..28066309 [GRCh38]
Chr4:72447..28067931 [GRCh37]
Chr4:62447..27677029 [NCBI36]
Chr4:4p16.3-15.1
pathogenic
GRCh38/hg38 4p15.33-15.31(chr4:14061129-20121834)x1 copy number loss See cases [RCV000051220] Chr4:14061129..20121834 [GRCh38]
Chr4:14062753..20123457 [GRCh37]
Chr4:13671851..19732555 [NCBI36]
Chr4:4p15.33-15.31
pathogenic
GRCh38/hg38 4p16.3-15.2(chr4:51519-26519788)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051752]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051752]|See cases [RCV000051752] Chr4:51519..26519788 [GRCh38]
Chr4:51413..26521410 [GRCh37]
Chr4:41413..26130508 [NCBI36]
Chr4:4p16.3-15.2
pathogenic
GRCh38/hg38 4p16.3-15.1(chr4:72555-33130620)x3 copy number gain See cases [RCV000051753] Chr4:72555..33130620 [GRCh38]
Chr4:72447..33132242 [GRCh37]
Chr4:62447..32808637 [NCBI36]
Chr4:4p16.3-15.1
pathogenic
GRCh38/hg38 4p16.3-14(chr4:85149-38700366)x3 copy number gain See cases [RCV000051757] Chr4:85149..38700366 [GRCh38]
Chr4:85040..38701987 [GRCh37]
Chr4:75040..38378382 [NCBI36]
Chr4:4p16.3-14
pathogenic
GRCh38/hg38 4p15.33-15.31(chr4:14659764-18274924)x3 copy number gain See cases [RCV000051769] Chr4:14659764..18274924 [GRCh38]
Chr4:14661388..18276547 [GRCh37]
Chr4:14270486..17885645 [NCBI36]
Chr4:4p15.33-15.31
pathogenic
GRCh38/hg38 4p16.3-15.2(chr4:85149-22450018)x3 copy number gain See cases [RCV000051755] Chr4:85149..22450018 [GRCh38]
Chr4:85040..22451641 [GRCh37]
Chr4:75040..22060739 [NCBI36]
Chr4:4p16.3-15.2
pathogenic
GRCh38/hg38 4p16.3-15.32(chr4:85149-17486742)x1 copy number loss See cases [RCV000051679] Chr4:85149..17486742 [GRCh38]
Chr4:85040..17488365 [GRCh37]
Chr4:75040..17097463 [NCBI36]
Chr4:4p16.3-15.32
pathogenic
NM_001130834.2(LDB2):c.615+29471T>G single nucleotide variant Lung cancer [RCV000094285] Chr4:16556451 [GRCh38]
Chr4:16558074 [GRCh37]
Chr4:4p15.32
uncertain significance
NM_001130834.2(LDB2):c.236-7334A>G single nucleotide variant Lung cancer [RCV000094288] Chr4:16603209 [GRCh38]
Chr4:16604832 [GRCh37]
Chr4:4p15.32
uncertain significance
1 to 10 of 84 rows

Predicted Target Of
Summary Value
Count of predictions:4773
Count of miRNA genes:976
Interacting mature miRNAs:1182
Transcripts:ENST00000304523, ENST00000441778, ENST00000502640, ENST00000503153, ENST00000503178, ENST00000503829, ENST00000504189, ENST00000504886, ENST00000506732, ENST00000507464, ENST00000508804, ENST00000508918, ENST00000509803, ENST00000510825, ENST00000512345, ENST00000513457, ENST00000515064
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 39 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597095829GWAS1191903_Hprotein measurement QTL GWAS1191903 (human)7e-09protein measurement41654552116545522Human
596972433GWAS1091952_Hradiation-induced disorder QTL GWAS1091952 (human)0.000004radiation-induced disorder41661608916616090Human
597212703GWAS1308777_Hprotein measurement QTL GWAS1308777 (human)4e-09protein measurement41654552116545522Human
597060380GWAS1156454_Hmetabolic syndrome QTL GWAS1156454 (human)5e-09metabolic syndrome41688567116885672Human
597060379GWAS1156453_Hmetabolic syndrome QTL GWAS1156453 (human)9e-09metabolic syndrome41659917016599171Human
597173640GWAS1269714_Hbody mass index QTL GWAS1269714 (human)1e-09body mass indexbody mass index (BMI) (CMO:0000105)41659904116599042Human
597173641GWAS1269715_Hbody mass index QTL GWAS1269715 (human)9e-09body mass indexbody mass index (BMI) (CMO:0000105)41686013216860133Human
597276427GWAS1372501_Hinsomnia QTL GWAS1372501 (human)4e-08insomnia41672599416725995Human
597143748GWAS1239822_Hsevere acute respiratory syndrome, COVID-19 QTL GWAS1239822 (human)0.0000003severe acute respiratory syndrome, COVID-1941652517116525172Human
597276426GWAS1372500_Hinsomnia QTL GWAS1372500 (human)2e-10insomnia41672516316725164Human

1 to 10 of 39 rows
D4S1525  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37416,583,446 - 16,583,709UniSTSGRCh37
Build 36416,192,544 - 16,192,807RGDNCBI36
Celera417,048,518 - 17,048,807RGD
Cytogenetic Map4p16UniSTS
HuRef415,937,073 - 15,937,328UniSTS
Marshfield Genetic Map429.68UniSTS
Marshfield Genetic Map429.68RGD
deCODE Assembly Map431.19UniSTS
D4S590  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37416,814,138 - 16,814,479UniSTSGRCh37
Build 36416,423,236 - 16,423,577RGDNCBI36
Celera417,279,228 - 17,279,567RGD
Cytogenetic Map4p16UniSTS
HuRef416,167,514 - 16,167,853UniSTS
D4S599  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37416,814,095 - 16,814,472UniSTSGRCh37
Build 36416,423,193 - 16,423,570RGDNCBI36
Celera417,279,185 - 17,279,560RGD
Cytogenetic Map4p16UniSTS
HuRef416,167,471 - 16,167,846UniSTS
TNG Radiation Hybrid Map411008.0UniSTS
Stanford-G3 RH Map41058.0UniSTS
NCBI RH Map4158.3UniSTS
RH121731  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37416,516,016 - 16,516,357UniSTSGRCh37
Build 36416,125,114 - 16,125,455RGDNCBI36
Celera416,981,232 - 16,981,573RGD
Cytogenetic Map4p16UniSTS
HuRef415,865,227 - 15,865,568UniSTS
TNG Radiation Hybrid Map410843.0UniSTS
RH123952  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37416,677,143 - 16,677,428UniSTSGRCh37
Build 36416,286,241 - 16,286,526RGDNCBI36
Celera417,142,247 - 17,142,532RGD
Cytogenetic Map4p16UniSTS
HuRef416,030,643 - 16,030,928UniSTS
TNG Radiation Hybrid Map410929.0UniSTS
D4S731  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37416,858,872 - 16,859,035UniSTSGRCh37
Build 36416,467,970 - 16,468,133RGDNCBI36
Celera417,323,973 - 17,324,136RGD
Cytogenetic Map4p16UniSTS
HuRef416,212,366 - 16,212,529UniSTS
SHGC-149811  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37416,585,574 - 16,585,845UniSTSGRCh37
Build 36416,194,672 - 16,194,943RGDNCBI36
Celera417,050,672 - 17,050,943RGD
Cytogenetic Map4p16UniSTS
HuRef415,939,193 - 15,939,464UniSTS
TNG Radiation Hybrid Map410888.0UniSTS
GDB:3755021  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37416,833,425 - 16,833,507UniSTSGRCh37
Build 36416,442,523 - 16,442,605RGDNCBI36
Celera417,298,513 - 17,298,595RGD
Cytogenetic Map4p16UniSTS
HuRef416,186,905 - 16,186,987UniSTS
SHGC-67928  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37416,639,015 - 16,639,201UniSTSGRCh37
Build 36416,248,113 - 16,248,299RGDNCBI36
Celera417,104,114 - 17,104,300RGD
Cytogenetic Map4p16UniSTS
HuRef415,992,514 - 15,992,700UniSTS
TNG Radiation Hybrid Map410910.0UniSTS
GeneMap99-GB4 RH Map473.05UniSTS
SHGC-155343  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37416,744,199 - 16,744,524UniSTSGRCh37
Build 36416,353,297 - 16,353,622RGDNCBI36
Celera417,209,284 - 17,209,609RGD
Cytogenetic Map4p16UniSTS
HuRef416,097,726 - 16,098,051UniSTS
TNG Radiation Hybrid Map410947.0UniSTS
SHGC-156280  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37416,708,186 - 16,708,376UniSTSGRCh37
Build 36416,317,284 - 16,317,474RGDNCBI36
Celera417,173,277 - 17,173,467RGD
Cytogenetic Map4p16UniSTS
HuRef416,061,708 - 16,061,898UniSTS
TNG Radiation Hybrid Map410940.0UniSTS
LDB2_2122  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37416,502,976 - 16,503,823UniSTSGRCh37
Build 36416,112,074 - 16,112,921RGDNCBI36
Celera416,968,189 - 16,969,036RGD
HuRef415,852,185 - 15,853,032UniSTS
AB046090  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37416,547,668 - 16,547,810UniSTSGRCh37
Build 36416,156,766 - 16,156,908RGDNCBI36
Celera417,012,865 - 17,013,007RGD
HuRef415,897,254 - 15,897,396UniSTS
SHGC-59820  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37416,832,876 - 16,833,028UniSTSGRCh37
Build 36416,441,974 - 16,442,126RGDNCBI36
Celera417,297,964 - 17,298,116RGD
Cytogenetic Map4p16UniSTS
HuRef416,186,356 - 16,186,508UniSTS
GeneMap99-GB4 RH Map478.23UniSTS
G09887  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37416,718,723 - 16,718,903UniSTSGRCh37
Build 36416,327,821 - 16,328,001RGDNCBI36
Celera417,183,814 - 17,183,994RGD
Cytogenetic Map4p16UniSTS
HuRef416,072,249 - 16,072,429UniSTS
SHGC-50314  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37416,583,683 - 16,583,800UniSTSGRCh37
Build 36416,192,781 - 16,192,898RGDNCBI36
Celera417,048,781 - 17,048,898RGD
Cytogenetic Map4p16UniSTS
HuRef415,937,302 - 15,937,419UniSTS
TNG Radiation Hybrid Map410891.0UniSTS
G34137  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37416,858,673 - 16,858,874UniSTSGRCh37
Build 36416,467,771 - 16,467,972RGDNCBI36
Celera417,323,774 - 17,323,975RGD
Cytogenetic Map4p16UniSTS
HuRef416,212,167 - 16,212,368UniSTS
D4S2642  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37416,519,395 - 16,519,636UniSTSGRCh37
Build 36416,128,493 - 16,128,734RGDNCBI36
Celera416,984,606 - 16,984,847RGD
Cytogenetic Map4p16UniSTS
HuRef415,868,601 - 15,868,838UniSTS
Marshfield Genetic Map429.68UniSTS
Whitehead-YAC Contig Map4 UniSTS
LDB2  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37416,510,167 - 16,510,306UniSTSGRCh37
Celera416,975,383 - 16,975,522UniSTS
HuRef415,859,379 - 15,859,518UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2340 2788 2232 4922 1711 2179 3 612 1441 451 2234 6680 5962 44 3720 1 805 1663 1461 168 1


1 to 30 of 78 rows
RefSeq Transcripts NM_001130834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001304434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001304435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_130734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005248197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005248201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005248202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006713975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006713976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006713977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006713978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006713979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006713980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006713981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006713982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006713983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011513905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017008812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017008813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017008814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017008815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017008816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017008817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017008818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017008819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017008820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017008821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017008822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024454278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 78 rows

Ensembl Acc Id: ENST00000304523   ⟹   ENSP00000306772
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl416,501,541 - 16,898,645 (-)Ensembl
Ensembl Acc Id: ENST00000441778   ⟹   ENSP00000392089
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl416,501,541 - 16,898,594 (-)Ensembl
Ensembl Acc Id: ENST00000502640   ⟹   ENSP00000423963
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl416,501,546 - 16,898,634 (-)Ensembl
Ensembl Acc Id: ENST00000503153
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl416,512,005 - 16,653,819 (-)Ensembl
Ensembl Acc Id: ENST00000503829
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl416,585,976 - 16,626,993 (-)Ensembl
Ensembl Acc Id: ENST00000504189
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl416,750,850 - 16,898,378 (-)Ensembl
Ensembl Acc Id: ENST00000504886
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl416,585,950 - 16,726,502 (-)Ensembl
Ensembl Acc Id: ENST00000506732   ⟹   ENSP00000421767
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl416,585,972 - 16,898,660 (-)Ensembl
Ensembl Acc Id: ENST00000507464   ⟹   ENSP00000425754
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl416,502,042 - 16,595,875 (-)Ensembl
Ensembl Acc Id: ENST00000508804
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl416,588,709 - 16,759,375 (-)Ensembl
Ensembl Acc Id: ENST00000508918   ⟹   ENSP00000424770
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl416,502,794 - 16,898,634 (-)Ensembl
Ensembl Acc Id: ENST00000509803
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl416,501,544 - 16,507,227 (-)Ensembl
Ensembl Acc Id: ENST00000510825
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl416,741,455 - 16,898,678 (-)Ensembl
Ensembl Acc Id: ENST00000512345   ⟹   ENSP00000424676
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl416,511,985 - 16,898,621 (-)Ensembl
Ensembl Acc Id: ENST00000513457
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl416,588,710 - 16,826,560 (-)Ensembl
Ensembl Acc Id: ENST00000515064   ⟹   ENSP00000422552
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl416,501,541 - 16,898,562 (-)Ensembl
RefSeq Acc Id: NM_001130834   ⟹   NP_001124306
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,501,541 - 16,898,645 (-)NCBI
GRCh37416,503,164 - 16,900,424 (-)RGD
Celera416,968,377 - 17,365,469 (-)RGD
HuRef415,852,373 - 16,253,922 (-)RGD
CHM1_1416,501,232 - 16,898,334 (-)NCBI
T2T-CHM13v2.0416,483,292 - 16,880,253 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001290   ⟹   NP_001281
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,501,541 - 16,898,645 (-)NCBI
GRCh37416,503,164 - 16,900,424 (-)RGD
Build 36416,112,262 - 16,509,425 (-)NCBI Archive
Celera416,968,377 - 17,365,469 (-)RGD
HuRef415,852,373 - 16,253,922 (-)RGD
CHM1_1416,501,232 - 16,898,334 (-)NCBI
T2T-CHM13v2.0416,483,292 - 16,880,253 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001304434   ⟹   NP_001291363
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,501,541 - 16,898,645 (-)NCBI
CHM1_1416,501,232 - 16,898,334 (-)NCBI
T2T-CHM13v2.0416,483,292 - 16,880,253 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001304435   ⟹   NP_001291364
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,501,541 - 16,898,645 (-)NCBI
CHM1_1416,501,232 - 16,898,334 (-)NCBI
T2T-CHM13v2.0416,483,292 - 16,880,253 (-)NCBI
Sequence:
RefSeq Acc Id: NR_130734
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,750,850 - 16,898,645 (-)NCBI
CHM1_1416,750,540 - 16,898,334 (-)NCBI
T2T-CHM13v2.0416,732,654 - 16,880,253 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005248197   ⟹   XP_005248254
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,501,541 - 16,898,645 (-)NCBI
GRCh37416,503,164 - 16,900,424 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006713975   ⟹   XP_006714038
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,501,541 - 16,898,645 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006713976   ⟹   XP_006714039
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,501,541 - 16,898,645 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006713977   ⟹   XP_006714040
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,501,541 - 16,898,645 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006713982   ⟹   XP_006714045
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,501,541 - 16,898,645 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006713983   ⟹   XP_006714046
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,501,541 - 16,898,645 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017008812   ⟹   XP_016864301
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,501,541 - 16,898,645 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017008813   ⟹   XP_016864302
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,501,541 - 16,898,645 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017008815   ⟹   XP_016864304
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,501,541 - 16,898,645 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017008816   ⟹   XP_016864305
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,501,541 - 16,898,645 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017008818   ⟹   XP_016864307
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,501,541 - 16,778,923 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017008819   ⟹   XP_016864308
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,501,541 - 16,898,645 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017008820   ⟹   XP_016864309
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,501,541 - 16,898,645 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017008821   ⟹   XP_016864310
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,501,541 - 16,898,645 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024454278   ⟹   XP_024310046
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,501,541 - 16,898,645 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024454280   ⟹   XP_024310048
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,501,541 - 16,814,244 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047416390   ⟹   XP_047272346
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,501,541 - 16,752,431 (-)NCBI
RefSeq Acc Id: XM_047416391   ⟹   XP_047272347
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,501,541 - 16,778,911 (-)NCBI
RefSeq Acc Id: XM_054351198   ⟹   XP_054207173
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0416,483,292 - 16,880,253 (-)NCBI
RefSeq Acc Id: XM_054351199   ⟹   XP_054207174
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0416,483,292 - 16,880,253 (-)NCBI
RefSeq Acc Id: XM_054351200   ⟹   XP_054207175
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0416,483,292 - 16,880,253 (-)NCBI
RefSeq Acc Id: XM_054351201   ⟹   XP_054207176
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0416,483,292 - 16,880,253 (-)NCBI
RefSeq Acc Id: XM_054351202   ⟹   XP_054207177
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0416,483,292 - 16,880,253 (-)NCBI
RefSeq Acc Id: XM_054351203   ⟹   XP_054207178
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0416,483,292 - 16,880,253 (-)NCBI
RefSeq Acc Id: XM_054351204   ⟹   XP_054207179
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0416,483,292 - 16,880,253 (-)NCBI
RefSeq Acc Id: XM_054351205   ⟹   XP_054207180
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0416,483,292 - 16,880,253 (-)NCBI
RefSeq Acc Id: XM_054351206   ⟹   XP_054207181
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0416,483,292 - 16,880,253 (-)NCBI
RefSeq Acc Id: XM_054351207   ⟹   XP_054207182
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0416,483,292 - 16,880,253 (-)NCBI
RefSeq Acc Id: XM_054351208   ⟹   XP_054207183
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0416,483,292 - 16,880,253 (-)NCBI
RefSeq Acc Id: XM_054351209   ⟹   XP_054207184
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0416,483,292 - 16,760,696 (-)NCBI
RefSeq Acc Id: XM_054351210   ⟹   XP_054207185
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0416,483,292 - 16,880,253 (-)NCBI
RefSeq Acc Id: XM_054351211   ⟹   XP_054207186
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0416,483,292 - 16,880,253 (-)NCBI
RefSeq Acc Id: XM_054351212   ⟹   XP_054207187
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0416,483,292 - 16,880,253 (-)NCBI
RefSeq Acc Id: XM_054351213   ⟹   XP_054207188
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0416,483,292 - 16,734,227 (-)NCBI
RefSeq Acc Id: XM_054351214   ⟹   XP_054207189
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0416,483,292 - 16,760,684 (-)NCBI
RefSeq Acc Id: XM_054351215   ⟹   XP_054207190
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0416,483,292 - 16,797,564 (-)NCBI
1 to 30 of 60 rows
Protein RefSeqs NP_001124306 (Get FASTA)   NCBI Sequence Viewer  
  NP_001281 (Get FASTA)   NCBI Sequence Viewer  
  NP_001291363 (Get FASTA)   NCBI Sequence Viewer  
  NP_001291364 (Get FASTA)   NCBI Sequence Viewer  
  XP_005248254 (Get FASTA)   NCBI Sequence Viewer  
  XP_006714038 (Get FASTA)   NCBI Sequence Viewer  
  XP_006714039 (Get FASTA)   NCBI Sequence Viewer  
  XP_006714040 (Get FASTA)   NCBI Sequence Viewer  
  XP_006714045 (Get FASTA)   NCBI Sequence Viewer  
  XP_006714046 (Get FASTA)   NCBI Sequence Viewer  
  XP_016864301 (Get FASTA)   NCBI Sequence Viewer  
  XP_016864302 (Get FASTA)   NCBI Sequence Viewer  
  XP_016864304 (Get FASTA)   NCBI Sequence Viewer  
  XP_016864305 (Get FASTA)   NCBI Sequence Viewer  
  XP_016864307 (Get FASTA)   NCBI Sequence Viewer  
  XP_016864308 (Get FASTA)   NCBI Sequence Viewer  
  XP_016864309 (Get FASTA)   NCBI Sequence Viewer  
  XP_016864310 (Get FASTA)   NCBI Sequence Viewer  
  XP_024310046 (Get FASTA)   NCBI Sequence Viewer  
  XP_024310048 (Get FASTA)   NCBI Sequence Viewer  
  XP_047272346 (Get FASTA)   NCBI Sequence Viewer  
  XP_047272347 (Get FASTA)   NCBI Sequence Viewer  
  XP_054207173 (Get FASTA)   NCBI Sequence Viewer  
  XP_054207174 (Get FASTA)   NCBI Sequence Viewer  
  XP_054207175 (Get FASTA)   NCBI Sequence Viewer  
  XP_054207176 (Get FASTA)   NCBI Sequence Viewer  
  XP_054207177 (Get FASTA)   NCBI Sequence Viewer  
  XP_054207178 (Get FASTA)   NCBI Sequence Viewer  
  XP_054207179 (Get FASTA)   NCBI Sequence Viewer  
  XP_054207180 (Get FASTA)   NCBI Sequence Viewer  
1 to 30 of 60 rows
1 to 5 of 48 rows
1 to 5 of 48 rows
RefSeq Acc Id: NP_001281   ⟸   NM_001290
- Peptide Label: isoform a
- UniProtKB: O60619 (UniProtKB/Swiss-Prot),   O75480 (UniProtKB/Swiss-Prot),   O43679 (UniProtKB/Swiss-Prot),   B7Z6D0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001124306   ⟸   NM_001130834
- Peptide Label: isoform b
- UniProtKB: O43679 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_005248254   ⟸   XM_005248197
- Peptide Label: isoform X5
- UniProtKB: B7Z6D0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006714039   ⟸   XM_006713976
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006714040   ⟸   XM_006713977
- Peptide Label: isoform X3
- Sequence:
Name Modeler Protein Id AA Range Protein Structure
AF-O43679-F1-model_v2 AlphaFold O43679 1-373 view protein structure

RGD ID:6867088
Promoter ID:EPDNEW_H6709
Type:initiation region
Name:LDB2_1
Description:LIM domain binding 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H6710  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,898,634 - 16,898,694EPDNEW
RGD ID:6867090
Promoter ID:EPDNEW_H6710
Type:initiation region
Name:LDB2_2
Description:LIM domain binding 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H6709  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,898,779 - 16,898,839EPDNEW


1 to 36 of 36 rows
Database
Acc Id
Source(s)
COSMIC LDB2 COSMIC
Ensembl Genes ENSG00000169744 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000304523 ENTREZGENE
  ENST00000304523.10 UniProtKB/Swiss-Prot
  ENST00000441778 ENTREZGENE
  ENST00000441778.6 UniProtKB/Swiss-Prot
  ENST00000502640 ENTREZGENE
  ENST00000507464 ENTREZGENE
  ENST00000515064 ENTREZGENE
Gene3D-CATH Cysteine Rich Protein UniProtKB/Swiss-Prot
GTEx ENSG00000169744 GTEx
HGNC ID HGNC:6533 ENTREZGENE
Human Proteome Map LDB2 Human Proteome Map
InterPro LID UniProtKB/Swiss-Prot
  LIM-bd/SEUSS UniProtKB/Swiss-Prot
KEGG Report hsa:9079 UniProtKB/Swiss-Prot
NCBI Gene 9079 ENTREZGENE
OMIM 603450 OMIM
PANTHER PTHR10378 UniProtKB/Swiss-Prot
Pfam LID UniProtKB/Swiss-Prot
  LIM_bind UniProtKB/Swiss-Prot
PharmGKB PA30317 PharmGKB
PROSITE LID UniProtKB/Swiss-Prot
UniProt B7Z6D0 ENTREZGENE, UniProtKB/TrEMBL
  D6RAT1_HUMAN UniProtKB/TrEMBL
  E7EX95_HUMAN UniProtKB/TrEMBL
  E9PFI4 ENTREZGENE, UniProtKB/TrEMBL
  E9PGU0_HUMAN UniProtKB/TrEMBL
  G5E9Y7 ENTREZGENE, UniProtKB/TrEMBL
  H0YA09 ENTREZGENE, UniProtKB/TrEMBL
  LDB2_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
  O60619 ENTREZGENE
  O75480 ENTREZGENE
  Q4W5E7_HUMAN UniProtKB/TrEMBL
UniProt Secondary O60619 UniProtKB/Swiss-Prot
  O75480 UniProtKB/Swiss-Prot
1 to 36 of 36 rows