LDB2 (LIM domain binding 2) - Rat Genome Database

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Gene: LDB2 (LIM domain binding 2) Homo sapiens
Analyze
Symbol: LDB2
Name: LIM domain binding 2
RGD ID: 1317395
HGNC Page HGNC:6533
Description: Predicted to enable LIM domain binding activity. Predicted to be involved in several processes, including regulation of cell migration; regulation of kinase activity; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including epithelial structure maintenance; hair follicle development; and somatic stem cell population maintenance. Located in nucleolus; nucleoplasm; and plasma membrane.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: carboxyl-terminal LIM domain-binding protein 1; CLIM-1; CLIM1; LDB-2; LDB1; LIM binding domain 2; LIM domain-binding factor CLIM1; LIM domain-binding factor-2; LIM domain-binding protein 2
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38416,501,541 - 16,898,645 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl416,501,541 - 16,898,678 (-)EnsemblGRCh38hg38GRCh38
GRCh37416,503,164 - 16,900,268 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36416,112,262 - 16,509,425 (-)NCBINCBI36Build 36hg18NCBI36
Build 34416,179,434 - 16,576,596NCBI
Celera416,968,377 - 17,365,469 (-)NCBICelera
Cytogenetic Map4p15.32NCBI
HuRef415,852,373 - 16,253,922 (-)NCBIHuRef
CHM1_1416,501,239 - 16,898,326 (-)NCBICHM1_1
T2T-CHM13v2.0416,483,292 - 16,880,253 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8125298   PMID:8918878   PMID:9192866   PMID:9799849   PMID:9853615   PMID:9880598   PMID:10083735   PMID:10431247   PMID:11882901   PMID:12477932   PMID:14702039   PMID:15231748  
PMID:15489334   PMID:16344560   PMID:18330356   PMID:19997623   PMID:20211142   PMID:20379614   PMID:21873635   PMID:23534349   PMID:23585552   PMID:24925974   PMID:25609649   PMID:28946938  
PMID:32296183   PMID:33656268   PMID:33849822   PMID:35914814   PMID:36473369  


Genomics

Comparative Map Data
LDB2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38416,501,541 - 16,898,645 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl416,501,541 - 16,898,678 (-)EnsemblGRCh38hg38GRCh38
GRCh37416,503,164 - 16,900,268 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36416,112,262 - 16,509,425 (-)NCBINCBI36Build 36hg18NCBI36
Build 34416,179,434 - 16,576,596NCBI
Celera416,968,377 - 17,365,469 (-)NCBICelera
Cytogenetic Map4p15.32NCBI
HuRef415,852,373 - 16,253,922 (-)NCBIHuRef
CHM1_1416,501,239 - 16,898,326 (-)NCBICHM1_1
T2T-CHM13v2.0416,483,292 - 16,880,253 (-)NCBIT2T-CHM13v2.0
Ldb2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39544,593,292 - 44,957,466 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl544,629,474 - 44,957,022 (-)EnsemblGRCm39 Ensembl
GRCm38544,435,955 - 44,799,759 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl544,472,132 - 44,799,680 (-)EnsemblGRCm38mm10GRCm38
MGSCv37544,863,372 - 45,190,946 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36544,760,963 - 45,087,867 (-)NCBIMGSCv36mm8
Celera541,894,726 - 42,234,169 (-)NCBICelera
Cytogenetic Map5B3NCBI
cM Map524.24NCBI
Ldb2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81470,489,243 - 70,810,573 (+)NCBIGRCr8
mRatBN7.21466,277,044 - 66,598,071 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1466,277,085 - 66,597,778 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1470,673,511 - 70,993,888 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01471,957,095 - 72,277,709 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01468,383,948 - 68,704,320 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01470,780,605 - 71,112,857 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1470,780,623 - 71,112,552 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01470,817,435 - 70,817,796 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01470,920,028 - 71,144,813 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41471,374,621 - 71,695,965 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11471,377,028 - 71,698,910 (+)NCBI
Celera1465,250,557 - 65,570,430 (+)NCBICelera
Cytogenetic Map14q21NCBI
Ldb2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554807,199,933 - 7,568,629 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554807,200,111 - 7,568,567 (+)NCBIChiLan1.0ChiLan1.0
LDB2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2316,771,454 - 17,168,732 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1416,969,178 - 17,366,385 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0410,930,160 - 11,327,367 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1416,226,042 - 16,621,851 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl416,227,146 - 16,622,167 (-)Ensemblpanpan1.1panPan2
LDB2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1363,508,721 - 63,883,842 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl363,508,247 - 63,883,717 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha366,026,288 - 66,401,935 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0363,985,593 - 64,361,307 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl363,985,615 - 64,362,099 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1363,476,565 - 63,852,008 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0363,680,390 - 64,055,540 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0364,040,117 - 64,415,250 (+)NCBIUU_Cfam_GSD_1.0
Ldb2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528557,497,602 - 57,837,007 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647711,199,003 - 11,538,728 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647711,199,200 - 11,538,699 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LDB2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl811,641,064 - 12,037,265 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1811,641,060 - 12,037,388 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2811,335,352 - 11,566,827 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LDB2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12733,303,801 - 33,698,460 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604780,035,660 - 80,430,270 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ldb2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475514,962,317 - 15,359,814 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475514,962,538 - 15,358,771 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in LDB2
30 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 4p16.3-15.1(chr4:72555-28066309)x1 copy number loss See cases [RCV000051642] Chr4:72555..28066309 [GRCh38]
Chr4:72447..28067931 [GRCh37]
Chr4:62447..27677029 [NCBI36]
Chr4:4p16.3-15.1		 pathogenic
GRCh38/hg38 4p15.33-15.31(chr4:14061129-20121834)x1 copy number loss See cases [RCV000051220] Chr4:14061129..20121834 [GRCh38]
Chr4:14062753..20123457 [GRCh37]
Chr4:13671851..19732555 [NCBI36]
Chr4:4p15.33-15.31		 pathogenic
GRCh38/hg38 4p16.3-15.2(chr4:51519-26519788)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051752]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051752]|See cases [RCV000051752] Chr4:51519..26519788 [GRCh38]
Chr4:51413..26521410 [GRCh37]
Chr4:41413..26130508 [NCBI36]
Chr4:4p16.3-15.2		 pathogenic
GRCh38/hg38 4p16.3-15.1(chr4:72555-33130620)x3 copy number gain See cases [RCV000051753] Chr4:72555..33130620 [GRCh38]
Chr4:72447..33132242 [GRCh37]
Chr4:62447..32808637 [NCBI36]
Chr4:4p16.3-15.1		 pathogenic
GRCh38/hg38 4p16.3-14(chr4:85149-38700366)x3 copy number gain See cases [RCV000051757] Chr4:85149..38700366 [GRCh38]
Chr4:85040..38701987 [GRCh37]
Chr4:75040..38378382 [NCBI36]
Chr4:4p16.3-14		 pathogenic
GRCh38/hg38 4p15.33-15.31(chr4:14659764-18274924)x3 copy number gain See cases [RCV000051769] Chr4:14659764..18274924 [GRCh38]
Chr4:14661388..18276547 [GRCh37]
Chr4:14270486..17885645 [NCBI36]
Chr4:4p15.33-15.31		 pathogenic
GRCh38/hg38 4p16.3-15.2(chr4:85149-22450018)x3 copy number gain See cases [RCV000051755] Chr4:85149..22450018 [GRCh38]
Chr4:85040..22451641 [GRCh37]
Chr4:75040..22060739 [NCBI36]
Chr4:4p16.3-15.2		 pathogenic
GRCh38/hg38 4p16.3-15.32(chr4:85149-17486742)x1 copy number loss See cases [RCV000051679] Chr4:85149..17486742 [GRCh38]
Chr4:85040..17488365 [GRCh37]
Chr4:75040..17097463 [NCBI36]
Chr4:4p16.3-15.32		 pathogenic
NM_001130834.2(LDB2):c.615+29471T>G single nucleotide variant Lung cancer [RCV000094285] Chr4:16556451 [GRCh38]
Chr4:16558074 [GRCh37]
Chr4:4p15.32		 uncertain significance
NM_001130834.2(LDB2):c.236-7334A>G single nucleotide variant Lung cancer [RCV000094288] Chr4:16603209 [GRCh38]
Chr4:16604832 [GRCh37]
Chr4:4p15.32		 uncertain significance
NM_001130834.2(LDB2):c.132+25534A>T single nucleotide variant Lung cancer [RCV000094301] Chr4:16872820 [GRCh38]
Chr4:16874443 [GRCh37]
Chr4:4p15.32		 uncertain significance
GRCh37/hg19 4p15.32-15.31(chr4:16830399-17805183)x3 copy number gain See cases [RCV000184072] Chr4:16830399..17805183 [GRCh37]
Chr4:4p15.32-15.31		 uncertain significance
GRCh38/hg38 4p16.3-14(chr4:72555-39477144)x3 copy number gain See cases [RCV000133677] Chr4:72555..39477144 [GRCh38]
Chr4:72447..39478764 [GRCh37]
Chr4:62447..39155159 [NCBI36]
Chr4:4p16.3-14		 pathogenic
GRCh38/hg38 4p16.3-15.32(chr4:72555-17278013)x1 copy number loss See cases [RCV000135657] Chr4:72555..17278013 [GRCh38]
Chr4:72447..17279636 [GRCh37]
Chr4:62447..16888734 [NCBI36]
Chr4:4p16.3-15.32		 pathogenic
GRCh38/hg38 4p16.3-15.31(chr4:51519-17798196)x3 copy number gain See cases [RCV000137071] Chr4:51519..17798196 [GRCh38]
Chr4:51413..17799819 [GRCh37]
Chr4:41413..17408917 [NCBI36]
Chr4:4p16.3-15.31		 pathogenic
GRCh38/hg38 4p16.3-12(chr4:36424-47491595)x3 copy number gain See cases [RCV000137261] Chr4:36424..47491595 [GRCh38]
Chr4:36424..47493612 [GRCh37]
Chr4:26424..47188369 [NCBI36]
Chr4:4p16.3-12		 pathogenic
GRCh38/hg38 4p16.3-15.31(chr4:72555-21022414)x3 copy number gain See cases [RCV000138305] Chr4:72555..21022414 [GRCh38]
Chr4:72447..21024037 [GRCh37]
Chr4:62447..20633135 [NCBI36]
Chr4:4p16.3-15.31		 pathogenic
GRCh38/hg38 4p15.32(chr4:15868863-16925081)x1 copy number loss See cases [RCV000140878] Chr4:15868863..16925081 [GRCh38]
Chr4:15870486..16926704 [GRCh37]
Chr4:15479584..16535802 [NCBI36]
Chr4:4p15.32		 uncertain significance
GRCh38/hg38 4p16.3-15.32(chr4:4426403-17460549)x1 copy number loss See cases [RCV000141502] Chr4:4426403..17460549 [GRCh38]
Chr4:4428130..17462172 [GRCh37]
Chr4:4479031..17071270 [NCBI36]
Chr4:4p16.3-15.32		 pathogenic
GRCh38/hg38 4p16.3-15.31(chr4:68453-20385608)x1 copy number loss See cases [RCV000143713] Chr4:68453..20385608 [GRCh38]
Chr4:68345..20387231 [GRCh37]
Chr4:58345..19996329 [NCBI36]
Chr4:4p16.3-15.31		 pathogenic
GRCh37/hg19 4p16.3-15.31(chr4:44020-19796182)x1 copy number loss See cases [RCV000203431] Chr4:44020..19796182 [GRCh37]
Chr4:4p16.3-15.31		 pathogenic
GRCh37/hg19 4p16.3-15.1(chr4:71552-29006745)x1 copy number loss See cases [RCV000240003] Chr4:71552..29006745 [GRCh37]
Chr4:4p16.3-15.1		 pathogenic
GRCh37/hg19 4p16.1-15.31(chr4:6447048-20490737)x3 copy number gain See cases [RCV000240007] Chr4:6447048..20490737 [GRCh37]
Chr4:4p16.1-15.31		 pathogenic
GRCh37/hg19 4p16.3-11(chr4:12440-49064044)x3 copy number gain See cases [RCV000240562] Chr4:12440..49064044 [GRCh37]
Chr4:4p16.3-11		 pathogenic
GRCh37/hg19 4p16.3-11(chr4:68345-49089361)x3 copy number gain not specified [RCV003986479] Chr4:68345..49089361 [GRCh37]
Chr4:4p16.3-11		 pathogenic
GRCh37/hg19 4p15.32-15.31(chr4:16834640-17818885)x3 copy number gain See cases [RCV000599152] Chr4:16834640..17818885 [GRCh37]
Chr4:4p15.32-15.31		 uncertain significance
GRCh37/hg19 4p16.3-15.31(chr4:68345-20533787)x1 copy number loss See cases [RCV000449197] Chr4:68345..20533787 [GRCh37]
Chr4:4p16.3-15.31		 pathogenic
GRCh37/hg19 4p16.3-q35.2(chr4:12440-190904441)x3 copy number gain See cases [RCV000446653] Chr4:12440..190904441 [GRCh37]
Chr4:4p16.3-q35.2		 pathogenic
GRCh37/hg19 4p16.3-11(chr4:68345-49093788)x3 copy number gain See cases [RCV000446451] Chr4:68345..49093788 [GRCh37]
Chr4:4p16.3-11		 pathogenic
GRCh37/hg19 4p15.32-15.31(chr4:16826659-17818949)x3 copy number gain See cases [RCV000448351] Chr4:16826659..17818949 [GRCh37]
Chr4:4p15.32-15.31		 uncertain significance
GRCh37/hg19 4p16.3-q35.2(chr4:68346-190957473) copy number gain See cases [RCV000510453] Chr4:68346..190957473 [GRCh37]
Chr4:4p16.3-q35.2		 pathogenic
GRCh37/hg19 4p15.32(chr4:15974221-16897124)x3 copy number gain See cases [RCV000510880] Chr4:15974221..16897124 [GRCh37]
Chr4:4p15.32		 uncertain significance
GRCh37/hg19 4p15.32(chr4:15836236-16942209)x3 copy number gain See cases [RCV000510810] Chr4:15836236..16942209 [GRCh37]
Chr4:4p15.32		 uncertain significance
GRCh37/hg19 4p16.3-q13.1(chr4:68345-66440622)x3 copy number gain See cases [RCV000511193] Chr4:68345..66440622 [GRCh37]
Chr4:4p16.3-q13.1		 pathogenic
GRCh37/hg19 4p16.3-q35.2(chr4:68346-190957473)x3 copy number gain See cases [RCV000512241] Chr4:68346..190957473 [GRCh37]
Chr4:4p16.3-q35.2		 pathogenic
GRCh37/hg19 4p16.3-11(chr4:68345-49089361)x3 copy number gain not provided [RCV000682363] Chr4:68345..49089361 [GRCh37]
Chr4:4p16.3-11		 pathogenic
GRCh37/hg19 4p16.3-15.1(chr4:4165334-33324781)x1 copy number loss not provided [RCV000682373] Chr4:4165334..33324781 [GRCh37]
Chr4:4p16.3-15.1		 pathogenic
GRCh37/hg19 4p15.32(chr4:16518224-16575820)x1 copy number loss not provided [RCV000682389] Chr4:16518224..16575820 [GRCh37]
Chr4:4p15.32		 likely benign
GRCh37/hg19 4p16.3-q35.2(chr4:49450-190915650)x3 copy number gain not provided [RCV000743155] Chr4:49450..190915650 [GRCh37]
Chr4:4p16.3-q35.2		 pathogenic
GRCh37/hg19 4p15.32-15.31(chr4:16822918-17818885)x3 copy number gain not provided [RCV000743429] Chr4:16822918..17818885 [GRCh37]
Chr4:4p15.32-15.31		 benign
GRCh37/hg19 4p15.32-15.31(chr4:16825299-17809538)x3 copy number gain not provided [RCV000743430] Chr4:16825299..17809538 [GRCh37]
Chr4:4p15.32-15.31		 benign
GRCh37/hg19 4p16.3-q35.2(chr4:49450-190963766)x3 copy number gain not provided [RCV000743156] Chr4:49450..190963766 [GRCh37]
Chr4:4p16.3-q35.2		 pathogenic
GRCh37/hg19 4p16.3-q35.2(chr4:11525-191028879)x3 copy number gain not provided [RCV000743147] Chr4:11525..191028879 [GRCh37]
Chr4:4p16.3-q35.2		 pathogenic
GRCh37/hg19 4p16.3-11(chr4:1356924-49659859)x3 copy number gain not provided [RCV000743201] Chr4:1356924..49659859 [GRCh37]
Chr4:4p16.3-11		 pathogenic
GRCh37/hg19 4p16.3-12(chr4:49450-46339070)x3 copy number gain not provided [RCV000743154] Chr4:49450..46339070 [GRCh37]
Chr4:4p16.3-12		 pathogenic
NM_001290.5(LDB2):c.1001T>G (p.Met334Arg) single nucleotide variant not specified [RCV004286491] Chr4:16502764 [GRCh38]
Chr4:16504387 [GRCh37]
Chr4:4p15.32		 uncertain significance
NM_001290.5(LDB2):c.204A>G (p.Ser68=) single nucleotide variant not provided [RCV000965670] Chr4:16759189 [GRCh38]
Chr4:16760812 [GRCh37]
Chr4:4p15.32		 benign
GRCh37/hg19 4p15.33-15.1(chr4:12778849-27760141) copy number loss not provided [RCV000767707] Chr4:12778849..27760141 [GRCh37]
Chr4:4p15.33-15.1		 pathogenic
GRCh37/hg19 4p16.2-15.32(chr4:5914109-17264668)x1 copy number loss not provided [RCV001005519] Chr4:5914109..17264668 [GRCh37]
Chr4:4p16.2-15.32		 likely pathogenic
NC_000004.12:g.8398067_17505522inv inversion Dihydropteridine reductase deficiency [RCV000768549] Chr4:8398067..17505522 [GRCh38]
Chr4:4p16.1-15.32		 pathogenic
GRCh37/hg19 4p15.32-15.31(chr4:16826786-17818949)x3 copy number gain not provided [RCV001005526] Chr4:16826786..17818949 [GRCh37]
Chr4:4p15.32-15.31		 likely benign
GRCh37/hg19 4p15.33-15.2(chr4:13529798-22750583)x1 copy number loss not provided [RCV000998337] Chr4:13529798..22750583 [GRCh37]
Chr4:4p15.33-15.2		 uncertain significance
GRCh37/hg19 4p16.3-15.2(chr4:68345-27423424)x3 copy number gain not provided [RCV001005510] Chr4:68345..27423424 [GRCh37]
Chr4:4p16.3-15.2		 pathogenic
GRCh37/hg19 4p16.3-15.2(chr4:49450-24280482)x1 copy number loss See cases [RCV001007422] Chr4:49450..24280482 [GRCh37]
Chr4:4p16.3-15.2		 pathogenic
GRCh37/hg19 4p16.3-11(chr4:49450-49620898)x3 copy number gain See cases [RCV001194594] Chr4:49450..49620898 [GRCh37]
Chr4:4p16.3-11		 pathogenic
GRCh37/hg19 4p16.3-15.1(chr4:69671-29702595)x3 copy number gain not provided [RCV001537928] Chr4:69671..29702595 [GRCh37]
Chr4:4p16.3-15.1		 pathogenic
GRCh37/hg19 4p16.3-15.31(chr4:68598-18912995)x1 copy number loss not provided [RCV001537927] Chr4:68598..18912995 [GRCh37]
Chr4:4p16.3-15.31		 pathogenic
GRCh37/hg19 4p16.3-15.1(chr4:68345-34512694) copy number gain 4p16.3 microduplication syndrome [RCV003319592] Chr4:68345..34512694 [GRCh37]
Chr4:4p16.3-15.1		 pathogenic
GRCh37/hg19 4p15.32-15.31(chr4:16826659-17818949) copy number gain not specified [RCV002053408] Chr4:16826659..17818949 [GRCh37]
Chr4:4p15.32-15.31		 uncertain significance
GRCh37/hg19 4p16.3-15.31(chr4:68345-20587167)x1 copy number loss not provided [RCV001829146] Chr4:68345..20587167 [GRCh37]
Chr4:4p16.3-15.31		 pathogenic
GRCh37/hg19 4p16.3-11(chr4:68345-49089361)x3 copy number gain See cases [RCV002292704] Chr4:68345..49089361 [GRCh37]
Chr4:4p16.3-11		 pathogenic
GRCh37/hg19 4p16.3-15.31(chr4:68345-20964575)x1 copy number loss See cases [RCV002286359] Chr4:68345..20964575 [GRCh37]
Chr4:4p16.3-15.31		 pathogenic
GRCh37/hg19 4p16.3-12(chr4:114784-47569569)x3 copy number gain FETAL DEMISE [RCV002282978] Chr4:114784..47569569 [GRCh37]
Chr4:4p16.3-12		 pathogenic
GRCh37/hg19 4p15.32-15.2(chr4:16249194-24864955)x1 copy number loss not provided [RCV002474848] Chr4:16249194..24864955 [GRCh37]
Chr4:4p15.32-15.2		 uncertain significance
NM_001290.5(LDB2):c.290T>C (p.Val97Ala) single nucleotide variant not specified [RCV004107676] Chr4:16595821 [GRCh38]
Chr4:16597444 [GRCh37]
Chr4:4p15.32		 uncertain significance
NM_001290.5(LDB2):c.622G>A (p.Val208Ile) single nucleotide variant not specified [RCV004116449] Chr4:16512098 [GRCh38]
Chr4:16513721 [GRCh37]
Chr4:4p15.32		 uncertain significance
NM_001290.5(LDB2):c.397A>G (p.Met133Val) single nucleotide variant not specified [RCV004173589] Chr4:16595714 [GRCh38]
Chr4:16597337 [GRCh37]
Chr4:4p15.32		 uncertain significance
NM_001290.5(LDB2):c.730G>T (p.Ala244Ser) single nucleotide variant not specified [RCV004079525] Chr4:16511990 [GRCh38]
Chr4:16513613 [GRCh37]
Chr4:4p15.32		 uncertain significance
NM_001290.5(LDB2):c.989C>A (p.Ala330Glu) single nucleotide variant not specified [RCV004177286] Chr4:16502776 [GRCh38]
Chr4:16504399 [GRCh37]
Chr4:4p15.32		 uncertain significance
GRCh38/hg38 4p15.33-14(chr4:11399082-38137335) copy number loss 4p partial monosomy syndrome [RCV003155905] Chr4:11399082..38137335 [GRCh38]
Chr4:4p15.33-14		 pathogenic
GRCh38/hg38 4p16.3-13(chr4:2904667-42963232)x3 copy number gain Neurodevelopmental disorder [RCV003327612] Chr4:2904667..42963232 [GRCh38]
Chr4:4p16.3-13		 pathogenic
GRCh38/hg38 4p16.3-q12(chr4:85624-57073230)x3 copy number gain Neurodevelopmental disorder [RCV003327613] Chr4:85624..57073230 [GRCh38]
Chr4:4p16.3-q12		 pathogenic
GRCh37/hg19 4p16.3-15.32(chr4:85622-16900108)x1 copy number loss not provided [RCV003334269] Chr4:85622..16900108 [GRCh37]
Chr4:4p16.3-15.32		 pathogenic
GRCh37/hg19 4p15.33-15.2(chr4:12238766-23083496)x1 copy number loss not provided [RCV003485415] Chr4:12238766..23083496 [GRCh37]
Chr4:4p15.33-15.2		 likely pathogenic
GRCh37/hg19 4p16.3-15.31(chr4:68345-19103550)x1 copy number loss not specified [RCV003986512] Chr4:68345..19103550 [GRCh37]
Chr4:4p16.3-15.31		 pathogenic
GRCh37/hg19 4p16.3-15.31(chr4:68345-21143236)x1 copy number loss not specified [RCV003986488] Chr4:68345..21143236 [GRCh37]
Chr4:4p16.3-15.31		 pathogenic
NM_001290.5(LDB2):c.286G>T (p.Gly96Trp) single nucleotide variant EBV-positive nodal T- and NK-cell lymphoma [RCV004557773] Chr4:16595825 [GRCh38]
Chr4:16597448 [GRCh37]
Chr4:4p15.32		 likely benign
NM_001290.5(LDB2):c.1006G>A (p.Asp336Asn) single nucleotide variant not specified [RCV004412591] Chr4:16502759 [GRCh38]
Chr4:16504382 [GRCh37]
Chr4:4p15.32		 uncertain significance
NM_001290.5(LDB2):c.470C>T (p.Thr157Ile) single nucleotide variant not specified [RCV004412592] Chr4:16588771 [GRCh38]
Chr4:16590394 [GRCh37]
Chr4:4p15.32		 uncertain significance
NM_001290.5(LDB2):c.73A>G (p.Met25Val) single nucleotide variant not specified [RCV004412593] Chr4:16898413 [GRCh38]
Chr4:16900036 [GRCh37]
Chr4:4p15.32		 uncertain significance
NM_001290.5(LDB2):c.757C>G (p.Pro253Ala) single nucleotide variant not specified [RCV004642244] Chr4:16508669 [GRCh38]
Chr4:16510292 [GRCh37]
Chr4:4p15.32		 uncertain significance
GRCh38/hg38 4p16.3-11(chr4:1-49062177)x3 copy number gain Neurodevelopmental disorder [RCV003327611] Chr4:1..49062177 [GRCh38]
Chr4:4p16.3-11		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4773
Count of miRNA genes:976
Interacting mature miRNAs:1182
Transcripts:ENST00000304523, ENST00000441778, ENST00000502640, ENST00000503153, ENST00000503178, ENST00000503829, ENST00000504189, ENST00000504886, ENST00000506732, ENST00000507464, ENST00000508804, ENST00000508918, ENST00000509803, ENST00000510825, ENST00000512345, ENST00000513457, ENST00000515064
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407307845GWAS956821_Hfat body mass QTL GWAS956821 (human)5e-09body fat mass (VT:0010482)total body fat mass (CMO:0000305)41686013216860133Human
406994823GWAS643799_Hprotein measurement QTL GWAS643799 (human)6e-09protein measurement41654552116545522Human
407192975GWAS841951_Hbody mass index QTL GWAS841951 (human)3e-08body mass indexbody mass index (BMI) (CMO:0000105)41660355516603556Human
407336205GWAS985181_Hinsomnia QTL GWAS985181 (human)4e-08insomnia41672599416725995Human
406944202GWAS593178_Hbody mass index QTL GWAS593178 (human)5e-09body mass indexbody mass index (BMI) (CMO:0000105)41659904116599042Human
407336204GWAS985180_Hinsomnia QTL GWAS985180 (human)2e-10insomnia41672516316725164Human
407062024GWAS711000_Hliver fibrosis measurement QTL GWAS711000 (human)0.000002liver integrity trait (VT:0010547)liver fibrotic lesion measurement (CMO:0001088)41684228716842288Human
407295883GWAS944859_Hbody mass index QTL GWAS944859 (human)5e-09body mass indexbody mass index (BMI) (CMO:0000105)41661464616614647Human
407103441GWAS752417_Hprotein measurement QTL GWAS752417 (human)4e-09protein measurement41654552116545522Human
407105621GWAS754597_Hprotein measurement QTL GWAS754597 (human)1e-09protein measurement41654552116545522Human
407058648GWAS707624_Hsystemic lupus erythematosus QTL GWAS707624 (human)2e-08systemic lupus erythematosus41651659216516593Human
407064671GWAS713647_Hprotein measurement QTL GWAS713647 (human)7e-09protein measurement41654552116545522Human
406964124GWAS613100_HCOVID-19 QTL GWAS613100 (human)0.000001COVID-1941666438416664385Human
407299544GWAS948520_Hmortality QTL GWAS948520 (human)0.000001mortalityratio of deaths to total study population during a period of time (CMO:0001023)41658505116585052Human
407039586GWAS688562_Hbody mass index QTL GWAS688562 (human)9e-09body mass indexbody mass index (BMI) (CMO:0000105)41686013216860133Human
407055522GWAS704498_Hglucocorticoid receptor gene expression measurement QTL GWAS704498 (human)0.00001glucocorticoid receptor gene expression measurement41664662316646624Human
407232484GWAS881460_Hbody height QTL GWAS881460 (human)2e-11body height (VT:0001253)body height (CMO:0000106)41682529916825300Human
407039587GWAS688563_Hbody mass index QTL GWAS688563 (human)1e-08body mass indexbody mass index (BMI) (CMO:0000105)41689040616890407Human
407099809GWAS748785_Hprotein measurement QTL GWAS748785 (human)2e-08protein measurement41654552116545522Human
406920163GWAS569139_Hrisky sexual behaviour measurement QTL GWAS569139 (human)1e-08risky sexual behaviour measurement41683018916830190Human
407232487GWAS881463_Hbody height QTL GWAS881463 (human)7e-15body height (VT:0001253)body height (CMO:0000106)41685741916857420Human
407039585GWAS688561_Hbody mass index QTL GWAS688561 (human)1e-09body mass indexbody mass index (BMI) (CMO:0000105)41659904116599042Human
406955813GWAS604789_Hsmoking initiation QTL GWAS604789 (human)1e-12smoking initiation41681997916819980Human
407326690GWAS975666_Hdiet measurement QTL GWAS975666 (human)2e-09diet measurementfood intake measurement (CMO:0000772)41689231616892321Human
407232483GWAS881459_Hbody height QTL GWAS881459 (human)1e-13body height (VT:0001253)body height (CMO:0000106)41659761116597612Human
407035179GWAS684155_Hprotein measurement QTL GWAS684155 (human)1e-08protein measurement41654552116545522Human
406898986GWAS547962_Hwaist circumference QTL GWAS547962 (human)0.000005waist circumferencewaist circumference (CMO:0000242)41682612616826127Human
406895852GWAS544828_HQT interval QTL GWAS544828 (human)0.000007QT intervalQT interval (CMO:0000235)41689227016892271Human
407107566GWAS756542_Hprotein measurement QTL GWAS756542 (human)2e-09protein measurement41654552116545522Human
407055342GWAS704318_Htrauma exposure measurement QTL GWAS704318 (human)0.000002trauma exposure measurement41672769416727695Human
407092909GWAS741885_Hbody mass index QTL GWAS741885 (human)7e-08body mass indexbody mass index (BMI) (CMO:0000105)41689154716891548Human
407249398GWAS898374_HAbdominal Aortic Aneurysm QTL GWAS898374 (human)3e-11Abdominal Aortic Aneurysm41688383216883833Human
407065138GWAS714114_Hprotein measurement QTL GWAS714114 (human)9e-11protein measurement41654552116545522Human
406987632GWAS636608_Hprotein measurement QTL GWAS636608 (human)7e-11protein measurement41654552116545522Human
407281140GWAS930116_Hvaginal microbiome measurement QTL GWAS930116 (human)0.0000002vaginal microbiome measurement41654995316549954Human
406962610GWAS611586_Hsevere acute respiratory syndrome, COVID-19 QTL GWAS611586 (human)0.0000003severe acute respiratory syndrome, COVID-1941652517116525172Human
407233593GWAS882569_Hbone density QTL GWAS882569 (human)2e-312bone mineral mass (VT:0005007)bone mineral density (CMO:0001226)41671660216716603Human
406896573GWAS545549_Hsmoking initiation QTL GWAS545549 (human)1e-10smoking initiation41684109316841094Human
407026300GWAS675276_Hrhegmatogenous retinal detachment QTL GWAS675276 (human)0.000005rhegmatogenous retinal detachment41651278516512786Human

Markers in Region
D4S1525  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37416,583,446 - 16,583,709UniSTSGRCh37
Build 36416,192,544 - 16,192,807RGDNCBI36
Celera417,048,518 - 17,048,807RGD
Cytogenetic Map4p16UniSTS
HuRef415,937,073 - 15,937,328UniSTS
Marshfield Genetic Map429.68UniSTS
Marshfield Genetic Map429.68RGD
deCODE Assembly Map431.19UniSTS
D4S590  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37416,814,138 - 16,814,479UniSTSGRCh37
Build 36416,423,236 - 16,423,577RGDNCBI36
Celera417,279,228 - 17,279,567RGD
Cytogenetic Map4p16UniSTS
HuRef416,167,514 - 16,167,853UniSTS
D4S599  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37416,814,095 - 16,814,472UniSTSGRCh37
Build 36416,423,193 - 16,423,570RGDNCBI36
Celera417,279,185 - 17,279,560RGD
Cytogenetic Map4p16UniSTS
HuRef416,167,471 - 16,167,846UniSTS
TNG Radiation Hybrid Map411008.0UniSTS
Stanford-G3 RH Map41058.0UniSTS
NCBI RH Map4158.3UniSTS
RH121731  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37416,516,016 - 16,516,357UniSTSGRCh37
Build 36416,125,114 - 16,125,455RGDNCBI36
Celera416,981,232 - 16,981,573RGD
Cytogenetic Map4p16UniSTS
HuRef415,865,227 - 15,865,568UniSTS
TNG Radiation Hybrid Map410843.0UniSTS
RH123952  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37416,677,143 - 16,677,428UniSTSGRCh37
Build 36416,286,241 - 16,286,526RGDNCBI36
Celera417,142,247 - 17,142,532RGD
Cytogenetic Map4p16UniSTS
HuRef416,030,643 - 16,030,928UniSTS
TNG Radiation Hybrid Map410929.0UniSTS
D4S731  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37416,858,872 - 16,859,035UniSTSGRCh37
Build 36416,467,970 - 16,468,133RGDNCBI36
Celera417,323,973 - 17,324,136RGD
Cytogenetic Map4p16UniSTS
HuRef416,212,366 - 16,212,529UniSTS
SHGC-149811  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37416,585,574 - 16,585,845UniSTSGRCh37
Build 36416,194,672 - 16,194,943RGDNCBI36
Celera417,050,672 - 17,050,943RGD
Cytogenetic Map4p16UniSTS
HuRef415,939,193 - 15,939,464UniSTS
TNG Radiation Hybrid Map410888.0UniSTS
GDB:3755021  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37416,833,425 - 16,833,507UniSTSGRCh37
Build 36416,442,523 - 16,442,605RGDNCBI36
Celera417,298,513 - 17,298,595RGD
Cytogenetic Map4p16UniSTS
HuRef416,186,905 - 16,186,987UniSTS
SHGC-67928  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37416,639,015 - 16,639,201UniSTSGRCh37
Build 36416,248,113 - 16,248,299RGDNCBI36
Celera417,104,114 - 17,104,300RGD
Cytogenetic Map4p16UniSTS
HuRef415,992,514 - 15,992,700UniSTS
TNG Radiation Hybrid Map410910.0UniSTS
GeneMap99-GB4 RH Map473.05UniSTS
SHGC-155343  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37416,744,199 - 16,744,524UniSTSGRCh37
Build 36416,353,297 - 16,353,622RGDNCBI36
Celera417,209,284 - 17,209,609RGD
Cytogenetic Map4p16UniSTS
HuRef416,097,726 - 16,098,051UniSTS
TNG Radiation Hybrid Map410947.0UniSTS
SHGC-156280  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37416,708,186 - 16,708,376UniSTSGRCh37
Build 36416,317,284 - 16,317,474RGDNCBI36
Celera417,173,277 - 17,173,467RGD
Cytogenetic Map4p16UniSTS
HuRef416,061,708 - 16,061,898UniSTS
TNG Radiation Hybrid Map410940.0UniSTS
LDB2_2122  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37416,502,976 - 16,503,823UniSTSGRCh37
Build 36416,112,074 - 16,112,921RGDNCBI36
Celera416,968,189 - 16,969,036RGD
HuRef415,852,185 - 15,853,032UniSTS
AB046090  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37416,547,668 - 16,547,810UniSTSGRCh37
Build 36416,156,766 - 16,156,908RGDNCBI36
Celera417,012,865 - 17,013,007RGD
HuRef415,897,254 - 15,897,396UniSTS
SHGC-59820  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37416,832,876 - 16,833,028UniSTSGRCh37
Build 36416,441,974 - 16,442,126RGDNCBI36
Celera417,297,964 - 17,298,116RGD
Cytogenetic Map4p16UniSTS
HuRef416,186,356 - 16,186,508UniSTS
GeneMap99-GB4 RH Map478.23UniSTS
G09887  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37416,718,723 - 16,718,903UniSTSGRCh37
Build 36416,327,821 - 16,328,001RGDNCBI36
Celera417,183,814 - 17,183,994RGD
Cytogenetic Map4p16UniSTS
HuRef416,072,249 - 16,072,429UniSTS
SHGC-50314  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37416,583,683 - 16,583,800UniSTSGRCh37
Build 36416,192,781 - 16,192,898RGDNCBI36
Celera417,048,781 - 17,048,898RGD
Cytogenetic Map4p16UniSTS
HuRef415,937,302 - 15,937,419UniSTS
TNG Radiation Hybrid Map410891.0UniSTS
G34137  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37416,858,673 - 16,858,874UniSTSGRCh37
Build 36416,467,771 - 16,467,972RGDNCBI36
Celera417,323,774 - 17,323,975RGD
Cytogenetic Map4p16UniSTS
HuRef416,212,167 - 16,212,368UniSTS
D4S2642  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37416,519,395 - 16,519,636UniSTSGRCh37
Build 36416,128,493 - 16,128,734RGDNCBI36
Celera416,984,606 - 16,984,847RGD
Cytogenetic Map4p16UniSTS
HuRef415,868,601 - 15,868,838UniSTS
Marshfield Genetic Map429.68UniSTS
Whitehead-YAC Contig Map4 UniSTS
LDB2  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37416,510,167 - 16,510,306UniSTSGRCh37
Celera416,975,383 - 16,975,522UniSTS
HuRef415,859,379 - 15,859,518UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2340 2788 2232 4922 1711 2179 3 612 1441 451 2234 6680 5962 44 3720 1 805 1663 1461 168 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001130834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001304434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001304435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_130734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005248197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005248201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005248202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006713975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006713976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006713977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006713978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006713979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006713980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006713981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006713982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006713983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011513905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017008812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017008813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017008814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017008815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017008816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017008817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017008818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017008819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017008820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017008821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017008822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024454278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024454279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024454280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047416390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047416391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054351198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054351199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054351200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054351201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054351202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054351203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054351204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054351205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054351206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054351207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054351208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054351209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054351210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054351211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054351212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054351213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054351214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054351215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC005690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC097515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC104656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC105353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC106894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF047337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF052389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF064492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF064493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF068651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK095238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK097013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK226029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK294588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK300119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK312881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL832772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC034019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG704168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX089082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA166898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA521198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB352456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KT584466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000304523   ⟹   ENSP00000306772
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl416,501,541 - 16,898,645 (-)Ensembl
Ensembl Acc Id: ENST00000441778   ⟹   ENSP00000392089
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl416,501,541 - 16,898,594 (-)Ensembl
Ensembl Acc Id: ENST00000502640   ⟹   ENSP00000423963
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl416,501,546 - 16,898,634 (-)Ensembl
Ensembl Acc Id: ENST00000503153
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl416,512,005 - 16,653,819 (-)Ensembl
Ensembl Acc Id: ENST00000503829
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl416,585,976 - 16,626,993 (-)Ensembl
Ensembl Acc Id: ENST00000504189
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl416,750,850 - 16,898,378 (-)Ensembl
Ensembl Acc Id: ENST00000504886
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl416,585,950 - 16,726,502 (-)Ensembl
Ensembl Acc Id: ENST00000506732   ⟹   ENSP00000421767
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl416,585,972 - 16,898,660 (-)Ensembl
Ensembl Acc Id: ENST00000507464   ⟹   ENSP00000425754
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl416,502,042 - 16,595,875 (-)Ensembl
Ensembl Acc Id: ENST00000508804
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl416,588,709 - 16,759,375 (-)Ensembl
Ensembl Acc Id: ENST00000508918   ⟹   ENSP00000424770
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl416,502,794 - 16,898,634 (-)Ensembl
Ensembl Acc Id: ENST00000509803
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl416,501,544 - 16,507,227 (-)Ensembl
Ensembl Acc Id: ENST00000510825
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl416,741,455 - 16,898,678 (-)Ensembl
Ensembl Acc Id: ENST00000512345   ⟹   ENSP00000424676
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl416,511,985 - 16,898,621 (-)Ensembl
Ensembl Acc Id: ENST00000513457
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl416,588,710 - 16,826,560 (-)Ensembl
Ensembl Acc Id: ENST00000515064   ⟹   ENSP00000422552
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl416,501,541 - 16,898,562 (-)Ensembl
RefSeq Acc Id: NM_001130834   ⟹   NP_001124306
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,501,541 - 16,898,645 (-)NCBI
GRCh37416,503,164 - 16,900,424 (-)RGD
Celera416,968,377 - 17,365,469 (-)RGD
HuRef415,852,373 - 16,253,922 (-)RGD
CHM1_1416,501,232 - 16,898,334 (-)NCBI
T2T-CHM13v2.0416,483,292 - 16,880,253 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001290   ⟹   NP_001281
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,501,541 - 16,898,645 (-)NCBI
GRCh37416,503,164 - 16,900,424 (-)RGD
Build 36416,112,262 - 16,509,425 (-)NCBI Archive
Celera416,968,377 - 17,365,469 (-)RGD
HuRef415,852,373 - 16,253,922 (-)RGD
CHM1_1416,501,232 - 16,898,334 (-)NCBI
T2T-CHM13v2.0416,483,292 - 16,880,253 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001304434   ⟹   NP_001291363
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,501,541 - 16,898,645 (-)NCBI
CHM1_1416,501,232 - 16,898,334 (-)NCBI
T2T-CHM13v2.0416,483,292 - 16,880,253 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001304435   ⟹   NP_001291364
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,501,541 - 16,898,645 (-)NCBI
CHM1_1416,501,232 - 16,898,334 (-)NCBI
T2T-CHM13v2.0416,483,292 - 16,880,253 (-)NCBI
Sequence:
RefSeq Acc Id: NR_130734
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,750,850 - 16,898,645 (-)NCBI
CHM1_1416,750,540 - 16,898,334 (-)NCBI
T2T-CHM13v2.0416,732,654 - 16,880,253 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005248197   ⟹   XP_005248254
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,501,541 - 16,898,645 (-)NCBI
GRCh37416,503,164 - 16,900,424 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006713975   ⟹   XP_006714038
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,501,541 - 16,898,645 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006713976   ⟹   XP_006714039
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,501,541 - 16,898,645 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006713977   ⟹   XP_006714040
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,501,541 - 16,898,645 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006713982   ⟹   XP_006714045
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,501,541 - 16,898,645 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006713983   ⟹   XP_006714046
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,501,541 - 16,898,645 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017008812   ⟹   XP_016864301
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,501,541 - 16,898,645 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017008813   ⟹   XP_016864302
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,501,541 - 16,898,645 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017008815   ⟹   XP_016864304
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,501,541 - 16,898,645 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017008816   ⟹   XP_016864305
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,501,541 - 16,898,645 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017008818   ⟹   XP_016864307
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,501,541 - 16,778,923 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017008819   ⟹   XP_016864308
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,501,541 - 16,898,645 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017008820   ⟹   XP_016864309
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,501,541 - 16,898,645 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017008821   ⟹   XP_016864310
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,501,541 - 16,898,645 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024454278   ⟹   XP_024310046
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,501,541 - 16,898,645 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024454280   ⟹   XP_024310048
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,501,541 - 16,814,244 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047416390   ⟹   XP_047272346
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,501,541 - 16,752,431 (-)NCBI
RefSeq Acc Id: XM_047416391   ⟹   XP_047272347
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,501,541 - 16,778,911 (-)NCBI
RefSeq Acc Id: XM_054351198   ⟹   XP_054207173
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0416,483,292 - 16,880,253 (-)NCBI
RefSeq Acc Id: XM_054351199   ⟹   XP_054207174
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0416,483,292 - 16,880,253 (-)NCBI
RefSeq Acc Id: XM_054351200   ⟹   XP_054207175
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0416,483,292 - 16,880,253 (-)NCBI
RefSeq Acc Id: XM_054351201   ⟹   XP_054207176
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0416,483,292 - 16,880,253 (-)NCBI
RefSeq Acc Id: XM_054351202   ⟹   XP_054207177
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0416,483,292 - 16,880,253 (-)NCBI
RefSeq Acc Id: XM_054351203   ⟹   XP_054207178
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0416,483,292 - 16,880,253 (-)NCBI
RefSeq Acc Id: XM_054351204   ⟹   XP_054207179
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0416,483,292 - 16,880,253 (-)NCBI
RefSeq Acc Id: XM_054351205   ⟹   XP_054207180
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0416,483,292 - 16,880,253 (-)NCBI
RefSeq Acc Id: XM_054351206   ⟹   XP_054207181
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0416,483,292 - 16,880,253 (-)NCBI
RefSeq Acc Id: XM_054351207   ⟹   XP_054207182
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0416,483,292 - 16,880,253 (-)NCBI
RefSeq Acc Id: XM_054351208   ⟹   XP_054207183
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0416,483,292 - 16,880,253 (-)NCBI
RefSeq Acc Id: XM_054351209   ⟹   XP_054207184
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0416,483,292 - 16,760,696 (-)NCBI
RefSeq Acc Id: XM_054351210   ⟹   XP_054207185
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0416,483,292 - 16,880,253 (-)NCBI
RefSeq Acc Id: XM_054351211   ⟹   XP_054207186
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0416,483,292 - 16,880,253 (-)NCBI
RefSeq Acc Id: XM_054351212   ⟹   XP_054207187
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0416,483,292 - 16,880,253 (-)NCBI
RefSeq Acc Id: XM_054351213   ⟹   XP_054207188
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0416,483,292 - 16,734,227 (-)NCBI
RefSeq Acc Id: XM_054351214   ⟹   XP_054207189
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0416,483,292 - 16,760,684 (-)NCBI
RefSeq Acc Id: XM_054351215   ⟹   XP_054207190
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0416,483,292 - 16,797,564 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001124306 (Get FASTA)   NCBI Sequence Viewer  
  NP_001281 (Get FASTA)   NCBI Sequence Viewer  
  NP_001291363 (Get FASTA)   NCBI Sequence Viewer  
  NP_001291364 (Get FASTA)   NCBI Sequence Viewer  
  XP_005248254 (Get FASTA)   NCBI Sequence Viewer  
  XP_006714038 (Get FASTA)   NCBI Sequence Viewer  
  XP_006714039 (Get FASTA)   NCBI Sequence Viewer  
  XP_006714040 (Get FASTA)   NCBI Sequence Viewer  
  XP_006714045 (Get FASTA)   NCBI Sequence Viewer  
  XP_006714046 (Get FASTA)   NCBI Sequence Viewer  
  XP_016864301 (Get FASTA)   NCBI Sequence Viewer  
  XP_016864302 (Get FASTA)   NCBI Sequence Viewer  
  XP_016864304 (Get FASTA)   NCBI Sequence Viewer  
  XP_016864305 (Get FASTA)   NCBI Sequence Viewer  
  XP_016864307 (Get FASTA)   NCBI Sequence Viewer  
  XP_016864308 (Get FASTA)   NCBI Sequence Viewer  
  XP_016864309 (Get FASTA)   NCBI Sequence Viewer  
  XP_016864310 (Get FASTA)   NCBI Sequence Viewer  
  XP_024310046 (Get FASTA)   NCBI Sequence Viewer  
  XP_024310048 (Get FASTA)   NCBI Sequence Viewer  
  XP_047272346 (Get FASTA)   NCBI Sequence Viewer  
  XP_047272347 (Get FASTA)   NCBI Sequence Viewer  
  XP_054207173 (Get FASTA)   NCBI Sequence Viewer  
  XP_054207174 (Get FASTA)   NCBI Sequence Viewer  
  XP_054207175 (Get FASTA)   NCBI Sequence Viewer  
  XP_054207176 (Get FASTA)   NCBI Sequence Viewer  
  XP_054207177 (Get FASTA)   NCBI Sequence Viewer  
  XP_054207178 (Get FASTA)   NCBI Sequence Viewer  
  XP_054207179 (Get FASTA)   NCBI Sequence Viewer  
  XP_054207180 (Get FASTA)   NCBI Sequence Viewer  
  XP_054207181 (Get FASTA)   NCBI Sequence Viewer  
  XP_054207182 (Get FASTA)   NCBI Sequence Viewer  
  XP_054207183 (Get FASTA)   NCBI Sequence Viewer  
  XP_054207184 (Get FASTA)   NCBI Sequence Viewer  
  XP_054207185 (Get FASTA)   NCBI Sequence Viewer  
  XP_054207186 (Get FASTA)   NCBI Sequence Viewer  
  XP_054207187 (Get FASTA)   NCBI Sequence Viewer  
  XP_054207188 (Get FASTA)   NCBI Sequence Viewer  
  XP_054207189 (Get FASTA)   NCBI Sequence Viewer  
  XP_054207190 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC13274 (Get FASTA)   NCBI Sequence Viewer  
  AAC28342 (Get FASTA)   NCBI Sequence Viewer  
  AAC28343 (Get FASTA)   NCBI Sequence Viewer  
  AAC77817 (Get FASTA)   NCBI Sequence Viewer  
  AAC83552 (Get FASTA)   NCBI Sequence Viewer  
  AAH34019 (Get FASTA)   NCBI Sequence Viewer  
  AAY40912 (Get FASTA)   NCBI Sequence Viewer  
  BAH11819 (Get FASTA)   NCBI Sequence Viewer  
  BAH13216 (Get FASTA)   NCBI Sequence Viewer  
  EAW92765 (Get FASTA)   NCBI Sequence Viewer  
  EAW92766 (Get FASTA)   NCBI Sequence Viewer  
  EAW92767 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000306772
  ENSP00000306772.5
  ENSP00000392089
  ENSP00000392089.2
  ENSP00000421767.1
  ENSP00000422552
  ENSP00000422552.1
  ENSP00000423963
  ENSP00000423963.1
  ENSP00000424676.1
  ENSP00000424770.1
  ENSP00000425754
  ENSP00000425754.1
GenBank Protein O43679 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001281   ⟸   NM_001290
- Peptide Label: isoform a
- UniProtKB: O60619 (UniProtKB/Swiss-Prot),   O75480 (UniProtKB/Swiss-Prot),   O43679 (UniProtKB/Swiss-Prot),   B7Z6D0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001124306   ⟸   NM_001130834
- Peptide Label: isoform b
- UniProtKB: O43679 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_005248254   ⟸   XM_005248197
- Peptide Label: isoform X5
- UniProtKB: B7Z6D0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006714039   ⟸   XM_006713976
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006714040   ⟸   XM_006713977
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006714038   ⟸   XM_006713975
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006714045   ⟸   XM_006713982
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006714046   ⟸   XM_006713983
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: NP_001291363   ⟸   NM_001304434
- Peptide Label: isoform c
- UniProtKB: B7Z6D0 (UniProtKB/TrEMBL),   G5E9Y7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001291364   ⟸   NM_001304435
- Peptide Label: isoform d
- UniProtKB: E9PFI4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016864302   ⟸   XM_017008813
- Peptide Label: isoform X6
- UniProtKB: B7Z6D0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016864310   ⟸   XM_017008821
- Peptide Label: isoform X15
- Sequence:
RefSeq Acc Id: XP_016864308   ⟸   XM_017008819
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: XP_016864309   ⟸   XM_017008820
- Peptide Label: isoform X14
- Sequence:
RefSeq Acc Id: XP_016864305   ⟸   XM_017008816
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_016864304   ⟸   XM_017008815
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_016864301   ⟸   XM_017008812
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_016864307   ⟸   XM_017008818
- Peptide Label: isoform X12
- UniProtKB: B7Z6D0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_024310046   ⟸   XM_024454278
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_024310048   ⟸   XM_024454280
- Peptide Label: isoform X17
- UniProtKB: H0YA09 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000423963   ⟸   ENST00000502640
Ensembl Acc Id: ENSP00000421767   ⟸   ENST00000506732
Ensembl Acc Id: ENSP00000425754   ⟸   ENST00000507464
Ensembl Acc Id: ENSP00000424770   ⟸   ENST00000508918
Ensembl Acc Id: ENSP00000392089   ⟸   ENST00000441778
Ensembl Acc Id: ENSP00000424676   ⟸   ENST00000512345
Ensembl Acc Id: ENSP00000422552   ⟸   ENST00000515064
Ensembl Acc Id: ENSP00000306772   ⟸   ENST00000304523
RefSeq Acc Id: XP_047272347   ⟸   XM_047416391
- Peptide Label: isoform X17
RefSeq Acc Id: XP_047272346   ⟸   XM_047416390
- Peptide Label: isoform X16
RefSeq Acc Id: XP_054207178   ⟸   XM_054351203
- Peptide Label: isoform X6
RefSeq Acc Id: XP_054207187   ⟸   XM_054351212
- Peptide Label: isoform X15
RefSeq Acc Id: XP_054207177   ⟸   XM_054351202
- Peptide Label: isoform X5
RefSeq Acc Id: XP_054207185   ⟸   XM_054351210
- Peptide Label: isoform X13
RefSeq Acc Id: XP_054207186   ⟸   XM_054351211
- Peptide Label: isoform X14
RefSeq Acc Id: XP_054207183   ⟸   XM_054351208
- Peptide Label: isoform X11
RefSeq Acc Id: XP_054207176   ⟸   XM_054351201
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054207182   ⟸   XM_054351207
- Peptide Label: isoform X10
RefSeq Acc Id: XP_054207174   ⟸   XM_054351199
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054207180   ⟸   XM_054351205
- Peptide Label: isoform X8
RefSeq Acc Id: XP_054207175   ⟸   XM_054351200
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054207181   ⟸   XM_054351206
- Peptide Label: isoform X9
RefSeq Acc Id: XP_054207173   ⟸   XM_054351198
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054207179   ⟸   XM_054351204
- Peptide Label: isoform X7
RefSeq Acc Id: XP_054207190   ⟸   XM_054351215
- Peptide Label: isoform X17
RefSeq Acc Id: XP_054207184   ⟸   XM_054351209
- Peptide Label: isoform X12
RefSeq Acc Id: XP_054207189   ⟸   XM_054351214
- Peptide Label: isoform X17
RefSeq Acc Id: XP_054207188   ⟸   XM_054351213
- Peptide Label: isoform X16
Protein Domains
LIM interaction   LIM interaction domain (LID)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O43679-F1-model_v2 AlphaFold O43679 1-373 view protein structure

Promoters
RGD ID:6867088
Promoter ID:EPDNEW_H6709
Type:initiation region
Name:LDB2_1
Description:LIM domain binding 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H6710  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,898,634 - 16,898,694EPDNEW
RGD ID:6867090
Promoter ID:EPDNEW_H6710
Type:initiation region
Name:LDB2_2
Description:LIM domain binding 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H6709  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38416,898,779 - 16,898,839EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:6533 AgrOrtholog
COSMIC LDB2 COSMIC
Ensembl Genes ENSG00000169744 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000304523 ENTREZGENE
  ENST00000304523.10 UniProtKB/Swiss-Prot
  ENST00000441778 ENTREZGENE
  ENST00000441778.6 UniProtKB/Swiss-Prot
  ENST00000502640 ENTREZGENE
  ENST00000502640.5 UniProtKB/TrEMBL
  ENST00000506732.1 UniProtKB/TrEMBL
  ENST00000507464 ENTREZGENE
  ENST00000507464.5 UniProtKB/TrEMBL
  ENST00000508918.5 UniProtKB/TrEMBL
  ENST00000512345.5 UniProtKB/TrEMBL
  ENST00000515064 ENTREZGENE
  ENST00000515064.5 UniProtKB/TrEMBL
Gene3D-CATH Cysteine Rich Protein UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000169744 GTEx
HGNC ID HGNC:6533 ENTREZGENE
Human Proteome Map LDB2 Human Proteome Map
InterPro LID UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LIM-bd/SEUSS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:9079 UniProtKB/Swiss-Prot
NCBI Gene 9079 ENTREZGENE
OMIM 603450 OMIM
PANTHER PTHR10378 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10378:SF8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam LID UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LIM_bind UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA30317 PharmGKB
PROSITE LID UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B7Z6D0 ENTREZGENE, UniProtKB/TrEMBL
  D6RAT1_HUMAN UniProtKB/TrEMBL
  E7EX95_HUMAN UniProtKB/TrEMBL
  E9PFI4 ENTREZGENE, UniProtKB/TrEMBL
  E9PGU0_HUMAN UniProtKB/TrEMBL
  G5E9Y7 ENTREZGENE, UniProtKB/TrEMBL
  H0YA09 ENTREZGENE, UniProtKB/TrEMBL
  LDB2_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
  O60619 ENTREZGENE
  O75480 ENTREZGENE
  Q4W5E7_HUMAN UniProtKB/TrEMBL
UniProt Secondary O60619 UniProtKB/Swiss-Prot
  O75480 UniProtKB/Swiss-Prot