Ldb2 (LIM domain binding 2) - Rat Genome Database

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Gene: Ldb2 (LIM domain binding 2) Ictidomys tridecemlineatus
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Symbol: Ldb2
Name: LIM domain binding 2
RGD ID: 12662667
Description: ENCODES a protein that exhibits enzyme binding (inferred); LIM domain binding (inferred); INVOLVED IN cellular component biogenesis (ortholog); epithelial structure maintenance (ortholog); hair follicle development (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cell leading edge (inferred); nucleolus (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LIM domain binding 2, transcript variant X1; LIM domain binding 2, transcript variant X10; LIM domain binding 2, transcript variant X2; LIM domain binding 2, transcript variant X3; LIM domain binding 2, transcript variant X4; LIM domain binding 2, transcript variant X5; LIM domain binding 2, transcript variant X6; LIM domain binding 2, transcript variant X7; LIM domain binding 2, transcript variant X8; LIM domain binding 2, transcript variant X9; LIM domain-binding protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528557,497,602 - 57,837,007 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647711,199,003 - 11,538,728 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647711,199,200 - 11,538,699 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Ldb2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528557,497,602 - 57,837,007 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647711,199,003 - 11,538,728 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647711,199,200 - 11,538,699 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LDB2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38416,501,541 - 16,898,645 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl416,501,541 - 16,898,678 (-)EnsemblGRCh38hg38GRCh38
GRCh37416,503,164 - 16,900,268 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36416,112,262 - 16,509,425 (-)NCBINCBI36Build 36hg18NCBI36
Build 34416,179,434 - 16,576,596NCBI
Celera416,968,377 - 17,365,469 (-)NCBICelera
Cytogenetic Map4p15.32NCBI
HuRef415,852,373 - 16,253,922 (-)NCBIHuRef
CHM1_1416,501,239 - 16,898,326 (-)NCBICHM1_1
T2T-CHM13v2.0416,483,292 - 16,880,253 (-)NCBIT2T-CHM13v2.0
Ldb2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39544,593,292 - 44,957,466 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl544,629,474 - 44,957,022 (-)EnsemblGRCm39 Ensembl
GRCm38544,435,955 - 44,799,759 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl544,472,132 - 44,799,680 (-)EnsemblGRCm38mm10GRCm38
MGSCv37544,863,372 - 45,190,946 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36544,760,963 - 45,087,867 (-)NCBIMGSCv36mm8
Celera541,894,726 - 42,234,169 (-)NCBICelera
Cytogenetic Map5B3NCBI
cM Map524.24NCBI
Ldb2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81470,489,243 - 70,810,573 (+)NCBIGRCr8
mRatBN7.21466,277,044 - 66,598,071 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1466,277,085 - 66,597,778 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1470,673,511 - 70,993,888 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01471,957,095 - 72,277,709 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01468,383,948 - 68,704,320 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01470,780,605 - 71,112,857 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1470,780,623 - 71,112,552 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01470,817,435 - 70,817,796 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01470,920,028 - 71,144,813 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41471,374,621 - 71,695,965 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11471,377,028 - 71,698,910 (+)NCBI
Celera1465,250,557 - 65,570,430 (+)NCBICelera
Cytogenetic Map14q21NCBI
Ldb2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554807,199,933 - 7,568,629 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554807,200,111 - 7,568,567 (+)NCBIChiLan1.0ChiLan1.0
LDB2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2316,771,454 - 17,168,732 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1416,969,178 - 17,366,385 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0410,930,160 - 11,327,367 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1416,226,042 - 16,621,851 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl416,227,146 - 16,622,167 (-)Ensemblpanpan1.1panPan2
LDB2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1363,508,721 - 63,883,842 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl363,508,247 - 63,883,717 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha366,026,288 - 66,401,935 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0363,985,593 - 64,361,307 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl363,985,615 - 64,362,099 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1363,476,565 - 63,852,008 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0363,680,390 - 64,055,540 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0364,040,117 - 64,415,250 (+)NCBIUU_Cfam_GSD_1.0
LDB2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl811,641,064 - 12,037,265 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1811,641,060 - 12,037,388 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2811,335,352 - 11,566,827 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LDB2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12733,303,801 - 33,698,460 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604780,035,660 - 80,430,270 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ldb2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475514,962,317 - 15,359,814 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475514,962,538 - 15,358,771 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000002028   ⟹   ENSSTOP00000001807
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647711,199,003 - 11,538,728 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000022856   ⟹   ENSSTOP00000023362
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647711,199,003 - 11,538,728 (+)Ensembl
RefSeq Acc Id: XM_005318946   ⟹   XP_005319003
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528557,497,611 - 57,837,007 (+)NCBI
SpeTri2.0NW_00493647711,199,200 - 11,538,699 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005318947   ⟹   XP_005319004
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528557,497,609 - 57,837,007 (+)NCBI
SpeTri2.0NW_00493647711,199,325 - 11,538,699 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005318948   ⟹   XP_005319005
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528557,497,608 - 57,837,007 (+)NCBI
SpeTri2.0NW_00493647711,199,200 - 11,538,699 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005318949   ⟹   XP_005319006
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528557,497,603 - 57,837,007 (+)NCBI
SpeTri2.0NW_00493647711,199,200 - 11,538,699 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005318950   ⟹   XP_005319007
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528557,497,605 - 57,837,007 (+)NCBI
SpeTri2.0NW_00493647711,199,200 - 11,538,699 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021722070   ⟹   XP_021577745
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528557,497,603 - 57,835,537 (+)NCBI
SpeTri2.0NW_00493647711,199,322 - 11,537,366 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021722071   ⟹   XP_021577746
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528557,497,602 - 57,835,771 (+)NCBI
SpeTri2.0NW_00493647711,199,322 - 11,537,411 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021722072   ⟹   XP_021577747
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528557,497,603 - 57,835,771 (+)NCBI
SpeTri2.0NW_00493647711,199,322 - 11,537,411 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021722074   ⟹   XP_021577749
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528557,497,605 - 57,837,007 (+)NCBI
SpeTri2.0NW_00493647711,199,323 - 11,537,324 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040292605   ⟹   XP_040148539
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528557,497,607 - 57,837,007 (+)NCBI
RefSeq Acc Id: XP_005319003   ⟸   XM_005318946
- Peptide Label: isoform X1
- UniProtKB: I3NG65 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005319007   ⟸   XM_005318950
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_005319006   ⟸   XM_005318949
- Peptide Label: isoform X5
- UniProtKB: I3LZN2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005319005   ⟸   XM_005318948
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005319004   ⟸   XM_005318947
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_021577747   ⟸   XM_021722072
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_021577746   ⟸   XM_021722071
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_021577745   ⟸   XM_021722070
- Peptide Label: isoform X5
- UniProtKB: I3LZN2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021577749   ⟸   XM_021722074
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_040148539   ⟸   XM_040292605
- Peptide Label: isoform X4
RefSeq Acc Id: ENSSTOP00000023362   ⟸   ENSSTOT00000022856
RefSeq Acc Id: ENSSTOP00000001807   ⟸   ENSSTOT00000002028
Protein Domains
LIM interaction


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000002035 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000002028.3 UniProtKB/TrEMBL
  ENSSTOT00000022856.2 UniProtKB/TrEMBL
Gene3D-CATH Cysteine Rich Protein UniProtKB/TrEMBL
InterPro LID UniProtKB/TrEMBL
  LIM-bd/SEUSS UniProtKB/TrEMBL
NCBI Gene Ldb2 ENTREZGENE
PANTHER PTHR10378 UniProtKB/TrEMBL
  PTHR10378:SF8 UniProtKB/TrEMBL
Pfam LID UniProtKB/TrEMBL
  LIM_bind UniProtKB/TrEMBL
PROSITE LID UniProtKB/TrEMBL
UniProt I3LZN2 ENTREZGENE, UniProtKB/TrEMBL
  I3NG65 ENTREZGENE, UniProtKB/TrEMBL