Clptm1l (CLPTM1-like) - Rat Genome Database

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Gene: Clptm1l (CLPTM1-like) Mus musculus
Analyze
Symbol: Clptm1l
Name: CLPTM1-like
RGD ID: 1317357
MGI Page MGI
Description: Predicted to enable phospholipid scramblase activity. Predicted to be involved in apoptotic process and plasma membrane phospholipid scrambling. Predicted to be located in endoplasmic reticulum membrane. Predicted to be active in endomembrane system and membrane. Is expressed in embryo; retina; and white fat. Human ortholog(s) of this gene implicated in carcinoma (multiple) and lung disease (multiple). Orthologous to human CLPTM1L (CLPTM1 like).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: C130052I12Rik; cisplatin resistance related protein CRR9p; cisplatin resistance-related protein 9; cleft lip and palate transmembrane protein 1-like protein; CLPTM1-like protein; Crr9; CRR9p; lipid scramblase CLPTM1L; MGC36304
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391373,752,121 - 73,768,758 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1373,752,125 - 73,768,724 (+)EnsemblGRCm39 Ensembl
GRCm381373,604,002 - 73,620,639 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1373,604,006 - 73,620,605 (+)EnsemblGRCm38mm10GRCm38
MGSCv371373,741,749 - 73,758,053 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361374,070,303 - 74,086,607 (+)NCBIMGSCv36mm8
Celera1375,933,177 - 75,949,481 (+)NCBICelera
Cytogenetic Map13C1NCBI
cM Map1340.12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. A genetic sequence variant (GSV) at susceptibility loci of 5p15.33 (TERT-CLPTM1L) is associated with survival outcome in locally advanced and metastatic non-small-cell lung cancer (NSCLC). Azad AK, etal., Lung Cancer. 2014 Jun;84(3):289-94. doi: 10.1016/j.lungcan.2014.03.008. Epub 2014 Mar 13.
2. A GWAS Meta-analysis and Replication Study Identifies a Novel Locus within CLPTM1L/TERT Associated with Nasopharyngeal Carcinoma in Individuals of Chinese Ancestry. Bei JX, etal., Cancer Epidemiol Biomarkers Prev. 2016 Jan;25(1):188-92. doi: 10.1158/1055-9965.EPI-15-0144. Epub 2015 Nov 6.
3. The role of TERT-CLPTM1L SNPs, hTERT expression and telomere length in the pathogenesis of oral squamous cell carcinoma. Carkic J, etal., J Oral Sci. 2016;58(4):449-458. doi: 10.2334/josnusd.16-0108.
4. The associations of TERT-CLPTM1L variants and TERT mRNA expression with the prognosis of early stage non-small cell lung cancer. Chen Z, etal., Cancer Gene Ther. 2017 Jan;24(1):20-27. doi: 10.1038/cgt.2016.74. Epub 2016 Dec 16.
5. CRR9/CLPTM1L regulates cell survival signaling and is required for Ras transformation and lung tumorigenesis. James MA, etal., Cancer Res. 2014 Feb 15;74(4):1116-27. doi: 10.1158/0008-5472.CAN-13-1617. Epub 2013 Dec 23.
6. TERT-rs33963617 and CLPTM1L-rs77518573 reduce the risk of non-small cell lung cancer in Chinese population. Ji Z, etal., Gene. 2020 Mar 20;731:144357. doi: 10.1016/j.gene.2020.144357. Epub 2020 Jan 11.
7. Genetic variant rs401681 at 5p15.33 modifies susceptibility to lung cancer but not esophageal squamous cell carcinoma. Jiang M, etal., PLoS One. 2013 Dec 30;8(12):e84277. doi: 10.1371/journal.pone.0084277. eCollection 2013.
8. CLPTM1L polymorphism as a protective factor for lung cancer: a case-control study in southern Chinese population. Jin T, etal., Tumour Biol. 2016 Aug;37(8):10533-8. doi: 10.1007/s13277-016-4938-9. Epub 2016 Feb 6.
9. TERT-CLPTM1 locus polymorphism (rs401681) is associated with the prognosis of hepatocellular carcinoma. Lee HW, etal., Onco Targets Ther. 2017 Oct 3;10:4853-4858. doi: 10.2147/OTT.S138956. eCollection 2017.
10. Genetic variations in TERT-CLPTM1L genes and risk of lung cancer in Chinese women nonsmokers. Li C, etal., PLoS One. 2013 May 30;8(5):e64988. doi: 10.1371/journal.pone.0064988. Print 2013.
11. Evaluation of Rare and Common Variants from Suspected Familial or Sporadic Nasopharyngeal Carcinoma (NPC) Susceptibility Genes in Sporadic NPC. Liu Z, etal., Cancer Epidemiol Biomarkers Prev. 2019 Oct;28(10):1682-1686. doi: 10.1158/1055-9965.EPI-19-0007. Epub 2019 Jul 3.
12. Genetic variant in CLPTM1L confers reduced risk of lung cancer: a replication study in Chinese and a meta-analysis. Luo X, etal., Asian Pac J Cancer Prev. 2014;15(21):9241-7. doi: 10.7314/apjcp.2014.15.21.9241.
13. MGDs mouse GO annotations MGD data from the GO Consortium
14. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
15. Novel genetic variants in the chromosome 5p15.33 region associate with lung cancer risk. Pande M, etal., Carcinogenesis. 2011 Oct;32(10):1493-9. doi: 10.1093/carcin/bgr136. Epub 2011 Jul 18.
16. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
17. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
18. Polymorphisms of TERT and CLPTM1L and the risk of hepatocellular carcinoma in Chinese males. Su LY, etal., Asian Pac J Cancer Prev. 2014;15(19):8197-201. doi: 10.7314/apjcp.2014.15.19.8197.
19. No association of XRCC1 and CLPTM1L polymorphisms with non-small cell lung cancer in a non-smoking Han Chinese population. Sun Y, etal., Asian Pac J Cancer Prev. 2013;14(9):5171-4. doi: 10.7314/apjcp.2013.14.9.5171.
20. Role of 5p15.33 (TERT-CLPTM1L), 6p21.33 and 15q25.1 (CHRNA5-CHRNA3) variation and lung cancer risk in never-smokers. Wang Y, etal., Carcinogenesis. 2010 Feb;31(2):234-8. doi: 10.1093/carcin/bgp287. Epub 2009 Dec 2.
21. The TERT-CLPTM1L locus for lung cancer predisposes to bronchial obstruction and emphysema. Wauters E, etal., Eur Respir J. 2011 Oct;38(4):924-31. doi: 10.1183/09031936.00187110. Epub 2011 May 26.
22. CLPTM1L genetic polymorphisms and interaction with smoking and alcohol drinking in lung cancer risk: a case-control study in the Han population from northwest China. Xun X, etal., Medicine (Baltimore). 2014 Dec;93(28):e289. doi: 10.1097/MD.0000000000000289.
23. Association of TERT-CLPTM1L and 8q24 Common Genetic Variants with Gallbladder Cancer Susceptibility and Prognosis in North Indian Population. Yadav S, etal., Biochem Genet. 2018 Aug;56(4):267-282. doi: 10.1007/s10528-018-9843-z. Epub 2018 Feb 15.
24. TERT-CLPTM1L Rs401681 C>T polymorphism was associated with a decreased risk of esophageal cancer in a Chinese population. Yin J, etal., PLoS One. 2014 Jul 9;9(7):e100667. doi: 10.1371/journal.pone.0100667. eCollection 2014.
25. Polymorphisms of the TERT-CLPTM1L Gene Are Associated with Pharynx-Larynx Cancer. Yu J, etal., DNA Cell Biol. 2019 Sep;38(9):915-921. doi: 10.1089/dna.2019.4744. Epub 2019 Aug 20.
26. Upregulation of miR-494 Inhibits Cell Growth and Invasion and Induces Cell Apoptosis by Targeting Cleft Lip and Palate Transmembrane 1-Like in Esophageal Squamous Cell Carcinoma. Zhang R, etal., Dig Dis Sci. 2015 May;60(5):1247-55. doi: 10.1007/s10620-014-3433-7. Epub 2014 Dec 6.
27. Genetic polymorphisms of TERT and CLPTM1L and risk of lung cancer: a case-control study in northeast Chinese male population. Zhang Y, etal., Med Oncol. 2014 Jul;31(7):18. doi: 10.1007/s12032-014-0018-4. Epub 2014 May 27.
28. Common variations in TERT-CLPTM1L locus are reproducibly associated with the risk of nasopharyngeal carcinoma in Chinese populations. Zhang Y, etal., Oncotarget. 2016 Jan 5;7(1):759-70. doi: 10.18632/oncotarget.6397.
29. Genetic variations in TERT-CLPTM1L locus are associated with risk of lung cancer in Chinese population. Zhong R, etal., Mol Carcinog. 2013 Nov;52 Suppl 1:E118-26. doi: 10.1002/mc.22043. Epub 2013 Jun 12.
30. The identification of two regulatory ESCC susceptibility genetic variants in the TERT-CLPTM1L loci. Zhou L, etal., Oncotarget. 2016 Feb 2;7(5):5495-506. doi: 10.18632/oncotarget.6747.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12652657   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16602821  
PMID:21267068   PMID:21677750   PMID:21873635   PMID:23341629   PMID:30042348   PMID:38355793  


Genomics

Comparative Map Data
Clptm1l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391373,752,121 - 73,768,758 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1373,752,125 - 73,768,724 (+)EnsemblGRCm39 Ensembl
GRCm381373,604,002 - 73,620,639 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1373,604,006 - 73,620,605 (+)EnsemblGRCm38mm10GRCm38
MGSCv371373,741,749 - 73,758,053 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361374,070,303 - 74,086,607 (+)NCBIMGSCv36mm8
Celera1375,933,177 - 75,949,481 (+)NCBICelera
Cytogenetic Map13C1NCBI
cM Map1340.12NCBI
CLPTM1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3851,317,752 - 1,345,099 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl51,317,752 - 1,345,099 (-)EnsemblGRCh38hg38GRCh38
GRCh3751,317,867 - 1,345,214 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3651,370,999 - 1,398,002 (-)NCBINCBI36Build 36hg18NCBI36
Celera51,354,853 - 1,381,719 (-)NCBICelera
Cytogenetic Map5p15.33NCBI
HuRef51,298,289 - 1,325,657 (-)NCBIHuRef
CHM1_151,317,036 - 1,344,039 (-)NCBICHM1_1
T2T-CHM13v2.051,225,592 - 1,255,482 (-)NCBIT2T-CHM13v2.0
Clptm1l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8131,496,094 - 31,512,148 (-)NCBIGRCr8
mRatBN7.2129,667,545 - 29,683,530 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl129,667,545 - 29,683,530 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx129,468,681 - 29,484,664 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0135,468,526 - 35,484,509 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0129,669,309 - 29,685,293 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0132,281,207 - 32,297,196 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl132,281,207 - 32,297,190 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0133,706,075 - 33,722,058 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4130,474,672 - 30,490,655 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1130,477,611 - 30,493,598 (-)NCBI
Celera128,315,536 - 28,331,519 (-)NCBICelera
Cytogenetic Map1p11NCBI
Clptm1l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955504677,772 - 695,660 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955504677,824 - 695,660 (-)NCBIChiLan1.0ChiLan1.0
CLPTM1L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v241,582,050 - 1,610,975 (-)NCBINHGRI_mPanPan1-v2
PanPan1.1 Ensembl51,361,571 - 1,388,415 (-)Ensemblpanpan1.1panPan2
CLPTM1L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13411,263,274 - 11,277,666 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3411,263,162 - 11,277,436 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3415,773,118 - 15,787,519 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03411,163,710 - 11,178,126 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3411,163,165 - 11,178,119 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13411,214,779 - 11,229,180 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03411,193,877 - 11,208,264 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03411,404,868 - 11,419,269 (+)NCBIUU_Cfam_GSD_1.0
Clptm1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213244,260,711 - 244,284,271 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936815428,920 - 445,750 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936815421,996 - 445,577 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLPTM1L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1679,237,061 - 79,248,500 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11679,237,000 - 79,248,503 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21685,904,744 - 85,907,064 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CLPTM1L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.141,140,272 - 1,162,663 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl41,140,132 - 1,162,898 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605435,707,543 - 35,730,125 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Clptm1l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624751652,767 - 669,587 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624751652,857 - 669,400 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Clptm1l
478 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:149
Count of miRNA genes:139
Interacting mature miRNAs:146
Transcripts:ENSMUST00000022102
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142331Bxs6_mBXSB/MpJ autoimmune nephritis 6 (mouse)Not determined4521044283744746Mouse
1301593Heal8_mwound healing/regeneration 8 (mouse)Not determined1368053999102054119Mouse
1300573Elsgp2_melevated serum gp70 2 (mouse)Not determined135061682884617027Mouse
10412109Bxs7_mBXSB/MpJ autoimmune nephritis 7 (mouse)Not determined134521044283744746Mouse
10412235Scgq5_mspontaneous crescentic glomerulonephritis QTL 5 (mouse)Not determined133606090896239162Mouse
4142314Tailaq3_mtail length adjusted QTL 3 (mouse)Not determined55720354112431103Mouse
1558850Sgp3_mserum gp70 production 3 (mouse)Not determined135647045676971314Mouse
1301445Listr2_mlisteriosis resistance 2 (mouse)Not determined1366744601100744746Mouse
4141992W6q16_mweight 6 weeks QTL 16 (mouse)Not determined55720354112431103Mouse
4142372Moo2_mmodifier of Odc2 (mouse)Not determinedX5031841184318559Mouse
15039353Nmrs35_mNAFLD-associated magnetic resonance shift 35 (mouse)134058825374588253Mouse
10412163Wra1_mwheel running activity 1 (mouse)Not determined135913260093132738Mouse
4142241Tailq3_mtail length QTL 3 (mouse)Not determined55720354112431103Mouse
1300941Skl6_mskeletal size (tail length) 6 (mouse)Not determined136425082198250945Mouse
14747007Mancz11_mmandible centroid size 11 (mouse)1370111284104111284Mouse
4140959W10q17_mweight 10 weeks QTL 17 (mouse)Not determined55720354112431103Mouse
1357553Cia28_mcollagen induced arthritis 28 (mouse)Not determined135662924996239162Mouse
1302073Pgct1_mprimordial germ cell tumor locus 1 (mouse)Not determined135382078387820897Mouse
1301949Skull20_mskull morphology 20 (mouse)Not determined136425082198250945Mouse
1300668Pas10_mpulmonary adenoma susceptibility 10 (mouse)Not determined134148904275489158Mouse
1357563Bmch6_mbone mechanical trait 6 (mouse)Not determined135538498089385140Mouse
10402414Sgp5_mserum gp70 production 5 (mouse)Not determined1356470456105422186Mouse
1301666Eae13_msusceptibility to experimental allergic encephalomyelitis 13 (mouse)Not determined135031841184318559Mouse
26884393Humsd7_mhumerus midshaft diameter 7, 16 week (mouse)13395000076048119Mouse
14696726Kidrq3_mkidney weight, right QTL 3 (mouse)1368217066102217066Mouse
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20477612112898424Mouse
14746975Manh74_mmandible shape 74 (mouse)135247726986477269Mouse

Markers in Region
AW822051  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381373,620,207 - 73,620,459UniSTSGRCm38
MGSCv371373,757,655 - 73,757,907UniSTSGRCm37
Celera1375,949,083 - 75,949,335UniSTS
Cytogenetic Map13C1UniSTS
Whitehead/MRC_RH13666.37UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000022102   ⟹   ENSMUSP00000022102
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1373,752,125 - 73,768,724 (+)Ensembl
GRCm38.p6 Ensembl1373,604,006 - 73,620,605 (+)Ensembl
Ensembl Acc Id: ENSMUST00000221130
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1373,765,704 - 73,766,524 (+)Ensembl
GRCm38.p6 Ensembl1373,617,585 - 73,618,405 (+)Ensembl
Ensembl Acc Id: ENSMUST00000221417
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1373,760,434 - 73,762,791 (+)Ensembl
GRCm38.p6 Ensembl1373,612,315 - 73,614,672 (+)Ensembl
Ensembl Acc Id: ENSMUST00000222343
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1373,764,923 - 73,768,718 (+)Ensembl
GRCm38.p6 Ensembl1373,616,804 - 73,620,599 (+)Ensembl
RefSeq Acc Id: NM_146047   ⟹   NP_666159
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391373,752,121 - 73,768,758 (+)NCBI
GRCm381373,604,002 - 73,620,639 (+)ENTREZGENE
MGSCv371373,741,749 - 73,758,053 (+)RGD
Celera1375,932,878 - 75,949,515 (+)ENTREZGENE
cM Map13 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_666159 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH26562 (Get FASTA)   NCBI Sequence Viewer  
  BAC27798 (Get FASTA)   NCBI Sequence Viewer  
  BAC33311 (Get FASTA)   NCBI Sequence Viewer  
  BAE33624 (Get FASTA)   NCBI Sequence Viewer  
  EDL37054 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000022102
  ENSMUSP00000022102.8
GenBank Protein Q8BXA5 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_666159   ⟸   NM_146047
- UniProtKB: Q8C053 (UniProtKB/Swiss-Prot),   Q3U176 (UniProtKB/Swiss-Prot),   Q8R0P2 (UniProtKB/Swiss-Prot),   Q8BXA5 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000022102   ⟸   ENSMUST00000022102

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BXA5-F1-model_v2 AlphaFold Q8BXA5 1-539 view protein structure

Promoters
RGD ID:8680800
Promoter ID:EPDNEW_M18431
Type:initiation region
Name:Clptm1l_1
Description:Mus musculus CLPTM1-like , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381373,604,032 - 73,604,092EPDNEW
RGD ID:6823782
Promoter ID:MM_KWN:14659
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000022102
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361373,741,109 - 73,741,609 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2442892 AgrOrtholog
Ensembl Genes ENSMUSG00000021610 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000022102 ENTREZGENE
  ENSMUST00000022102.9 UniProtKB/Swiss-Prot
InterPro CLPTM1 UniProtKB/Swiss-Prot
KEGG Report mmu:218335 UniProtKB/Swiss-Prot
MGD MGI:2442892 ENTREZGENE
NCBI Gene 218335 ENTREZGENE
PANTHER CLEFT LIP AND PALATE TRANSMEMBRANE PROTEIN 1-LIKE PROTEIN UniProtKB/Swiss-Prot
  PTHR21347 UniProtKB/Swiss-Prot
Pfam CLPTM1 UniProtKB/Swiss-Prot
PhenoGen Clptm1l PhenoGen
UniProt CLP1L_MOUSE UniProtKB/Swiss-Prot
  Q3U176 ENTREZGENE
  Q8BXA5 ENTREZGENE
  Q8C053 ENTREZGENE
  Q8R0P2 ENTREZGENE
UniProt Secondary Q3U176 UniProtKB/Swiss-Prot
  Q8C053 UniProtKB/Swiss-Prot
  Q8R0P2 UniProtKB/Swiss-Prot