CLPTM1L (CLPTM1 like) - Rat Genome Database

Name: CLPTM1L
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: CLPTM1L (CLPTM1 like) Chlorocebus sabaeus

Analyze

Symbol:

CLPTM1L

Name:

CLPTM1 like

RGD ID:

18593118

Description:

ENCODES a protein that exhibits phospholipid scramblase activity (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 2 (ortholog); basal cell carcinoma (ortholog); dopamine transporter deficiency syndrome (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

cleft lip and palate transmembrane protein 1-like protein

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CLPTM1L (CLPTM1 like)	NCBI	Ortholog
Mus musculus (house mouse):	Clptm1l (CLPTM1-like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Clptm1l (CLPTM1-like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Clptm1l (CLPTM1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CLPTM1L (CLPTM1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CLPTM1L (CLPTM1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Clptm1l (CLPTM1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CLPTM1L (CLPTM1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Clptm1l (CLPTM1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	1,140,272 - 1,162,663 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	4	1,140,132 - 1,162,898 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666054	35,707,543 - 35,730,125 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal dominant dyskeratosis congenita 2 (ISO)

basal cell carcinoma (ISO)

dopamine transporter deficiency syndrome (ISO)

esophagus squamous cell carcinoma (ISO)

gallbladder carcinoma (ISO)

genetic disease (ISO)

hepatocellular carcinoma (ISO)

lung adenocarcinoma (ISO)

lung cancer (ISO)

Lung Neoplasms (ISO)

lung non-small cell carcinoma (ISO)

lung squamous cell carcinoma (ISO)

Lymphatic Metastasis (ISO)

lymphoid leukemia (ISO)

Mouth Neoplasms (ISO)

nasopharynx carcinoma (ISO)

oral squamous cell carcinoma (ISO)

pharynx squamous cell carcinoma (ISO)

prostate cancer (ISO)

Prostatic Neoplasms (ISO)

pulmonary emphysema (ISO)

urinary bladder cancer (ISO)

Uterine Cervical Neoplasms (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

endomembrane system (IEA)

endoplasmic reticulum membrane (ISO)

membrane (IEA)

Molecular Function

phospholipid scramblase activity (ISO)

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

CLPTM1L
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	1,140,272 - 1,162,663 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	4	1,140,132 - 1,162,898 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666054	35,707,543 - 35,730,125 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CLPTM1L
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	1,317,752 - 1,345,099 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	1,317,752 - 1,345,099 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	1,317,867 - 1,345,214 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	1,370,999 - 1,398,002 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	5	1,354,853 - 1,381,719 (-)	NCBI		Celera
Cytogenetic Map	5	p15.33	NCBI
HuRef	5	1,298,289 - 1,325,657 (-)	NCBI		HuRef
CHM1_1	5	1,317,036 - 1,344,039 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	1,225,592 - 1,255,482 (-)	NCBI		T2T-CHM13v2.0

Clptm1l
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	73,752,121 - 73,768,758 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	73,752,125 - 73,768,724 (+)	Ensembl		GRCm39 Ensembl
GRCm38	13	73,604,002 - 73,620,639 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	73,604,006 - 73,620,605 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	73,741,749 - 73,758,053 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	74,070,303 - 74,086,607 (+)	NCBI		MGSCv36	mm8
Celera	13	75,933,177 - 75,949,481 (+)	NCBI		Celera
Cytogenetic Map	13	C1	NCBI
cM Map	13	40.12	NCBI

Clptm1l
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	31,496,094 - 31,512,148 (-)	NCBI		GRCr8
mRatBN7.2	1	29,667,545 - 29,683,530 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	29,667,545 - 29,683,530 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	29,468,681 - 29,484,664 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	35,468,526 - 35,484,509 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	29,669,309 - 29,685,293 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	32,281,207 - 32,297,196 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	32,281,207 - 32,297,190 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	33,706,075 - 33,722,058 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	30,474,672 - 30,490,655 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	30,477,611 - 30,493,598 (-)	NCBI
Celera	1	28,315,536 - 28,331,519 (-)	NCBI		Celera
Cytogenetic Map	1	p11	NCBI

Clptm1l
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955504	677,772 - 695,660 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955504	677,824 - 695,660 (-)	NCBI	ChiLan1.0	ChiLan1.0

CLPTM1L
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	1,582,050 - 1,610,975 (-)	NCBI		NHGRI_mPanPan1-v2
PanPan1.1 Ensembl	5	1,361,571 - 1,388,415 (-)	Ensembl	panpan1.1		panPan2

CLPTM1L
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	34	11,263,274 - 11,277,666 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	34	11,263,162 - 11,277,436 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	34	15,773,118 - 15,787,519 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	34	11,163,710 - 11,178,126 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	34	11,163,165 - 11,178,119 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	34	11,214,779 - 11,229,180 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	34	11,193,877 - 11,208,264 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	34	11,404,868 - 11,419,269 (+)	NCBI		UU_Cfam_GSD_1.0

Clptm1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	244,260,711 - 244,284,271 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936815	428,920 - 445,750 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936815	421,996 - 445,577 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CLPTM1L
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	79,237,061 - 79,248,500 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	16	79,237,000 - 79,248,503 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	85,904,744 - 85,907,064 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Clptm1l
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624751	652,767 - 669,587 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624751	652,857 - 669,400 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium	36	20	58
Low			2
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007961141	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007961142	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037985274	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037985275	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000015461 ⟹ ENSCSAP00000013402

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	4	1,140,132 - 1,162,898 (-)	Ensembl

RefSeq Acc Id:

XM_007961141 ⟹ XP_007959332

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	4	1,140,272 - 1,162,662 (-)	NCBI
Vero_WHO_p1.0	NW_023666054	35,707,545 - 35,729,867 (-)	NCBI

Sequence:

show sequence

CCCGCGGCTGAGAGGCGGGCGGGCCGGGGGCGCCAGGCGCGGGGCAGCCATGTGGAGCGGCCGC
AGCTCCTTCACCAGCCTGGTGGTGGGCGTGTTCGTGGTCTACGTGGTGCACACCTGCTGGGTCA
TGTACGGCATCGTCTACACCCGCCCGTGCTCCGGCGACGCCAACTGCATCCAGCCCTACCTGGC
GCGGCGGCCCAAGCTGCAGCTGAGCGTATACACCACGACGAGGTCCCACCTGGGTACTGAAAAC
AACATCGACCTGGTCTTGAATGTGGAAGACTTTGATGTGGAGTCCAAATTTGAAAGGACAGTTA
ATGTTTCTGTACCAAAGAAAACGAGAAACAATGGGACGCTGTATGCCTACATCTTCCTCCATCA
CGCTGGGGTCCTGCCATGGCACGACGGGAAGCAGGTGCACCTGGTCAGTCCTCTGACCACCTAC
ATGGTCCCCAAGCCAGAAGAAATCAACCTGCTCACTGGGGAGTCTGATGCACAGCAGCAGCTCG
AGGCGGAGAAGAAGCCGACGAGCGCCCTGGATGAGCCAGTGTCCCACTGGAGACCGCGGCTGGC
ACTGAATGTGATGGCAGACAACTTTGTTTTCGACGGGTCTTCCCTGCCTGCCGATGTGCATCGG
TACATGAAGATGATCCAGCTGGGGAAGACCGTGCATTACCTGCCCATCCTGTTCATCGACCAGC
TCAGCAACCGTGTGAAGGACCTGATGGTCATAAACCGCTCCACCACCGAGCTGCCCCTCACCGT
GTCCTACGACAAGGTCTCGCTGGGACGGCTGCGCTTCTGGATCCACATGCAGGACGCCGTGTAC
TCCCTGCAGCAGTTCGGGTTTTCAGAGAAAGATGCTGATGAGGTGAAAGGAATTTTTGTAGATA
CCAACTTATACTTCCTGGCACTGACCTTCTTTGTCGCAGCGTTCCACCTTCTCTTTGATTTCCT
GGCCTTTAAAAACGACATCAGTTTCTGGAAGAAGAAGAAGAGCATGATCGGCATGTCCACCAAG
GCAGTGCTCTGGCGCTGCTTCAGCACCGTGGTCATCTTCCTGTTCCTGCTGGACGAGCAGACAA
GCCTGCTGGTGCTGGTCCCGGCGGGCGTTGGAGCCGCCATCGAGCTGTGGAAAGTGAAGAAGGC
ATTGAAGATGACTATTCTTTGGAGAGGCCTGATACCCGAATTTCAGTTTGGCACTTACAGCGAA
TCTGAGAGGAAAACCGAGGAGTACGATACTCAGGCCATGAAGTACTTGTCGTACCTGCTGTACC
CTCTCTGTGTTGGGGGTGCTGTCTATTCCCTCCTGAATATCAAGTATAAGAGCTGGTACTCGTG
GTTAATCAACAGCTTTGTCAATGGGGTCTATGCCTTTGGCTTCCTCTTCATGCTGCCCCAGCTG
TTTGTGAACTACAAGTTGAAGTCAGTGGCACATCTGCCCTGGAAGGCCTTCACCTACAAGGCTT
TCAACACCTTCATTGATGATGTCTTTGCCTTCATCATCACCATGCCCACGTCTCACCGGCTGGC
CTGCTTCCGGGACGATGTGGTGTTCCTGGTCTACCTGTACCAGCGGTGGCTTTATCCTGTGGAT
AAACGCAGAGTGAACGAGTTCGGGGAGTCCTACGAGGAGAAGGCCACGCGGGCGCCCCACACAG
ACTGAAGGCCGCCCGGGCTGCCGCTGGCCACGTGCGACTTGAATTGTCCATGAGTATTTTCAGA
AGCATTTGGTGGAATTCCCAGACATTTGCATTTTCTGTGTTGCCAAAATCGCTTTGGACATTTC
TCAGACATCTCCCAAGTCCCTCACATCAGATTTGGAGCTGGTGGCGCTCACGGTGCCCCCACGT
GTGAACGTCTGTCTTGGTCACAGAGCTGGGCGCTGCCAGTCAGCTTGAGCTGTGGTGGCTCCCG
GCACGCGAGTGTCTGGGGGTCGGCCATGTCCTCACACTGGCAGGTGCGGGAGCCCTCACAGGCA
AGGGGGCTGTCGGAGTTCCATTTCAGGTGGTTTTCTAAGTGCTCCTTATGTGAATTTCAAACAC
ATACGGAATTCATTCCGCGTGGACTCTGGGATCAAAGGCTCTTTCCTCTTTTGTTTGAGAGTTG
GTTGTTTTAAAGCTTAATGTATGTTTCTATTTTAAAATAAATTTTTCTGGCTGTGGCATTTTTC
TTGACCTGGTATAATGAAAGTATTTCAGATATTTGAGTTTAACCCTTTTCCAGAAAGTAATACA
TAATGTGGATTTATTTATGCATTAAAAGAGCAAATTTAAAGAGCCCTTCCCAA

hide sequence

RefSeq Acc Id:

XM_007961142 ⟹ XP_007959333

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	4	1,140,272 - 1,162,663 (-)	NCBI
Vero_WHO_p1.0	NW_023666054	35,707,647 - 35,730,125 (-)	NCBI

Sequence:

show sequence

GCCCGCGGCTGAGAGGCGGGCGGGCCGGGGGCGCCAGGCGCGGGGCAGCCATGTGGAGCGGCCG
CAGCTCCTTCACCAGCCTGGTGGTGGGCGTGTTCGTGGTCTACGTGGTGCACACCTGCTGGGTC
ATGTACGGCATCGTCTACACCCGCCCGTGCTCCGGCGACGCCAACTGCATCCAGCCCTACCTGG
CGCGGCGGCCCAAGCTGCAGCTGAGCGTATACACCACGACGAGGTCCCACCTGGGTACTGAAAA
CAACATCGACCTGGTCTTGAATGTGGAAGACTTTGATGTGGAGTCCAAATTTGAAAGGACAGTT
AATGTTTCTGTACCAAAGAAAACGAGAAACAATGGGACGCTGTATGCCTACATCTTCCTCCATC
ACGCTGGGGTCCTGCCATGGCACGACGGGAAGCAGGTGCACCTGGTCAGTCCTCTGACCACCTA
CATGGTCCCCAAGCCAGAAGAAATCAACCTGCTCACTGGGGAGTCTGATGCACAGCAGCTCGAG
GCGGAGAAGAAGCCGACGAGCGCCCTGGATGAGCCAGTGTCCCACTGGAGACCGCGGCTGGCAC
TGAATGTGATGGCAGACAACTTTGTTTTCGACGGGTCTTCCCTGCCTGCCGATGTGCATCGGTA
CATGAAGATGATCCAGCTGGGGAAGACCGTGCATTACCTGCCCATCCTGTTCATCGACCAGCTC
AGCAACCGTGTGAAGGACCTGATGGTCATAAACCGCTCCACCACCGAGCTGCCCCTCACCGTGT
CCTACGACAAGGTCTCGCTGGGACGGCTGCGCTTCTGGATCCACATGCAGGACGCCGTGTACTC
CCTGCAGCAGTTCGGGTTTTCAGAGAAAGATGCTGATGAGGTGAAAGGAATTTTTGTAGATACC
AACTTATACTTCCTGGCACTGACCTTCTTTGTCGCAGCGTTCCACCTTCTCTTTGATTTCCTGG
CCTTTAAAAACGACATCAGTTTCTGGAAGAAGAAGAAGAGCATGATCGGCATGTCCACCAAGGC
AGTGCTCTGGCGCTGCTTCAGCACCGTGGTCATCTTCCTGTTCCTGCTGGACGAGCAGACAAGC
CTGCTGGTGCTGGTCCCGGCGGGCGTTGGAGCCGCCATCGAGCTGTGGAAAGTGAAGAAGGCAT
TGAAGATGACTATTCTTTGGAGAGGCCTGATACCCGAATTTCAGTTTGGCACTTACAGCGAATC
TGAGAGGAAAACCGAGGAGTACGATACTCAGGCCATGAAGTACTTGTCGTACCTGCTGTACCCT
CTCTGTGTTGGGGGTGCTGTCTATTCCCTCCTGAATATCAAGTATAAGAGCTGGTACTCGTGGT
TAATCAACAGCTTTGTCAATGGGGTCTATGCCTTTGGCTTCCTCTTCATGCTGCCCCAGCTGTT
TGTGAACTACAAGTTGAAGTCAGTGGCACATCTGCCCTGGAAGGCCTTCACCTACAAGGCTTTC
AACACCTTCATTGATGATGTCTTTGCCTTCATCATCACCATGCCCACGTCTCACCGGCTGGCCT
GCTTCCGGGACGATGTGGTGTTCCTGGTCTACCTGTACCAGCGGTGGCTTTATCCTGTGGATAA
ACGCAGAGTGAACGAGTTCGGGGAGTCCTACGAGGAGAAGGCCACGCGGGCGCCCCACACAGAC
TGAAGGCCGCCCGGGCTGCCGCTGGCCACGTGCGACTTGAATTGTCCATGAGTATTTTCAGAAG
CATTTGGTGGAATTCCCAGACATTTGCATTTTCTGTGTTGCCAAAATCGCTTTGGACATTTCTC
AGACATCTCCCAAGTCCCTCACATCAGATTTGGAGCTGGTGGCGCTCACGGTGCCCCCACGTGT
GAACGTCTGTCTTGGTCACAGAGCTGGGCGCTGCCAGTCAGCTTGAGCTGTGGTGGCTCCCGGC
ACGCGAGTGTCTGGGGGTCGGCCATGTCCTCACACTGGCAGGTGCGGGAGCCCTCACAGGCAAG
GGGGCTGTCGGAGTTCCATTTCAGGTGGTTTTCTAAGTGCTCCTTATGTGAATTTCAAACACAT
ACGGAATTCATTCCGCGTGGACTCTGGGATCAAAGGCTCTTTCCTCTTTTGTTTGAGAGTTGGT
TGTTTTAAAGCTTAATGTATGTTTCTATTTTAAAATAAATTTTTCTGGCTGTGGCATTTTTCTT
GACCTGGTATAATGAAAGTATTTCAGATATTTGAGTTTAACCCTTTTCCAGAAAGTAATACATA
ATGTGGATTTATTTATGCATTAAAAGAGCAAATTTAAAGAGCCCTTCCCAA

hide sequence

RefSeq Acc Id:

XM_037985274 ⟹ XP_037841202

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666054	35,707,543 - 35,730,120 (-)	NCBI

RefSeq Acc Id:

XM_037985275 ⟹ XP_037841203

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666054	35,707,543 - 35,730,120 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_007959332	(Get FASTA)	NCBI Sequence Viewer
	XP_007959333	(Get FASTA)	NCBI Sequence Viewer
	XP_037841202	(Get FASTA)	NCBI Sequence Viewer
	XP_037841203	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000013402
	ENSCSAP00000013402.1

RefSeq Acc Id:	XP_007959333 ⟸ XM_007961142
- Peptide Label:	isoform X4
- UniProtKB:	A0A0D9RXR3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_007959332 ⟸ XM_007961141
- Peptide Label:	isoform X3
- UniProtKB:	A0A0D9RXR3 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCSAP00000013402 ⟸ ENSCSAT00000015461

RefSeq Acc Id:	XP_037841203 ⟸ XM_037985275
- Peptide Label:	isoform X2
- UniProtKB:	A0A0D9RXR3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_037841202 ⟸ XM_037985274
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9RXR3 (UniProtKB/TrEMBL)

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000017368	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000015461.1	UniProtKB/TrEMBL
InterPro	CLPTM1	UniProtKB/TrEMBL
NCBI Gene	CLPTM1L	ENTREZGENE
PANTHER	CLEFT LIP AND PALATE TRANSMEMBRANE PROTEIN 1-LIKE PROTEIN	UniProtKB/TrEMBL
	PTHR21347	UniProtKB/TrEMBL
Pfam	CLPTM1	UniProtKB/TrEMBL
UniProt	A0A0D9RXR3	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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