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Gene: Snx20 (sorting nexin 20) Mus musculus

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Symbol:

Snx20

Name:

sorting nexin 20

RGD ID:

1317182

MGI Page

MGI

Description:

Enables phosphatidylinositol-3-phosphate binding activity and phosphatidylinositol-4,5-bisphosphate binding activity. Predicted to be involved in protein transport. Located in early endosome membrane. Orthologous to human SNX20 (sorting nexin 20).

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

9130017C17Rik; sorting nexin-20

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SNX20 (sorting nexin 20)	HGNC	Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Snx20 (sorting nexin 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Snx20 (sorting nexin 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SNX20 (sorting nexin 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SNX20 (sorting nexin 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SNX20 (sorting nexin 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SNX20 (sorting nexin 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Snx20 (sorting nexin 20)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Snx20 (sorting nexin 20)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	SNX20 (sorting nexin 20)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	snx20 (sorting nexin 20)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Drosophila melanogaster (fruit fly):	CG3077	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	89,353,189 - 89,362,769 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	89,353,191 - 89,362,756 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	88,626,561 - 88,636,133 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	88,626,563 - 88,636,128 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	91,150,727 - 91,160,027 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	91,516,933 - 91,526,233 (-)	NCBI		MGSCv36	mm8
Celera	8	92,907,268 - 92,916,455 (-)	NCBI		Celera
Cytogenetic Map	8	C3	NCBI
cM Map	8	43.51	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Snx20	Mouse	Chromosome 16q12 Duplication Syndrome		ISO	SNX20 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Chromosome 16q12 duplication syndrome	ClinVar	PMID:25741868
Snx20	Mouse	nephronophthisis 14		ISO	SNX20 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Nephronophthisis 14	ClinVar	PMID:12915476 more ...
Snx20	Mouse	Townes-Brocks syndrome		ISO	SNX20 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Townes syndrome	ClinVar	PMID:12915476 more ...

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Snx20	Mouse	1,2-dimethylhydrazine	increases expression	EXP		6480464	1 and 2-Dimethylhydrazine results in increased expression of SNX20 mRNA	CTD	PMID:22206623
Snx20	Mouse	1,2-dimethylhydrazine	multiple interactions	EXP		6480464	Folic Acid inhibits the reaction [1 and 2-Dimethylhydrazine results in increased expression of SNX20 mRNA]	CTD	PMID:22206623
Snx20	Mouse	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	ISO	Snx20 (Rattus norvegicus)	6480464	Tetrachlorodibenzodioxin results in decreased expression of SNX20 mRNA	CTD	PMID:34747641
Snx20	Mouse	2,3,7,8-tetrachlorodibenzodioxine	increases expression	ISO	Snx20 (Rattus norvegicus)	6480464	Tetrachlorodibenzodioxin results in increased expression of SNX20 mRNA	CTD	PMID:33387578
Snx20	Mouse	4,4'-sulfonyldiphenol	decreases methylation	EXP		6480464	bisphenol S results in decreased methylation of SNX20 exon	CTD	PMID:33297965
Snx20	Mouse	4,4'-sulfonyldiphenol	affects methylation	EXP		6480464	bisphenol S affects the methylation of SNX20 gene	CTD	PMID:31683443
Snx20	Mouse	4-hydroxyphenyl retinamide	decreases expression	EXP		6480464	Fenretinide results in decreased expression of SNX20 mRNA	CTD	PMID:28973697
Snx20	Mouse	7,12-dimethyltetraphene	increases expression	EXP		6480464	9 more ...	CTD	PMID:32553695
Snx20	Mouse	acetamide	increases expression	ISO	Snx20 (Rattus norvegicus)	6480464	acetamide results in increased expression of SNX20 mRNA	CTD	PMID:31881176
Snx20	Mouse	aflatoxin B1	increases expression	ISO	Snx20 (Rattus norvegicus)	6480464	Aflatoxin B1 results in increased expression of SNX20 mRNA	CTD	PMID:25378103
Snx20	Mouse	Aflatoxin B2 alpha	increases methylation	ISO	SNX20 (Homo sapiens)	6480464	aflatoxin B2 results in increased methylation of SNX20 intron	CTD	PMID:30157460
Snx20	Mouse	alpha-Zearalanol	increases expression	ISO	Snx20 (Rattus norvegicus)	6480464	Zeranol results in increased expression of SNX20 mRNA	CTD	PMID:35163327
Snx20	Mouse	antirheumatic drug	decreases expression	ISO	SNX20 (Homo sapiens)	6480464	Antirheumatic Agents results in decreased expression of SNX20 mRNA	CTD	PMID:24449571
Snx20	Mouse	benzo[a]pyrene	increases mutagenesis	ISO	SNX20 (Homo sapiens)	6480464	Benzo(a)pyrene results in increased mutagenesis of SNX20 gene	CTD	PMID:25435355
Snx20	Mouse	benzo[a]pyrene	increases methylation	ISO	SNX20 (Homo sapiens)	6480464	Benzo(a)pyrene results in increased methylation of SNX20 3' UTR more ...	CTD	PMID:27901495
Snx20	Mouse	benzo[a]pyrene	multiple interactions	EXP		6480464	AHR protein affects the reaction [Benzo(a)pyrene affects the expression of SNX20 mRNA]	CTD	PMID:22228805
Snx20	Mouse	benzo[a]pyrene	decreases expression	EXP		6480464	Benzo(a)pyrene results in decreased expression of SNX20 mRNA	CTD	PMID:21569818
Snx20	Mouse	bisphenol A	increases expression	ISO	Snx20 (Rattus norvegicus)	6480464	bisphenol A results in increased expression of SNX20 mRNA	CTD	PMID:25181051
Snx20	Mouse	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of SNX20 mRNA	CTD	PMID:32156529 and PMID:38701888
Snx20	Mouse	buta-1,3-diene	decreases expression	EXP		6480464	1 and 3-butadiene results in decreased expression of SNX20 mRNA	CTD	PMID:29038090
Snx20	Mouse	carbon nanotube	increases expression	EXP		6480464	Nanotubes more ...	CTD	PMID:25554681
Snx20	Mouse	Cuprizon	increases expression	ISO	Snx20 (Rattus norvegicus)	6480464	Cuprizone results in increased expression of SNX20 mRNA	CTD	PMID:26577399 and PMID:27523638
Snx20	Mouse	Dibutyl phosphate	affects expression	ISO	SNX20 (Homo sapiens)	6480464	di-n-butylphosphoric acid affects the expression of SNX20 mRNA	CTD	PMID:37042841
Snx20	Mouse	dichloroacetic acid	increases expression	EXP		6480464	Dichloroacetic Acid results in increased expression of SNX20 mRNA	CTD	PMID:28962523
Snx20	Mouse	epoxiconazole	increases expression	EXP		6480464	epoxiconazole results in increased expression of SNX20 mRNA	CTD	PMID:35436446
Snx20	Mouse	folic acid	multiple interactions	EXP		6480464	Folic Acid inhibits the reaction [1 and 2-Dimethylhydrazine results in increased expression of SNX20 mRNA]	CTD	PMID:22206623
Snx20	Mouse	furan	increases expression	ISO	Snx20 (Rattus norvegicus)	6480464	furan results in increased expression of SNX20 mRNA	CTD	PMID:27387713
Snx20	Mouse	lidocaine	increases expression	ISO	Snx20 (Rattus norvegicus)	6480464	Lidocaine results in increased expression of SNX20 mRNA	CTD	PMID:35283115
Snx20	Mouse	lipopolysaccharide	multiple interactions	EXP		6480464	(+)-JQ1 compound inhibits the reaction [Lipopolysaccharides results in increased expression of SNX20 mRNA]	CTD	PMID:25890327
Snx20	Mouse	lipopolysaccharide	increases expression	EXP		6480464	Lipopolysaccharides results in increased expression of SNX20 mRNA	CTD	PMID:25890327
Snx20	Mouse	manganese(II) chloride	increases expression	ISO	Snx20 (Rattus norvegicus)	6480464	manganese chloride results in increased expression of SNX20 mRNA	CTD	PMID:28801915
Snx20	Mouse	methyl methanesulfonate	decreases expression	ISO	SNX20 (Homo sapiens)	6480464	Methyl Methanesulfonate results in decreased expression of SNX20 mRNA	CTD	PMID:23649840
Snx20	Mouse	N-methyl-4-phenylpyridinium	increases expression	ISO	Snx20 (Rattus norvegicus)	6480464	1-Methyl-4-phenylpyridinium results in increased expression of SNX20 mRNA	CTD	PMID:28801915
Snx20	Mouse	nickel atom	increases expression	ISO	SNX20 (Homo sapiens)	6480464	Nickel results in increased expression of SNX20 mRNA	CTD	PMID:25583101
Snx20	Mouse	nitrates	multiple interactions	EXP		6480464	[Particulate Matter results in increased abundance of Nitrates] which results in increased expression of SNX20 mRNA	CTD	PMID:35964746
Snx20	Mouse	ozone	multiple interactions	EXP		6480464	[Air Pollutants results in increased abundance of [Ozone co-treated with Soot]] which results in decreased expression of SNX20 mRNA and [Air Pollutants results in increased abundance of Ozone] which results in decreased expression of SNX20 mRNA	CTD	PMID:34911549
Snx20	Mouse	paracetamol	affects expression	EXP		6480464	Acetaminophen affects the expression of SNX20 mRNA	CTD	PMID:17562736
Snx20	Mouse	sodium arsenite	decreases expression	EXP		6480464	sodium arsenite results in decreased expression of SNX20 mRNA	CTD	PMID:37682722
Snx20	Mouse	thioacetamide	increases expression	ISO	Snx20 (Rattus norvegicus)	6480464	Thioacetamide results in increased expression of SNX20 mRNA	CTD	PMID:34492290
Snx20	Mouse	titanium dioxide	increases expression	EXP		6480464	titanium dioxide results in increased expression of SNX20 mRNA	CTD	PMID:23557971
Snx20	Mouse	titanium dioxide	affects methylation	EXP		6480464	titanium dioxide affects the methylation of SNX20 gene	CTD	PMID:35295148
Snx20	Mouse	trichloroethene	increases expression	ISO	Snx20 (Rattus norvegicus)	6480464	Trichloroethylene results in increased expression of SNX20 mRNA	CTD	PMID:33387578
Snx20	Mouse	triphenyl phosphate	affects expression	ISO	SNX20 (Homo sapiens)	6480464	triphenyl phosphate affects the expression of SNX20 mRNA	CTD	PMID:37042841
Snx20	Mouse	valproic acid	increases methylation	ISO	SNX20 (Homo sapiens)	6480464	Valproic Acid results in increased methylation of SNX20 gene	CTD	PMID:29154799

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Snx20	Mouse	protein transport	involved_in	IEA	UniProtKB-KW:KW-0653	2290270		UniProt	GO_REF:0000043

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Snx20	Mouse	early endosome membrane	is_active_in	IBA	PANTHER:PTN001463498 more ...	2290270		GO_Central	GO_REF:0000033
Snx20	Mouse	early endosome membrane	located_in	IDA		2290270	PMID:25882846	UniProt	PMID:25882846
Snx20	Mouse	nucleoplasm	located_in	ISO	UniProtKB:Q7Z614	2290270		GO_Central	GO_REF:0000119
Snx20	Mouse	nucleus	located_in	IEA	UniProtKB-SubCell:SL-0191	2290270		UniProt	GO_REF:0000044
Snx20	Mouse	plasma membrane	located_in	IEA	UniProtKB-SubCell:SL-0039	2290270		UniProt	GO_REF:0000044

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Snx20	Mouse	phosphatidylinositol phosphate binding	enables	IBA	PANTHER:PTN001463498 more ...	2290270		GO_Central	GO_REF:0000033
Snx20	Mouse	phosphatidylinositol-3-phosphate binding	enables	IDA		2290270	PMID:25882846	UniProt	PMID:25882846
Snx20	Mouse	phosphatidylinositol-4,5-bisphosphate binding	enables	IDA		2290270	PMID:25882846	UniProt	PMID:25882846
Snx20	Mouse	protein binding	enables	ISO	UniProtKB:Q14242	9068941	PMID:18196517	IntAct	PMID:18196517
Snx20	Mouse	protein binding	enables	ISO	UniProtKB:Q53G59	9068941	PMID:16189514	IntAct	PMID:16189514
Snx20	Mouse	protein binding	enables	ISO	UniProtKB:O95238 more ...	9068941	PMID:32296183	IntAct	PMID:32296183
Snx20	Mouse	protein binding	enables	ISO	UniProtKB:P08670 more ...	9068941	PMID:32814053	IntAct	PMID:32814053
Snx20	Mouse	protein binding	enables	ISO	UniProtKB:P13196 more ...	9068941	PMID:25416956	IntAct	PMID:25416956
Snx20	Mouse	protein binding	enables	ISO	UniProtKB:Q8IZU0 and UniProtKB:Q9UBB9	9068941	PMID:31515488	IntAct	PMID:31515488

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Snx20	Mouse	no abnormal phenotype detected		IAGP		5509061		MGI	PMID:18196517

#	Reference Title	Reference Citation
1.	Functional annotation of a full-length mouse cDNA collection.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2.	MGDs mouse GO annotations	MGD data from the GO Consortium
3.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4.	Mouse MP Annotation Import Pipeline	RGD automated import pipeline
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:10349636	PMID:11042159	PMID:11076861	PMID:12477932	PMID:16141072	PMID:16141073	PMID:18196517	PMID:21873635	PMID:25882846	PMID:37196079

Snx20
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	89,353,189 - 89,362,769 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	89,353,191 - 89,362,756 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	88,626,561 - 88,636,133 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	88,626,563 - 88,636,128 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	91,150,727 - 91,160,027 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	91,516,933 - 91,526,233 (-)	NCBI		MGSCv36	mm8
Celera	8	92,907,268 - 92,916,455 (-)	NCBI		Celera
Cytogenetic Map	8	C3	NCBI
cM Map	8	43.51	NCBI

SNX20
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	50,666,300 - 50,681,312 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	50,666,300 - 50,681,353 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	50,700,211 - 50,715,223 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	49,264,387 - 49,272,667 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	16	35,215,527 - 35,230,577 (-)	NCBI		Celera
Cytogenetic Map	16	q12.1	NCBI
HuRef	16	36,588,004 - 36,603,054 (-)	NCBI		HuRef
CHM1_1	16	52,107,729 - 52,122,779 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	16	56,463,916 - 56,478,923 (-)	NCBI		T2T-CHM13v2.0

Snx20
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	34,609,397 - 34,618,569 (+)	NCBI		GRCr8
mRatBN7.2	19	18,435,935 - 18,445,108 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	18,435,935 - 18,445,107 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	20,115,486 - 20,124,660 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	25,310,096 - 25,319,280 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	28,267,854 - 28,277,004 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	19,395,655 - 19,404,846 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	19,395,655 - 19,404,835 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	30,428,393 - 30,436,777 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	19,715,997 - 19,726,145 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	19	19,720,822 - 19,730,970 (+)	NCBI
Celera	19	18,322,643 - 18,331,589 (+)	NCBI		Celera
Cytogenetic Map	19	p11	NCBI

Snx20
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955433	8,727,493 - 8,731,398 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955433	8,725,950 - 8,734,699 (-)	NCBI	ChiLan1.0	ChiLan1.0

SNX20
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	60,124,381 - 60,138,701 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	66,030,121 - 66,044,337 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	30,928,545 - 30,944,509 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	49,814,315 - 49,822,209 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	49,809,077 - 49,818,459 (-)	Ensembl	panpan1.1		panPan2

SNX20
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	64,681,329 - 64,689,825 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	64,681,303 - 64,692,486 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	61,254,013 - 61,262,796 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	65,226,579 - 65,235,362 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	65,226,554 - 65,237,740 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	62,050,248 - 62,059,016 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	63,070,208 - 63,078,984 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	63,957,752 - 63,966,522 (+)	NCBI		UU_Cfam_GSD_1.0

SNX20
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	34,176,748 - 34,191,570 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	34,176,753 - 34,188,233 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

SNX20
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	36,467,839 - 36,481,083 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	36,469,366 - 36,480,514 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666047	40,021,561 - 40,031,658 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Snx20
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624757	6,014,238 - 6,019,378 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624757	6,011,750 - 6,019,378 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Snx20
857 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	157
Count of miRNA genes:	132
Interacting mature miRNAs:	147
Transcripts:	ENSMUST00000034087
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10043992	Hbnr11_m	Heligmosomoides bakeri nematode resistance 11 (mouse)			Not determined		8	66326836	100326976	Mouse
1301013	Capsq4_m	capsaicin sensitivity related QTL 4 (mouse)			Not determined		8	36630154	93455280	Mouse
12904012	Cfq10_m	conditioned fear QTL 10 (mouse)					8	80793404	89740987	Mouse
11353828	Gf7_m	gonadal fat pad weight 7 (mouse)					8	58928107	92928107	Mouse
1357470	Obq16_m	obesity QTL 16 (mouse)			Not determined		8	76411976	110412125	Mouse
1558875	Eae31_m	experimental allergic encephalomyelitis susceptibility 31 (mouse)			Not determined		8	35109930	115563747	Mouse
1357787	Vtbt5_m	vertebral trabecular bone trait 5 (mouse)			Not determined		8	66084397	100084549	Mouse
1301767	Fcsa2_m	femoral cross-sectional area 2 (mouse)			Not determined		8	71032003	105032123	Mouse
10412234	Nhdlq14_m	non-HDL QTL 14 (mouse)			Not determined		8	76411976	110412125	Mouse
1301766	Desp1_m	despair 1 (mouse)			Not determined		8	85486208	119486373	Mouse
1301253	Skmw2_m	skeletal muscle weight 2 (mouse)			Not determined		8	86443553	120443701	Mouse
4140967	Bmd39_m	bone mineral density 39 (mouse)			Not determined		8	32506572	117965439	Mouse
1357708	Orq1_m	ovulation rate QTL 1 (mouse)			Not determined		8	71740461	124622354	Mouse
4141285	Tgq18_m	triglyceride QTL 18 (mouse)			Not determined			64186736	98186736	Mouse
4141797	Skmw16_m	skeletal muscle weight 16 (mouse)			Not determined		8	64666176	98666325	Mouse
10755519	Wbc1_m	white blood cell count 1 (mouse)					8	82345783	116345783	Mouse
27226754	Femd6_m	femur midshaft diameter 6, 10 week (mouse)					8	37867154	110326632	Mouse
10043975	Obq31_m	obesity QTL 31 (mouse)			Not determined		8	59136404	93136404	Mouse
1301581	Char2_m	P. chabaudi malaria resistance QTL 2 (mouse)			Not determined		8	79808806	113809031	Mouse
10412287	Carg3_m	Candida albicans resistance gene 3 (mouse)			Not determined		8	56298872	90298872	Mouse
1301874	Hdlq16_m	HDL QTL 16 (mouse)			Not determined		8	76411976	110412125	Mouse
1301872	Cd4ts3_m	CD4 T cell subset 3 (mouse)			Not determined		8	72122809	106123021	Mouse
10045619	Heal14_m	wound healing/regeneration 14 (mouse)			Not determined		8	86443553	120443701	Mouse
1301688	Orch6_m	autoimmune orchitis resistance 6 (mouse)			Not determined		8	61513479	95513605	Mouse
1558780	Idd22_m	insulin dependent diabetes susceptibility 22 (mouse)			Not determined		8	71829531	105829637	Mouse
1300920	Pitm3_m	prion incubation time 3 (mouse)			Not determined		8	73929123	107929226	Mouse
12904744	Carcdq1_m	cardiac collagen deposition QTL 1 (mouse)					8	40162297	95416226	Mouse
4141395	Char2a_m	P. chabaudi malaria resistance QTL 2a (mouse)			Not determined			71589427	90929226	Mouse
10755530	Wbc2_m	white blood cell count 2 (mouse)					8	81819296	115819296	Mouse
1302049	Heal1_m	wound healing/regeneration 1 (mouse)			Not determined		8	86443553	120443701	Mouse
4142283	Imraq2_m	immune response to AAV2 QTL 2 (mouse)			Not determined		8	71032003	105032123	Mouse
27095912	Pglq14_m	pelvic girdle length QTL 14, 16 week (mouse)					8	74126628	126826739	Mouse
4142023	W3q5_m	weight 3 weeks QTL 5 (mouse)			Not determined			71740461	124622354	Mouse
1301099	Cbm2_m	cerebellum weight 2 (mouse)			Not determined		8	79245241	113245331	Mouse
1558890	Lith18_m	lithogenic gene 18 (mouse)			Not determined		8	76402145	110402251	Mouse

BE199892

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	8	88,626,895 - 88,627,041	UniSTS	GRCm38
MGSCv37	8	91,150,794 - 91,150,940	UniSTS	GRCm37
Celera	8	92,907,335 - 92,907,481	UniSTS
Cytogenetic Map	8	C4	UniSTS
Whitehead/MRC_RH	8	1046.25	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	NM_027840	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006531371	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_011248503	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC126054	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF395844	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK018632	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK042068	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK157032	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK157884	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK170109	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC039809	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466525	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000034087 ⟹ ENSMUSP00000034087

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	89,353,191 - 89,362,756 (-)	Ensembl
GRCm38.p6 Ensembl	8	88,626,563 - 88,636,128 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000209806

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	89,357,735 - 89,362,729 (-)	Ensembl
GRCm38.p6 Ensembl	8	88,631,107 - 88,636,101 (-)	Ensembl

RefSeq Acc Id:

NM_027840 ⟹ NP_082116

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	89,353,456 - 89,362,756 (-)	NCBI
GRCm38	8	88,626,828 - 88,636,128 (-)	NCBI
MGSCv37	8	91,150,727 - 91,160,027 (-)	RGD
Celera	8	92,907,268 - 92,916,455 (-)	RGD
cM Map	8		ENTREZGENE

Sequence:

show sequence

CACTCAGCCCATTTCCTGTTTTCAAAAGGAGAACTCAGGATTGCGGCAGACATTCAGCCATCTAGTTGGACCTTGCAAAAAGAGATCGGACTGGGGCATGTGACTCTCCTGGACCCCGAACCCACAAA
GCCTGAAGATCCCAGCTCAGGTAGCCTTGGAGCATGGCAAGTCCAGAGCATCCTGGGAGCCCTGGCTGGAGAGGACCCATAAACCAATGCAGAACAAGGACCAGACAGGAAGTATTGCCCCCAGGCCC
AGACCTCCCATGTCCAGGACCAGAAGAAGCCCAAGATGGCCCCAGCTCTAACTCCAGCATGACCACAAGGGAACTCCAGGAACACTGGCAGAAGGAGAAGAGCCGCTGGAAACATGTCAGGCTGCTCT
TTGAGATCGCCTCAGCCCGCATAGAGGAGAGGAAAGTCTCCAAGTTTGTGATGTACCAAGTCGTGGTCATCCAGACCGGGAGCTTCGACAGCGACAAGGCGGTGGTGGAACGGCGCTACTCGGACTTC
GAGAGGCTGCAGAAGGCCCTCCTCAAGCGCTTCGGGCCGGAGCTGGAGGACGTGGCGTTCCCGCGGAAGCGCCTGACCGGGAACCTGTCGGCCGAGACCATCTGCGAGCGGCGCCGGGAGCTGCGCGA
GTACCTGCGGCTGCTTTACGCCGTGCGCGCCGTGCGCCGCTCGCGCGAGTTCCTCGACTTCCTCACGCGGCCCGAGCTGCGCGAGGCCTTCGGCTGCCTGCGCGCCGGCCAGTACGCGCGCGCGCTCG
AGCTGCTGGGCCGCGCGCTGCCGCTGCAGGAGAAGCTGACGGCGCACTGCCCGAGCGCCGCCGTGCCCGCGCTTTGCGCCGCGCTCGTCTGCTTGCGCGACCTCGAGCGGCCGGCCGAGGCCTTCGCA
GTCGGCGAGCGCGCGCTGCGATGCCTGCGGACGCGCGAGAACCACCGCTACTACGCGCCACTGCTGGACGCCATGGTGCGCCTGGCCTACGCGCTGGGCAAGGACTTCGCGGCGCTGCAGAGCCGCCT
GGACGAGAACCAGCTCCGGAGGCCCACGCACAGGGACGCCACCCTGAAGGAGCTCACGGTGCGGGAGTATCTGTCCTGAGGCGGCCCGACAGGTGCCCTGGCATCCAGGCTGCGCAGACAGTGTCGTG
GGTCGCCATCGCCTGGGGGCTTTGCTGGACGGCTTTGGACAAGCCTGGCTTGAGGGGCTCCTGGGACCTCTGGAAGAGCCATCTTGTGACCCTTGAGTGCCAGGTTCTCTAAATCCTAAGCCGACAAG
CTCAGCTATCAAAACTTTGCAAGTACTATGGACCTTACGTGCCATCTCGGAATGGGAAGGACTTGCCTACCGCACAGAATGTGTTCAAGGCCAGCCTAAAAAGTTTGCTGAGACTGGCTCCAAATAAA
GAGGTCTGAGGATGTGACTTAATGGC

hide sequence

RefSeq Acc Id:

XM_006531371 ⟹ XP_006531434

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	89,353,189 - 89,362,769 (-)	NCBI
GRCm38	8	88,626,561 - 88,636,131 (-)	NCBI

Sequence:

show sequence

CCCTGAAGGAGATCACTCAGCCCATTTCCTGTTTTCAAAAGGAGAACTCAGGATTGCGGCAGAC
ATTCAGCCATCTAGTTGGACCTTGCAAAAAGAGATCGGACTGGGGCATGTGACTCTCCTGGACCCCGAACCCACAAAGCCTGAAGATCCCAGGTAGCCTTGGAGCATGGCAAGTCCAGAGCATCCTGG
GAGCCCTGGCTGGAGAGGACCCATAAACCAATGCAGAACAAGGACCAGACAGGAAGTATTGCCCCCAGGCCCAGACCTCCCATGTCCAGGACCAGAAGAAGCCCAAGATGGCCCCAGCTCTAACTCCA
GCATGACCACAAGGGAACTCCAGGAACACTGGCAGAAGGAGAAGAGCCGCTGGAAACATGTCAGGCTGCTCTTTGAGATCGCCTCAGCCCGCATAGAGGAGAGGAAAGTCTCCAAGTTTGTGATGTAC
CAAGTCGTGGTCATCCAGACCGGGAGCTTCGACAGCGACAAGGCGGTGGTGGAACGGCGCTACTCGGACTTCGAGAGGCTGCAGAAGGCCCTCCTCAAGCGCTTCGGGCCGGAGCTGGAGGACGTGGC
GTTCCCGCGGAAGCGCCTGACCGGGAACCTGTCGGCCGAGACCATCTGCGAGCGGCGCCGGGAGCTGCGCGAGTACCTGCGGCTGCTTTACGCCGTGCGCGCCGTGCGCCGCTCGCGCGAGTTCCTCG
ACTTCCTCACGCGGCCCGAGCTGCGCGAGGCCTTCGGCTGCCTGCGCGCCGGCCAGTACGCGCGCGCGCTCGAGCTGCTGGGCCGCGCGCTGCCGCTGCAGGAGAAGCTGACGGCGCACTGCCCGAGC
GCCGCCGTGCCCGCGCTTTGCGCCGCGCTCGTCTGCTTGCGCGACCTCGAGCGGCCGGCCGAGGCCTTCGCAGTCGGCGAGCGCGCGCTGCGATGCCTGCGGACGCGCGAGAACCACCGCTACTACGC
GCCACTGCTGGACGCCATGGTGCGCCTGGCCTACGCGCTGGGCAAGGACTTCGCGGCGCTGCAGAGCCGCCTGGACGAGAACCAGCTCCGGAGGCCCACGCACAGGGACGCCACCCTGAAGGAGCTCA
CGGTGCGGGAGTATCTGTCCTGAGGCGGCCCGACAGGTGCCCTGGCATCCAGGCTGCGCAGACAGTGTCGTGGGTCGCCATCGCCTGGGGGCTTTGCTGGACGGCTTTGGACAAGCCTGGCTTGAGGG
GCTCCTGGGACCTCTGGAAGAGCCATCTTGTGACCCTTGAGTGCCAGGTTCTCTAAATCCTAAGCCGACAAGCTCAGCTATCAAAACTTTGCAAGTACTATGGACCTTACGTGCCATCTCGGAATGGG
AAGGACTTGCCTACCGCACAGAATGTGTTCAAGGCCAGCCTAAAAAGTTTGCTGAGACTGGCTCCAAATAAAGAGGTCTGAGGATGTGACTTAATGGCACAGTGCTTGTGAGACTCCATTGCTTCAAT
CTAAAGTACTACCAAAAAAGAAAAAGAAGCACCTATTTTTGTAGACAGCCAGAGGAGAAATTTACACAAACATGCAATGCACTTCCTTAAAGACTACCCCCTCCTATAGCCCCAGATCTTCCCTTCGC
TCCTGTACCCCACCCCCCAATCAGTTGCAAGTATTTGCATCCATTAACCCACAGACCTAGTTCCTCCTTTTGGTGTCACGCTTTCAGTAAAACAAGCTCTTCAGGGGAA

hide sequence

RefSeq Acc Id:

XM_011248503 ⟹ XP_011246805

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	89,353,189 - 89,362,769 (-)	NCBI
GRCm38	8	88,626,561 - 88,636,133 (-)	NCBI

Sequence:

show sequence

CCCTGAAGGAGATCACTCAGCCCATTTCCTGTTTTCAAAAGGAGAACTCAGGATTGCGGCAGACATTCAGCCATCTAGTTGGACCTTGCAAAAAGAGATCGGACTGGGGCATGTGACTCTCCTGGACC
CCGAACCCACAAAGCCTGAAGATCCCAGCTCAGGTAGCCTTGGAGCATGGCAAGTCCAGAGCATCCTGGGAGCCCTGGCTGGAGAGGACCCATAAACCAATGCAGAACAAGGACCAGACAGGAAGTAT
TGCCCCCAGGCCCAGACCTCCCATGTCCAGGACCAGAAGAAGCCCAAGATGGCCCCAGCTCTAACTCCAGCATGACCACAAGGGAACTCCAGGAACACTGGCAGAAGGAGAAGAGCCGCTGGAAACAT
GTCAGGCTGCTCTTTGAGATCGCCTCAGCCCGCATAGAGGAGAGGAAAGTCTCCAAGTTTGTGATGTACCAAGTCGTGGTCATCCAGACCGGGAGCTTCGACAGCGACAAGGCGGTGGTGGAACGGCG
CTACTCGGACTTCGAGAGGCTGCAGAAGGCCCTCCTCAAGCGCTTCGGGCCGGAGCTGGAGGACGTGGCGTTCCCGCGGAAGCGCCTGACCGGGAACCTGTCGGCCGAGACCATCTGCGAGCGGCGCC
GGGAGCTGCGCGAGTACCTGCGGCTGCTTTACGCCGTGCGCGCCGTGCGCCGCTCGCGCGAGTTCCTCGACTTCCTCACGCGGCCCGAGCTGCGCGAGGCCTTCGGCTGCCTGCGCGCCGGCCAGTAC
GCGCGCGCGCTCGAGCTGCTGGGCCGCGCGCTGCCGCTGCAGGAGAAGCTGACGGCGCACTGCCCGAGCGCCGCCGTGCCCGCGCTGCGATGCCTGCGGACGCGCGAGAACCACCGCTACTACGCGCC
ACTGCTGGACGCCATGGTGCGCCTGGCCTACGCGCTGGGCAAGGACTTCGCGGCGCTGCAGAGCCGCCTGGACGAGAACCAGCTCCGGAGGCCCACGCACAGGGACGCCACCCTGAAGGAGCTCACGG
TGCGGGAGTATCTGTCCTGAGGCGGCCCGACAGGTGCCCTGGCATCCAGGCTGCGCAGACAGTGTCGTGGGTCGCCATCGCCTGGGGGCTTTGCTGGACGGCTTTGGACAAGCCTGGCTTGAGGGGCT
CCTGGGACCTCTGGAAGAGCCATCTTGTGACCCTTGAGTGCCAGGTTCTCTAAATCCTAAGCCGACAAGCTCAGCTATCAAAACTTTGCAAGTACTATGGACCTTACGTGCCATCTCGGAATGGGAAG
GACTTGCCTACCGCACAGAATGTGTTCAAGGCCAGCCTAAAAAGTTTGCTGAGACTGGCTCCAAATAAAGAGGTCTGAGGATGTGACTTAATGGCACAGTGCTTGTGAGACTCCATTGCTTCAATCTA
AAGTACTACCAAAAAAGAAAAAGAAGCACCTATTTTTGTAGACAGCCAGAGGAGAAATTTACACAAACATGCAATGCACTTCCTTAAAGACTACCCCCTCCTATAGCCCCAGATCTTCCCTTCGCTCC
TGTACCCCACCCCCCAATCAGTTGCAAGTATTTGCATCCATTAACCCACAGACCTAGTTCCTCCTTTTGGTGTCACGCTTTCAGTAAAACAAGCTCTTCAGGGGAA

hide sequence


Protein RefSeqs	NP_082116	(Get FASTA)	NCBI Sequence Viewer
	XP_006531434	(Get FASTA)	NCBI Sequence Viewer
	XP_011246805	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH39809	(Get FASTA)	NCBI Sequence Viewer
	AAK73125	(Get FASTA)	NCBI Sequence Viewer
	BAB31317	(Get FASTA)	NCBI Sequence Viewer
	BAC31150	(Get FASTA)	NCBI Sequence Viewer
	BAE33939	(Get FASTA)	NCBI Sequence Viewer
	EDL11058	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000034087
GenBank Protein	Q9D2Y5	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_082116 ⟸ NM_027840

- UniProtKB:

Q8CHQ3 (UniProtKB/Swiss-Prot), Q544B6 (UniProtKB/Swiss-Prot), Q3U0B6 (UniProtKB/Swiss-Prot), Q9D2Y5 (UniProtKB/Swiss-Prot), A0A0R4J0D0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MASPEHPGSPGWRGPINQCRTRTRQEVLPPGPDLPCPGPEEAQDGPSSNSSMTTRELQEHWQKEKSRWKHVRLLFEIASARIEERKVSKFVMYQVVVIQTGSFDSDKAVVERRYSDFERLQKALLKRF
GPELEDVAFPRKRLTGNLSAETICERRRELREYLRLLYAVRAVRRSREFLDFLTRPELREAFGCLRAGQYARALELLGRALPLQEKLTAHCPSAAVPALCAALVCLRDLERPAEAFAVGERALRCLRT
RENHRYYAPLLDAMVRLAYALGKDFAALQSRLDENQLRRPTHRDATLKELTVREYLS

hide sequence

RefSeq Acc Id:	XP_006531434 ⟸ XM_006531371
- Peptide Label:	isoform X1
- UniProtKB:	Q8CHQ3 (UniProtKB/Swiss-Prot), Q544B6 (UniProtKB/Swiss-Prot), Q3U0B6 (UniProtKB/Swiss-Prot), Q9D2Y5 (UniProtKB/Swiss-Prot), A0A0R4J0D0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASPEHPGSPGWRGPINQCRTRTRQEVLPPGPDLPCPGPEEAQDGPSSNSSMTTRELQEHWQKE KSRWKHVRLLFEIASARIEERKVSKFVMYQVVVIQTGSFDSDKAVVERRYSDFERLQKALLKRFGPELEDVAFPRKRLTGNLSAETICERRRELREYLRLLYAVRAVRRSREFLDFLTRPELREAFGC LRAGQYARALELLGRALPLQEKLTAHCPSAAVPALCAALVCLRDLERPAEAFAVGERALRCLRTRENHRYYAPLLDAMVRLAYALGKDFAALQSRLDENQLRRPTHRDATLKELTVREYLS hide sequence

RefSeq Acc Id:	XP_011246805 ⟸ XM_011248503
- Peptide Label:	isoform X2
- UniProtKB:	Q9D2Y5 (UniProtKB/Swiss-Prot), Q8CHQ3 (UniProtKB/Swiss-Prot), Q544B6 (UniProtKB/Swiss-Prot), Q3U0B6 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MASPEHPGSPGWRGPINQCRTRTRQEVLPPGPDLPCPGPEEAQDGPSSNSSMTTRELQEHWQKEKSRWKHVRLLFEIASARIEERKVSKFVMYQVVVIQTGSFDSDKAVVERRYSDFERLQKALLKRF GPELEDVAFPRKRLTGNLSAETICERRRELREYLRLLYAVRAVRRSREFLDFLTRPELREAFGCLRAGQYARALELLGRALPLQEKLTAHCPSAAVPALRCLRTRENHRYYAPLLDAMVRLAYALGKD FAALQSRLDENQLRRPTHRDATLKELTVREYLS hide sequence

Ensembl Acc Id:

ENSMUSP00000034087 ⟸ ENSMUST00000034087

Protein Domains

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9D2Y5-F1-model_v2	AlphaFold	Q9D2Y5	1-313	view protein structure

RGD ID:

8667825

Promoter ID:

EPDNEW_M11944

Type:

initiation region

Name:

Snx20_1

Description:

Mus musculus sorting nexin 20 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	8	88,636,067 - 88,636,127	EPDNEW

RGD ID:

6843754

Promoter ID:

MM_KWN:55215

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Lung, Spleen

Transcripts:

ENSMUST00000034087

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	8	91,159,634 - 91,160,134 (-)	MPROMDB

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000031662	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000034087	ENTREZGENE
Gene3D-CATH	3.30.1520.10	UniProtKB/Swiss-Prot
InterPro	Phox	UniProtKB/Swiss-Prot
	PX_dom_sf	UniProtKB/Swiss-Prot
	SNX20/SNX21	UniProtKB/Swiss-Prot
	TPR-like_helical_dom_sf	UniProtKB/Swiss-Prot
KEGG Report	mmu:71607	UniProtKB/Swiss-Prot
MGD	MGI:1918857	ENTREZGENE
NCBI Gene	71607	ENTREZGENE
PANTHER	PTHR20939	UniProtKB/Swiss-Prot
	SORTING NEXIN-20	UniProtKB/Swiss-Prot
Pfam	PF00787	UniProtKB/Swiss-Prot
PhenoGen	Snx20	PhenoGen
PROSITE	PS50195	UniProtKB/Swiss-Prot
SMART	SM00312	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF48452	UniProtKB/Swiss-Prot
	SSF64268	UniProtKB/Swiss-Prot
UniProt	A0A0R4J0D0	ENTREZGENE, UniProtKB/TrEMBL
	Q3U0B6	ENTREZGENE
	Q544B6	ENTREZGENE
	Q8CHQ3	ENTREZGENE
	Q9D2Y5	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	Q3U0B6	UniProtKB/Swiss-Prot
	Q544B6	UniProtKB/Swiss-Prot
	Q8CHQ3	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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