Dnajc11 (DnaJ heat shock protein family (Hsp40) member C11) - Rat Genome Database

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Gene: Dnajc11 (DnaJ heat shock protein family (Hsp40) member C11) Mus musculus
Analyze
Symbol: Dnajc11
Name: DnaJ heat shock protein family (Hsp40) member C11
RGD ID: 1317095
MGI Page MGI
Description: Involved in cristae formation. Located in mitochondrial inner membrane. Is expressed in submandibular gland primordium. Orthologous to human DNAJC11 (DnaJ heat shock protein family (Hsp40) member C11).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: DnaJ (Hsp40) homolog, subfamily C, member 11; dnaJ homolog subfamily C member 11; E030019A03Rik
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394152,018,177 - 152,066,416 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4152,018,148 - 152,066,594 (+)EnsemblGRCm39 Ensembl
GRCm384151,933,720 - 151,981,959 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4151,933,691 - 151,982,137 (+)EnsemblGRCm38mm10GRCm38
MGSCv374151,307,829 - 151,356,068 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364150,777,531 - 150,820,484 (+)NCBIMGSCv36mm8
Celera4154,218,847 - 154,266,983 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map482.77NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
cristae formation  (IBA,IMP,ISO)

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12520002   PMID:12819125   PMID:12865426   PMID:12904583   PMID:12964007  
PMID:14610273   PMID:15489334   PMID:15741177   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16919269   PMID:17015433   PMID:17967808   PMID:18614015   PMID:18799693   PMID:21267068  
PMID:21873635   PMID:25111180   PMID:27113764   PMID:28130547   PMID:29222160   PMID:31138677   PMID:31550165   PMID:32560809   PMID:32581705   PMID:36417873  


Genomics

Comparative Map Data
Dnajc11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394152,018,177 - 152,066,416 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4152,018,148 - 152,066,594 (+)EnsemblGRCm39 Ensembl
GRCm384151,933,720 - 151,981,959 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4151,933,691 - 151,982,137 (+)EnsemblGRCm38mm10GRCm38
MGSCv374151,307,829 - 151,356,068 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364150,777,531 - 150,820,484 (+)NCBIMGSCv36mm8
Celera4154,218,847 - 154,266,983 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map482.77NCBI
DNAJC11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3816,634,170 - 6,701,816 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl16,634,168 - 6,701,924 (-)EnsemblGRCh38hg38GRCh38
GRCh3716,694,230 - 6,761,876 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3616,616,818 - 6,684,460 (-)NCBINCBI36Build 36hg18NCBI36
Build 3416,628,496 - 6,696,139NCBI
Celera15,808,085 - 5,875,829 (-)NCBICelera
Cytogenetic Map1p36.31NCBI
HuRef15,841,691 - 5,909,280 (-)NCBIHuRef
CHM1_116,682,946 - 6,750,670 (-)NCBICHM1_1
T2T-CHM13v2.016,159,834 - 6,227,482 (-)NCBIT2T-CHM13v2.0
Dnajc11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85167,724,776 - 167,770,032 (+)NCBIGRCr8
mRatBN7.25162,442,042 - 162,487,966 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5162,442,026 - 162,488,169 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5165,144,997 - 165,190,379 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05166,965,766 - 167,011,245 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05166,927,965 - 166,973,444 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05169,109,907 - 169,154,725 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5169,109,907 - 169,154,720 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05172,668,492 - 172,712,647 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45169,163,307 - 169,208,563 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15169,173,490 - 169,218,754 (+)NCBI
Celera5160,674,864 - 160,720,096 (+)NCBICelera
Cytogenetic Map5q36NCBI
Dnajc11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554865,980,656 - 6,011,751 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554865,959,083 - 6,011,177 (+)NCBIChiLan1.0ChiLan1.0
DNAJC11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21221,524,315 - 221,591,236 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11220,166,508 - 220,233,435 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v015,398,198 - 5,464,738 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.116,649,908 - 6,716,750 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl16,649,908 - 6,716,755 (-)Ensemblpanpan1.1panPan2
DNAJC11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1560,450,389 - 60,525,852 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl560,436,516 - 60,525,780 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha560,459,863 - 60,535,485 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0560,666,266 - 60,742,972 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl560,665,412 - 60,742,908 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1560,665,560 - 60,741,961 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0560,531,774 - 60,607,150 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0560,934,199 - 61,010,060 (-)NCBIUU_Cfam_GSD_1.0
Dnajc11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505830,893,969 - 30,954,982 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366231,379,128 - 1,440,241 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366231,379,131 - 1,440,241 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DNAJC11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl667,463,374 - 67,529,930 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1667,463,366 - 67,529,958 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2662,365,898 - 62,379,131 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DNAJC11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120125,043,357 - 125,113,008 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20125,043,379 - 125,111,503 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605429,085,155 - 29,156,780 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dnajc11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248184,856,629 - 4,905,788 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248184,856,558 - 4,905,788 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Dnajc11
2688 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2746
Count of miRNA genes:783
Interacting mature miRNAs:1025
Transcripts:ENSMUST00000062904, ENSMUST00000123551, ENSMUST00000124955, ENSMUST00000128582, ENSMUST00000133959, ENSMUST00000138738, ENSMUST00000139069, ENSMUST00000139555, ENSMUST00000142198, ENSMUST00000147625, ENSMUST00000148048, ENSMUST00000149337
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142077Ignpq2_mIgA nephropathy QTL 2 (mouse)Not determined4133676733156860686Mouse
4141180Ssic1_msusceptibility to small intestinal cancer 1 (mouse)Not determined120674005154674151Mouse
4142139Adip12_madiposity 12 (mouse)Not determined4124621281156860686Mouse
1302102Bis1_mbeta-carboline-induced seizures 1 (mouse)Not determined4119864433153864536Mouse
10043996Gct5_mgranulosa cell tumorigenesis 5 (mouse)Not determined4127784226156860686Mouse
10043985Stheal12_msoft tissue heal 12 (mouse)Not determined4121342649155342753Mouse
1301982Pltiq1_mphospholipid transfer protein inducibility QTL 1 (mouse)Not determined4124621281156860686Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
1300803Sluc6_msusceptibility to lung cancer 6 (mouse)Not determined4120674005154674151Mouse
4142061Chlq16_mcirculating hormone level QTL 16 (mouse)Not determined4121342649155342753Mouse
1300933Cdcs9_mcytokine deficiency colitis susceptibility 9 (mouse)Not determined4125230872156860686Mouse
1300874Gasa2_mgastritis type A susceptibility locus 2 (mouse)Not determined4133010494156860686Mouse
1300621Tpnr1_mthermal pain response 1 (mouse)Not determined4125230872156860686Mouse
1301964Bw8q2_mbody weight at 8 weeks QTL 2 (mouse)Not determined4119864433153864536Mouse
1301452Elsgp1_melevated serum gp70 1 (mouse)Not determined4121342649155342753Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
1301108Scon2_msucrose consumption 2 (mouse)Not determined4134654451156860686Mouse
1300858Tafat_mtally ho associated mesenteric fat pad weight (mouse)Not determined4124621281156860686Mouse
1300537Ap3q_malcohol preference 3 QTL (mouse)Not determined4134654451156860686Mouse
10412210Cypr6_mcytokine production 6 (mouse)Not determined4120617848154617995Mouse
10045620Heal22_mwound healing/regeneration 22 (mouse)Not determined4125230872156860686Mouse
4142481Gct1_mgranulosa cell tumorigenesis 1 (mouse)Not determined4127784226156860686Mouse
10755531Lymph3_mlymphocyte differential 3 (mouse)4124553483156860686Mouse
11533916Mts1_mmammary tumor susceptibility 1 (mouse)4125289325156860686Mouse
13503348Bntq18_mbone traits QTL 18 (mouse)4120617848154617995Mouse
1300780Cocrb16_mcocaine related behavior 16 (mouse)Not determined4138943725156860686Mouse

Markers in Region
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS
D11Bhm20  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map19D1UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map12D1UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map4E1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map16C1.1UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map1C1.3UniSTS
Cytogenetic Map13D2UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A2UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map16C4UniSTS
Cytogenetic Map3G1UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map7B1-B2UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic Map11B1.1UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic Map10D2UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXC-DUniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map11A3.2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map19BUniSTS
cM Map1144.15UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_172704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK053156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK089983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL611931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC027574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC075619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC079852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC085257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY784439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV663024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000062904   ⟹   ENSMUSP00000051643
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4152,018,148 - 152,066,594 (+)Ensembl
GRCm38.p6 Ensembl4151,933,691 - 151,982,137 (+)Ensembl
Ensembl Acc Id: ENSMUST00000123551
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4152,041,600 - 152,055,999 (+)Ensembl
GRCm38.p6 Ensembl4151,957,143 - 151,971,542 (+)Ensembl
Ensembl Acc Id: ENSMUST00000124955
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4152,064,200 - 152,065,684 (+)Ensembl
GRCm38.p6 Ensembl4151,979,743 - 151,981,227 (+)Ensembl
Ensembl Acc Id: ENSMUST00000128582
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4152,018,196 - 152,065,675 (+)Ensembl
GRCm38.p6 Ensembl4151,933,739 - 151,981,218 (+)Ensembl
Ensembl Acc Id: ENSMUST00000133959
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4152,018,191 - 152,041,952 (+)Ensembl
GRCm38.p6 Ensembl4151,933,734 - 151,957,495 (+)Ensembl
Ensembl Acc Id: ENSMUST00000138738
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4152,054,272 - 152,055,996 (+)Ensembl
GRCm38.p6 Ensembl4151,969,815 - 151,971,539 (+)Ensembl
Ensembl Acc Id: ENSMUST00000139069   ⟹   ENSMUSP00000119604
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4152,018,201 - 152,065,679 (+)Ensembl
GRCm38.p6 Ensembl4151,933,744 - 151,981,222 (+)Ensembl
Ensembl Acc Id: ENSMUST00000139555
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4152,018,188 - 152,061,141 (+)Ensembl
GRCm38.p6 Ensembl4151,933,731 - 151,976,684 (+)Ensembl
Ensembl Acc Id: ENSMUST00000142198
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4152,052,295 - 152,058,741 (+)Ensembl
GRCm38.p6 Ensembl4151,967,838 - 151,974,284 (+)Ensembl
Ensembl Acc Id: ENSMUST00000147625   ⟹   ENSMUSP00000122140
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4152,030,789 - 152,053,073 (+)Ensembl
GRCm38.p6 Ensembl4151,946,332 - 151,968,616 (+)Ensembl
Ensembl Acc Id: ENSMUST00000148048
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4152,054,203 - 152,061,502 (+)Ensembl
GRCm38.p6 Ensembl4151,969,746 - 151,977,045 (+)Ensembl
Ensembl Acc Id: ENSMUST00000149337
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4152,063,441 - 152,065,193 (+)Ensembl
GRCm38.p6 Ensembl4151,978,984 - 151,980,736 (+)Ensembl
RefSeq Acc Id: NM_172704   ⟹   NP_766292
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394152,018,177 - 152,066,416 (+)NCBI
GRCm384151,933,720 - 151,981,959 (+)NCBI
MGSCv374151,307,829 - 151,356,068 (+)RGD
Celera4154,218,847 - 154,266,983 (+)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_030253511   ⟹   XP_030109371
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394152,055,416 - 152,066,412 (+)NCBI
GRCm384151,970,958 - 151,981,955 (+)NCBI
Sequence:
RefSeq Acc Id: NP_766292   ⟸   NM_172704
- UniProtKB: Q5U458 (UniProtKB/Swiss-Prot),   Q8C1Z4 (UniProtKB/Swiss-Prot),   Q8BP83 (UniProtKB/Swiss-Prot),   A2A8C9 (UniProtKB/Swiss-Prot),   Q8C6U5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030109371   ⟸   XM_030253511
- Peptide Label: isoform X1
Ensembl Acc Id: ENSMUSP00000119604   ⟸   ENSMUST00000139069
Ensembl Acc Id: ENSMUSP00000122140   ⟸   ENSMUST00000147625
Ensembl Acc Id: ENSMUSP00000051643   ⟸   ENSMUST00000062904
Protein Domains
J

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5U458-F1-model_v2 AlphaFold Q5U458 1-559 view protein structure

Promoters
RGD ID:6835151
Promoter ID:MM_KWN:40980
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   ES_Cell,   MEF_B4
Transcripts:ENSMUST00000103200,   ENSMUST00000105666,   OTTMUST00000024140,   OTTMUST00000024142,   OTTMUST00000024143,   OTTMUST00000085399
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364151,307,726 - 151,308,226 (+)MPROMDB
RGD ID:6835152
Promoter ID:MM_KWN:40983
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000085400
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364151,342,096 - 151,342,596 (+)MPROMDB
RGD ID:6835153
Promoter ID:MM_KWN:40984
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:OTTMUST00000085401,   OTTMUST00000085402
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364151,342,656 - 151,343,156 (+)MPROMDB
RGD ID:6835154
Promoter ID:MM_KWN:40985
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   Brain,   Kidney,   Liver,   Lung
Transcripts:OTTMUST00000085403,   OTTMUST00000085404
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364151,352,296 - 151,354,047 (+)MPROMDB
RGD ID:6885638
Promoter ID:EPDNEW_M6270
Type:multiple initiation site
Name:Dnajc11_1
Description:Mus musculus DnaJ heat shock protein family member C11 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384151,933,737 - 151,933,797EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2443386 AgrOrtholog
Ensembl Genes ENSMUSG00000039768 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000062904 ENTREZGENE
  ENSMUST00000062904.11 UniProtKB/Swiss-Prot
  ENSMUST00000139069.8 UniProtKB/TrEMBL
  ENSMUST00000147625.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.110 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro DnaJ-like_C11_C UniProtKB/Swiss-Prot
  DnaJ_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DnaJ_domain_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DNAJC11-like_beta-barrel UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  J_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Mito_inner_membrane_organizer UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:230935 UniProtKB/Swiss-Prot
MGD MGI:2443386 ENTREZGENE
NCBI Gene 230935 ENTREZGENE
PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 11 UniProtKB/Swiss-Prot
  DNAJ HOMOLOG SUBFAMILY C MEMBER 11 UniProtKB/Swiss-Prot
  DNAJ HOMOLOG SUBFAMILY C MEMBER 11 UniProtKB/TrEMBL
  DNAJ HOMOLOG SUBFAMILY C MEMBER 11 UniProtKB/TrEMBL
Pfam DnaJ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DNAJC11_beta-barrel UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DUF3395 UniProtKB/Swiss-Prot
PhenoGen Dnajc11 PhenoGen
PRINTS JDOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE DNAJ_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DNAJ_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART DnaJ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46565 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2A8C9 ENTREZGENE
  A2A8D1_MOUSE UniProtKB/TrEMBL
  DJC11_MOUSE UniProtKB/Swiss-Prot
  E9Q8B3_MOUSE UniProtKB/TrEMBL
  Q5U458 ENTREZGENE
  Q8BP83 ENTREZGENE
  Q8C1Z4 ENTREZGENE
  Q8C6U5 ENTREZGENE
UniProt Secondary A2A8C9 UniProtKB/Swiss-Prot
  Q8BP83 UniProtKB/Swiss-Prot
  Q8C1Z4 UniProtKB/Swiss-Prot
  Q8C6U5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-22 Dnajc11  DnaJ heat shock protein family (Hsp40) member C11    DnaJ (Hsp40) homolog, subfamily C, member 11  Symbol and/or name change 5135510 APPROVED