ZMYND12 (zinc finger MYND-type containing 12) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: ZMYND12 (zinc finger MYND-type containing 12) Homo sapiens
Analyze
Symbol: ZMYND12
Name: zinc finger MYND-type containing 12
RGD ID: 1316209
HGNC Page HGNC:21192
Description: Predicted to enable zinc ion binding activity. Involved in sperm axoneme assembly. Located in sperm flagellum.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: DKFZp434N2435; zinc finger MYND domain-containing protein 12; zinc finger, MYND domain containing 12; zinc finger, MYND-type containing 12
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38142,430,329 - 42,456,022 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl142,430,329 - 42,456,253 (-)EnsemblGRCh38hg38GRCh38
GRCh37142,896,000 - 42,921,693 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36142,668,681 - 42,694,514 (-)NCBINCBI36Build 36hg18NCBI36
Build 34142,565,187 - 42,591,020NCBI
Celera141,177,939 - 41,203,877 (-)NCBICelera
Cytogenetic Map1p34.2NCBI
HuRef141,016,081 - 41,042,045 (-)NCBIHuRef
CHM1_1143,012,843 - 43,038,777 (-)NCBICHM1_1
T2T-CHM13v2.0142,300,691 - 42,326,384 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11230166   PMID:11256614   PMID:12477932   PMID:14702039   PMID:15489334   PMID:16710414   PMID:32296183   PMID:32814053   PMID:33961781   PMID:37934199  


Genomics

Comparative Map Data
ZMYND12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38142,430,329 - 42,456,022 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl142,430,329 - 42,456,253 (-)EnsemblGRCh38hg38GRCh38
GRCh37142,896,000 - 42,921,693 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36142,668,681 - 42,694,514 (-)NCBINCBI36Build 36hg18NCBI36
Build 34142,565,187 - 42,591,020NCBI
Celera141,177,939 - 41,203,877 (-)NCBICelera
Cytogenetic Map1p34.2NCBI
HuRef141,016,081 - 41,042,045 (-)NCBIHuRef
CHM1_1143,012,843 - 43,038,777 (-)NCBICHM1_1
T2T-CHM13v2.0142,300,691 - 42,326,384 (-)NCBIT2T-CHM13v2.0
Zmynd12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394119,279,881 - 119,311,096 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4119,280,011 - 119,324,641 (+)EnsemblGRCm39 Ensembl
GRCm384119,422,611 - 119,453,899 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4119,422,814 - 119,467,444 (+)EnsemblGRCm38mm10GRCm38
MGSCv374119,095,289 - 119,126,504 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364118,920,805 - 118,951,831 (+)NCBIMGSCv36mm8
Celera4118,153,890 - 118,185,131 (+)NCBICelera
Cytogenetic Map4D2.1NCBI
cM Map455.38NCBI
Zmynd12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85138,312,257 - 138,345,269 (+)NCBIGRCr8
mRatBN7.25133,026,917 - 133,059,985 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5133,027,009 - 133,059,995 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5135,755,501 - 135,788,402 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05137,511,957 - 137,544,857 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05137,532,567 - 137,565,466 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05138,470,165 - 138,505,928 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5138,470,069 - 138,505,556 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05142,280,300 - 142,312,937 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45140,012,776 - 140,046,983 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15140,017,980 - 140,052,017 (+)NCBI
Celera5131,550,965 - 131,583,612 (+)NCBICelera
Cytogenetic Map5q36NCBI
Zmynd12
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555372,035,644 - 2,080,589 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555372,021,347 - 2,087,527 (-)NCBIChiLan1.0ChiLan1.0
ZMYND12
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21184,355,417 - 184,387,728 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11183,497,096 - 183,525,030 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0141,725,736 - 41,756,324 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1143,110,204 - 43,136,487 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl143,110,890 - 43,136,487 (-)Ensemblpanpan1.1panPan2
ZMYND12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.115817,339 - 842,089 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl15817,384 - 842,087 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha151,071,724 - 1,096,911 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.015898,497 - 923,697 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl15898,980 - 923,695 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.115807,731 - 832,920 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.015869,260 - 894,441 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.015884,371 - 909,562 (+)NCBIUU_Cfam_GSD_1.0
Zmynd12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505858,014,931 - 58,042,546 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647423,838,327 - 23,866,964 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647423,839,713 - 23,867,222 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZMYND12
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6168,877,249 - 168,902,741 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16168,877,247 - 168,902,705 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26156,366,596 - 156,392,453 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZMYND12
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12090,473,006 - 90,498,958 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2090,473,442 - 90,498,568 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603326,408,724 - 26,435,856 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zmynd12
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248921,735,228 - 1,790,767 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248921,733,891 - 1,790,910 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ZMYND12
24 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 1p34.2-34.1(chr1:40693289-44514104)x1 copy number loss See cases [RCV000050706] Chr1:40693289..44514104 [GRCh38]
Chr1:41158961..44979776 [GRCh37]
Chr1:40931548..44752363 [NCBI36]
Chr1:1p34.2-34.1
pathogenic
GRCh38/hg38 1p34.3-33(chr1:39479787-47688131)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051817]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051817]|See cases [RCV000051817] Chr1:39479787..47688131 [GRCh38]
Chr1:39945459..48153803 [GRCh37]
Chr1:39718046..47926390 [NCBI36]
Chr1:1p34.3-33
pathogenic
GRCh38/hg38 1p34.3-34.1(chr1:38222737-45636176)x3 copy number gain See cases [RCV000051803] Chr1:38222737..45636176 [GRCh38]
Chr1:38688409..46101848 [GRCh37]
Chr1:38460996..45874435 [NCBI36]
Chr1:1p34.3-34.1
pathogenic
GRCh38/hg38 1p34.2-34.1(chr1:40462415-44668040)x1 copy number loss See cases [RCV000053837] Chr1:40462415..44668040 [GRCh38]
Chr1:40928087..45133712 [GRCh37]
Chr1:40700674..44906299 [NCBI36]
Chr1:1p34.2-34.1
pathogenic
NM_024664.3(PPCS):c.385G>T (p.Ala129Ser) single nucleotide variant Malignant melanoma [RCV000064774] Chr1:42456950 [GRCh38]
Chr1:42922621 [GRCh37]
Chr1:42695208 [NCBI36]
Chr1:1p34.2
not provided
NM_001077447.2(PPCS):c.127C>T (p.Pro43Ser) single nucleotide variant Malignant melanoma [RCV000064775] Chr1:42459636 [GRCh38]
Chr1:42925307 [GRCh37]
Chr1:42697894 [NCBI36]
Chr1:1p34.2
not provided
NM_001077447.2(PPCS):c.128C>A (p.Pro43His) single nucleotide variant Malignant melanoma [RCV000064776] Chr1:42459637 [GRCh38]
Chr1:42925308 [GRCh37]
Chr1:42697895 [NCBI36]
Chr1:1p34.2
not provided
GRCh37/hg19 1p34.2(chr1:41343608-43121507)x1 copy number loss See cases [RCV000234876] Chr1:41343608..43121507 [GRCh37]
Chr1:1p34.2
likely pathogenic
GRCh38/hg38 1p34.2(chr1:40834404-43123071)x1 copy number loss See cases [RCV000142267] Chr1:40834404..43123071 [GRCh38]
Chr1:41300076..43588742 [GRCh37]
Chr1:41072663..43361329 [NCBI36]
Chr1:1p34.2
pathogenic
GRCh37/hg19 1p36.12-12(chr1:20608823-120546301)x3 copy number loss not provided [RCV000762767] Chr1:20608823..120546301 [GRCh37]
Chr1:1p36.12-12
likely benign
GRCh37/hg19 1p34.2-34.1(chr1:42914303-45001279)x1 copy number loss See cases [RCV000446029] Chr1:42914303..45001279 [GRCh37]
Chr1:1p34.2-34.1
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684)x3 copy number gain See cases [RCV000510383] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684) copy number gain See cases [RCV000510926] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44
pathogenic
NM_032257.5(ZMYND12):c.963G>T (p.Met321Ile) single nucleotide variant not specified [RCV004299054] Chr1:42433155 [GRCh38]
Chr1:42898826 [GRCh37]
Chr1:1p34.2
uncertain significance
NM_032257.5(ZMYND12):c.430G>T (p.Gly144Cys) single nucleotide variant not specified [RCV004329639] Chr1:42440020 [GRCh38]
Chr1:42905691 [GRCh37]
Chr1:1p34.2
uncertain significance
NM_032257.5(ZMYND12):c.380T>C (p.Val127Ala) single nucleotide variant not specified [RCV004332456] Chr1:42448511 [GRCh38]
Chr1:42914182 [GRCh37]
Chr1:1p34.2
uncertain significance
NC_000001.10:g.(?_33241563)_(46663513_?)dup duplication Charcot-Marie-Tooth disease dominant intermediate C [RCV000708276] Chr1:33241563..46663513 [GRCh37]
Chr1:1p35.1-34.1
uncertain significance
GRCh37/hg19 1p36.33-q44(chr1:47851-249228449)x3 copy number gain not provided [RCV000736295] Chr1:47851..249228449 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:82154-249218992)x3 copy number gain not provided [RCV000736305] Chr1:82154..249218992 [GRCh37]
Chr1:1p36.33-q44
pathogenic
NM_032257.5(ZMYND12):c.86C>T (p.Ala29Val) single nucleotide variant not specified [RCV004304831] Chr1:42455912 [GRCh38]
Chr1:42921583 [GRCh37]
Chr1:1p34.2
uncertain significance
GRCh37/hg19 1p36.22-21.1(chr1:103343285-103455144)x3 copy number gain Global developmental delay [RCV000787285] Chr1:103343285..103455144 [GRCh37]
Chr1:1p36.22-21.1
uncertain significance
NM_032257.5(ZMYND12):c.45C>T (p.Leu15=) single nucleotide variant not provided [RCV001598310] Chr1:42455953 [GRCh38]
Chr1:42921624 [GRCh37]
Chr1:1p34.2
benign
NC_000001.10:g.(?_33241563)_(46663513_?)dup duplication Charcot-Marie-Tooth disease, dominant intermediate C [RCV001308684] Chr1:33241563..46663513 [GRCh37]
Chr1:1p35.1-34.1
uncertain significance
GRCh37/hg19 1p35.1-33(chr1:33285582-47891811) copy number gain not specified [RCV002052781] Chr1:33285582..47891811 [GRCh37]
Chr1:1p35.1-33
pathogenic
NM_032257.5(ZMYND12):c.347G>A (p.Arg116His) single nucleotide variant not specified [RCV004085526] Chr1:42448544 [GRCh38]
Chr1:42914215 [GRCh37]
Chr1:1p34.2
uncertain significance
NM_032257.5(ZMYND12):c.500G>A (p.Ser167Asn) single nucleotide variant not specified [RCV004117530] Chr1:42439950 [GRCh38]
Chr1:42905621 [GRCh37]
Chr1:1p34.2
uncertain significance
NM_032257.5(ZMYND12):c.135C>G (p.Asp45Glu) single nucleotide variant not specified [RCV004172802] Chr1:42450035 [GRCh38]
Chr1:42915706 [GRCh37]
Chr1:1p34.2
uncertain significance
NM_032257.5(ZMYND12):c.940G>T (p.Val314Phe) single nucleotide variant not specified [RCV004120835] Chr1:42433178 [GRCh38]
Chr1:42898849 [GRCh37]
Chr1:1p34.2
uncertain significance
NM_032257.5(ZMYND12):c.527G>A (p.Arg176Gln) single nucleotide variant not specified [RCV004239529] Chr1:42439923 [GRCh38]
Chr1:42905594 [GRCh37]
Chr1:1p34.2
uncertain significance
NM_032257.5(ZMYND12):c.953A>C (p.Tyr318Ser) single nucleotide variant not specified [RCV004239590] Chr1:42433165 [GRCh38]
Chr1:42898836 [GRCh37]
Chr1:1p34.2
uncertain significance
NM_032257.5(ZMYND12):c.346C>T (p.Arg116Cys) single nucleotide variant not specified [RCV004159504] Chr1:42448545 [GRCh38]
Chr1:42914216 [GRCh37]
Chr1:1p34.2
uncertain significance
NM_032257.5(ZMYND12):c.496T>G (p.Cys166Gly) single nucleotide variant not specified [RCV004085090] Chr1:42439954 [GRCh38]
Chr1:42905625 [GRCh37]
Chr1:1p34.2
uncertain significance
NM_032257.5(ZMYND12):c.917C>A (p.Thr306Asn) single nucleotide variant not specified [RCV004209099] Chr1:42433201 [GRCh38]
Chr1:42898872 [GRCh37]
Chr1:1p34.2
uncertain significance
NM_032257.5(ZMYND12):c.574C>T (p.Arg192Cys) single nucleotide variant not specified [RCV004224779] Chr1:42439876 [GRCh38]
Chr1:42905547 [GRCh37]
Chr1:1p34.2
uncertain significance
NM_032257.5(ZMYND12):c.218G>A (p.Arg73Gln) single nucleotide variant not specified [RCV004256261] Chr1:42449952 [GRCh38]
Chr1:42915623 [GRCh37]
Chr1:1p34.2
uncertain significance
NM_032257.5(ZMYND12):c.613G>A (p.Ala205Thr) single nucleotide variant not specified [RCV004348714] Chr1:42436525 [GRCh38]
Chr1:42902196 [GRCh37]
Chr1:1p34.2
uncertain significance
NM_032257.5(ZMYND12):c.185C>A (p.Thr62Asn) single nucleotide variant not specified [RCV004360093] Chr1:42449985 [GRCh38]
Chr1:42915656 [GRCh37]
Chr1:1p34.2
uncertain significance
Single allele inversion Bilateral polymicrogyria [RCV003459046] Chr1:33246132..61045156 [GRCh38]
Chr1:1p35.1-31.3
likely pathogenic
GRCh38/hg38 1p34.2(chr1:42278946-43598390) copy number loss Epilepsy syndrome [RCV003986075] Chr1:42278946..43598390 [GRCh38]
Chr1:1p34.2
pathogenic
NM_032257.5(ZMYND12):c.153G>C (p.Glu51Asp) single nucleotide variant not specified [RCV004489134] Chr1:42450017 [GRCh38]
Chr1:42915688 [GRCh37]
Chr1:1p34.2
uncertain significance
NM_032257.5(ZMYND12):c.195C>T (p.Pro65=) single nucleotide variant not specified [RCV004489135] Chr1:42449975 [GRCh38]
Chr1:42915646 [GRCh37]
Chr1:1p34.2
likely benign
NM_032257.5(ZMYND12):c.249G>A (p.Arg83=) single nucleotide variant not specified [RCV004489136] Chr1:42449921 [GRCh38]
Chr1:42915592 [GRCh37]
Chr1:1p34.2
likely benign
NM_032257.5(ZMYND12):c.26T>C (p.Val9Ala) single nucleotide variant not specified [RCV004489137] Chr1:42455972 [GRCh38]
Chr1:42921643 [GRCh37]
Chr1:1p34.2
uncertain significance
NM_032257.5(ZMYND12):c.460T>A (p.Phe154Ile) single nucleotide variant not specified [RCV004489139] Chr1:42439990 [GRCh38]
Chr1:42905661 [GRCh37]
Chr1:1p34.2
uncertain significance
NM_032257.5(ZMYND12):c.919A>G (p.Ile307Val) single nucleotide variant not specified [RCV004885809] Chr1:42433199 [GRCh38]
Chr1:42898870 [GRCh37]
Chr1:1p34.2
likely benign
NM_032257.5(ZMYND12):c.466G>A (p.Ala156Thr) single nucleotide variant not specified [RCV004885815] Chr1:42439984 [GRCh38]
Chr1:42905655 [GRCh37]
Chr1:1p34.2
uncertain significance
NM_032257.5(ZMYND12):c.234G>A (p.Gln78=) single nucleotide variant not specified [RCV004885814] Chr1:42449936 [GRCh38]
Chr1:42915607 [GRCh37]
Chr1:1p34.2
likely benign
NM_032257.5(ZMYND12):c.608G>C (p.Ser203Thr) single nucleotide variant not specified [RCV004885817] Chr1:42436530 [GRCh38]
Chr1:42902201 [GRCh37]
Chr1:1p34.2
uncertain significance
NM_032257.5(ZMYND12):c.187T>C (p.Ser63Pro) single nucleotide variant not specified [RCV004885810] Chr1:42449983 [GRCh38]
Chr1:42915654 [GRCh37]
Chr1:1p34.2
uncertain significance
NM_032257.5(ZMYND12):c.566A>G (p.Glu189Gly) single nucleotide variant not specified [RCV004885816] Chr1:42439884 [GRCh38]
Chr1:42905555 [GRCh37]
Chr1:1p34.2
uncertain significance
NM_032257.5(ZMYND12):c.549A>G (p.Ile183Met) single nucleotide variant not specified [RCV004885811] Chr1:42439901 [GRCh38]
Chr1:42905572 [GRCh37]
Chr1:1p34.2
likely benign
NM_032257.5(ZMYND12):c.664A>G (p.Asn222Asp) single nucleotide variant not specified [RCV004885812] Chr1:42436474 [GRCh38]
Chr1:42902145 [GRCh37]
Chr1:1p34.2
uncertain significance
NM_032257.5(ZMYND12):c.257A>G (p.Tyr86Cys) single nucleotide variant not specified [RCV004885813] Chr1:42448634 [GRCh38]
Chr1:42914305 [GRCh37]
Chr1:1p34.2
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:698
Count of miRNA genes:423
Interacting mature miRNAs:451
Transcripts:ENST00000372565, ENST00000433602, ENST00000461083, ENST00000475426
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
597172541GWAS1268615_Hprotein measurement QTL GWAS1268615 (human)2e-40protein measurement14243768942437690Human

Markers in Region
RH99085  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37142,896,267 - 42,896,389UniSTSGRCh37
Build 36142,668,854 - 42,668,976RGDNCBI36
Celera141,178,206 - 41,178,328RGD
Cytogenetic Map1p34.2UniSTS
HuRef141,016,348 - 41,016,470UniSTS
GeneMap99-GB4 RH Map1133.84UniSTS
SHGC-155430  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37142,913,532 - 42,913,870UniSTSGRCh37
Build 36142,686,119 - 42,686,457RGDNCBI36
Celera141,195,471 - 41,195,809RGD
Cytogenetic Map1p34.2UniSTS
HuRef141,033,639 - 41,033,977UniSTS
TNG Radiation Hybrid Map120802.0UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2424 2785 2241 4945 1721 2328 5 618 1888 460 2263 7215 6396 44 3712 843 1730 1599 174 1

Sequence


Ensembl Acc Id: ENST00000372565   ⟹   ENSP00000361646
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl142,430,329 - 42,456,022 (-)Ensembl
Ensembl Acc Id: ENST00000461083   ⟹   ENSP00000482602
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl142,436,421 - 42,456,011 (-)Ensembl
Ensembl Acc Id: ENST00000475426
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl142,432,860 - 42,435,522 (-)Ensembl
Ensembl Acc Id: ENST00000611861   ⟹   ENSP00000478789
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl142,430,415 - 42,456,253 (-)Ensembl
RefSeq Acc Id: NM_001146192   ⟹   NP_001139664
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38142,430,329 - 42,456,022 (-)NCBI
GRCh37142,896,000 - 42,921,938 (-)RGD
Celera141,177,939 - 41,203,877 (-)RGD
HuRef141,016,081 - 41,042,045 (-)ENTREZGENE
CHM1_1143,012,843 - 43,038,777 (-)NCBI
T2T-CHM13v2.0142,300,691 - 42,326,384 (-)NCBI
Sequence:
RefSeq Acc Id: NM_032257   ⟹   NP_115633
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38142,430,329 - 42,456,022 (-)NCBI
GRCh37142,896,000 - 42,921,938 (-)RGD
Build 36142,668,681 - 42,694,514 (-)NCBI Archive
Celera141,177,939 - 41,203,877 (-)RGD
HuRef141,016,081 - 41,042,045 (-)ENTREZGENE
CHM1_1143,012,843 - 43,038,777 (-)NCBI
T2T-CHM13v2.0142,300,691 - 42,326,384 (-)NCBI
Sequence:
RefSeq Acc Id: NP_115633   ⟸   NM_032257
- Peptide Label: isoform 1
- UniProtKB: Q8TC87 (UniProtKB/Swiss-Prot),   Q5VUS6 (UniProtKB/Swiss-Prot),   Q96M51 (UniProtKB/Swiss-Prot),   Q9H0C1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001139664   ⟸   NM_001146192
- Peptide Label: isoform 2
- UniProtKB: B4DX70 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000361646   ⟸   ENST00000372565
Ensembl Acc Id: ENSP00000478789   ⟸   ENST00000611861
Ensembl Acc Id: ENSP00000482602   ⟸   ENST00000461083
Protein Domains
MYND-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9H0C1-F1-model_v2 AlphaFold Q9H0C1 1-365 view protein structure

Promoters
RGD ID:6855172
Promoter ID:EPDNEW_H751
Type:initiation region
Name:ZMYND12_1
Description:zinc finger MYND-type containing 12
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H752  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38142,456,256 - 42,456,316EPDNEW
RGD ID:6855174
Promoter ID:EPDNEW_H752
Type:initiation region
Name:ZMYND12_2
Description:zinc finger MYND-type containing 12
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H751  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38142,456,448 - 42,456,508EPDNEW
RGD ID:6787267
Promoter ID:HG_KWN:2283
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour
Transcripts:NM_001146192,   OTTHUMT00000019170,   OTTHUMT00000019172
Position:
Human AssemblyChrPosition (strand)Source
Build 36142,694,041 - 42,694,541 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:21192 AgrOrtholog
COSMIC ZMYND12 COSMIC
Ensembl Genes ENSG00000066185 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000372565 ENTREZGENE
  ENST00000372565.8 UniProtKB/Swiss-Prot
  ENST00000461083.1 UniProtKB/TrEMBL
  ENST00000611861.4 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  6.10.140.2220 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000066185 GTEx
HGNC ID HGNC:21192 ENTREZGENE
Human Proteome Map ZMYND12 Human Proteome Map
InterPro TPR-like_helical_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Zinc_finger_MYND_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_MYND UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:84217 UniProtKB/Swiss-Prot
NCBI Gene 84217 ENTREZGENE
PANTHER ZINC FINGER MYND DOMAIN-CONTAINING PROTEIN 12 UniProtKB/Swiss-Prot
  ZINC FINGER MYND DOMAIN-CONTAINING PROTEIN 12 UniProtKB/Swiss-Prot
  ZINC FINGER MYND DOMAIN-CONTAINING PROTEIN 12 UniProtKB/TrEMBL
  ZINC FINGER MYND DOMAIN-CONTAINING PROTEIN 12 UniProtKB/TrEMBL
Pfam zf-MYND UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA134993145 PharmGKB
PROSITE ZF_MYND_1 UniProtKB/Swiss-Prot
  ZF_MYND_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP HIT/MYND zinc finger-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF48452 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A087WUN3_HUMAN UniProtKB/TrEMBL
  A0A087WZE7_HUMAN UniProtKB/TrEMBL
  B4DX70 ENTREZGENE, UniProtKB/TrEMBL
  Q5VUS6 ENTREZGENE
  Q8TC87 ENTREZGENE
  Q96M51 ENTREZGENE
  Q9H0C1 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q5VUS6 UniProtKB/Swiss-Prot
  Q8TC87 UniProtKB/Swiss-Prot
  Q96M51 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-18 ZMYND12  zinc finger MYND-type containing 12    zinc finger, MYND-type containing 12  Symbol and/or name change 5135510 APPROVED