ZMYND12 (zinc finger MYND-type containing 12) - Rat Genome Database

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Gene: ZMYND12 (zinc finger MYND-type containing 12) Sus scrofa
Analyze
Symbol: ZMYND12
Name: zinc finger MYND-type containing 12
RGD ID: 14253565
Description: ENCODES a protein that exhibits metal ion binding (inferred); INVOLVED IN flagellated sperm motility (inferred); sperm axoneme assembly (inferred); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); genetic disease (ortholog); FOUND IN sperm flagellum (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger MYND domain-containing protein 12
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6168,877,249 - 168,902,741 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16168,877,247 - 168,902,705 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26156,366,596 - 156,392,453 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074  


Genomics

Comparative Map Data
ZMYND12
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6168,877,249 - 168,902,741 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16168,877,247 - 168,902,705 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26156,366,596 - 156,392,453 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZMYND12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38142,430,329 - 42,456,022 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl142,430,329 - 42,456,253 (-)EnsemblGRCh38hg38GRCh38
GRCh37142,896,000 - 42,921,693 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36142,668,681 - 42,694,514 (-)NCBINCBI36Build 36hg18NCBI36
Build 34142,565,187 - 42,591,020NCBI
Celera141,177,939 - 41,203,877 (-)NCBICelera
Cytogenetic Map1p34.2NCBI
HuRef141,016,081 - 41,042,045 (-)NCBIHuRef
CHM1_1143,012,843 - 43,038,777 (-)NCBICHM1_1
T2T-CHM13v2.0142,300,691 - 42,326,384 (-)NCBIT2T-CHM13v2.0
Zmynd12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394119,279,881 - 119,311,096 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4119,280,011 - 119,324,641 (+)EnsemblGRCm39 Ensembl
GRCm384119,422,611 - 119,453,899 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4119,422,814 - 119,467,444 (+)EnsemblGRCm38mm10GRCm38
MGSCv374119,095,289 - 119,126,504 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364118,920,805 - 118,951,831 (+)NCBIMGSCv36mm8
Celera4118,153,890 - 118,185,131 (+)NCBICelera
Cytogenetic Map4D2.1NCBI
cM Map455.38NCBI
Zmynd12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85138,312,257 - 138,345,269 (+)NCBIGRCr8
mRatBN7.25133,026,917 - 133,059,985 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5133,027,009 - 133,059,995 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5135,755,501 - 135,788,402 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05137,511,957 - 137,544,857 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05137,532,567 - 137,565,466 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05138,470,165 - 138,505,928 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5138,470,069 - 138,505,556 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05142,280,300 - 142,312,937 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45140,012,776 - 140,046,983 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15140,017,980 - 140,052,017 (+)NCBI
Celera5131,550,965 - 131,583,612 (+)NCBICelera
Cytogenetic Map5q36NCBI
Zmynd12
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555372,035,644 - 2,080,589 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555372,021,347 - 2,087,527 (-)NCBIChiLan1.0ChiLan1.0
ZMYND12
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21184,355,417 - 184,387,728 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11183,497,096 - 183,525,030 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0141,725,736 - 41,756,324 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1143,110,204 - 43,136,487 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl143,110,890 - 43,136,487 (-)Ensemblpanpan1.1panPan2
ZMYND12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.115817,339 - 842,089 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl15817,384 - 842,087 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha151,071,724 - 1,096,911 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.015898,497 - 923,697 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl15898,980 - 923,695 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.115807,731 - 832,920 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.015869,260 - 894,441 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.015884,371 - 909,562 (+)NCBIUU_Cfam_GSD_1.0
Zmynd12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505858,014,931 - 58,042,546 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647423,838,327 - 23,866,964 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647423,839,713 - 23,867,222 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZMYND12
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12090,473,006 - 90,498,958 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2090,473,442 - 90,498,568 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603326,408,724 - 26,435,856 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zmynd12
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248921,735,228 - 1,790,767 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248921,733,891 - 1,790,910 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ZMYND12
1240 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system musculoskeletal system nervous system renal system reproductive system
High
Medium
Low 10 1
Below cutoff 3 3 2 11 2

Sequence


RefSeq Acc Id: ENSSSCT00000004388   ⟹   ENSSSCP00000004288
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl6168,877,249 - 168,902,741 (+)Ensembl
RefSeq Acc Id: XM_003128102   ⟹   XP_003128150
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.16168,877,247 - 168,902,705 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005665516   ⟹   XP_005665573
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.16168,877,247 - 168,899,594 (+)NCBI
Sequence:
RefSeq Acc Id: XP_003128150   ⟸   XM_003128102
- Peptide Label: isoform X1
- UniProtKB: A0A4X1W854 (UniProtKB/TrEMBL),   F1SF92 (UniProtKB/TrEMBL),   A0A8D1XQ65 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005665573   ⟸   XM_005665516
- Peptide Label: isoform X2
- UniProtKB: A0A4X1W5Y0 (UniProtKB/TrEMBL),   A0A8D1XJY1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000004288   ⟸   ENSSSCT00000004388
Protein Domains
MYND-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000003967 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015070465 UniProtKB/TrEMBL
  ENSSSCG00025011735 UniProtKB/TrEMBL
  ENSSSCG00030029368 UniProtKB/TrEMBL
  ENSSSCG00035073132 UniProtKB/TrEMBL
  ENSSSCG00040006834 UniProtKB/TrEMBL
  ENSSSCG00045007424 UniProtKB/TrEMBL
  ENSSSCG00050019869 UniProtKB/TrEMBL
  ENSSSCG00055013143 UniProtKB/TrEMBL
  ENSSSCG00065012703 UniProtKB/TrEMBL
  ENSSSCG00070029211 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000004388 ENTREZGENE
  ENSSSCT00000004388.4 UniProtKB/TrEMBL
  ENSSSCT00015094427.1 UniProtKB/TrEMBL
  ENSSSCT00015094572.1 UniProtKB/TrEMBL
  ENSSSCT00025015480.1 UniProtKB/TrEMBL
  ENSSSCT00030040867.1 UniProtKB/TrEMBL
  ENSSSCT00030040900.1 UniProtKB/TrEMBL
  ENSSSCT00035099042.1 UniProtKB/TrEMBL
  ENSSSCT00035099054.1 UniProtKB/TrEMBL
  ENSSSCT00040008980.1 UniProtKB/TrEMBL
  ENSSSCT00040009008.1 UniProtKB/TrEMBL
  ENSSSCT00045012341.1 UniProtKB/TrEMBL
  ENSSSCT00045012377.1 UniProtKB/TrEMBL
  ENSSSCT00050026803.1 UniProtKB/TrEMBL
  ENSSSCT00050026827.1 UniProtKB/TrEMBL
  ENSSSCT00055025859.1 UniProtKB/TrEMBL
  ENSSSCT00055025908.1 UniProtKB/TrEMBL
  ENSSSCT00065016906.1 UniProtKB/TrEMBL
  ENSSSCT00065016927.1 UniProtKB/TrEMBL
  ENSSSCT00070058625.1 UniProtKB/TrEMBL
  ENSSSCT00070058626.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
  6.10.140.2220 UniProtKB/TrEMBL
InterPro TPR-like_helical_dom_sf UniProtKB/TrEMBL
  Znf_MYND UniProtKB/TrEMBL
KEGG Report ssc:100524028 UniProtKB/TrEMBL
NCBI Gene ZMYND12 ENTREZGENE
PANTHER ZINC FINGER MYND DOMAIN-CONTAINING PROTEIN 12 UniProtKB/TrEMBL
  ZINC FINGER MYND DOMAIN-CONTAINING PROTEIN 12 UniProtKB/TrEMBL
Pfam zf-MYND UniProtKB/TrEMBL
PROSITE ZF_MYND_2 UniProtKB/TrEMBL
Superfamily-SCOP HIT/MYND zinc finger-like UniProtKB/TrEMBL
  SSF48452 UniProtKB/TrEMBL
UniProt A0A4X1W5Y0 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1W854 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0W9Y0_PIG UniProtKB/TrEMBL
  A0A8D1GVW8_PIG UniProtKB/TrEMBL
  A0A8D1XJY1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1XQ65 ENTREZGENE, UniProtKB/TrEMBL
  F1SF92 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:95187 ENTREZGENE