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Gene: Ttc29 (tetratricopeptide repeat domain 29) Mus musculus

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Symbol:

Ttc29

Name:

tetratricopeptide repeat domain 29

RGD ID:

1315913

MGI Page

MGI

Description:

Involved in cilium movement. Located in sperm flagellum. Is expressed in 4th ventricle lateral recess and lateral ventricle choroid plexus. Human ortholog(s) of this gene implicated in spermatogenic failure 42. Orthologous to human TTC29 (tetratricopeptide repeat domain 29).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

1700031F13Rik; tetratricopeptide repeat protein 29; TPR repeat protein 29

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TTC29 (tetratricopeptide repeat domain 29)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Ttc29 (tetratricopeptide repeat domain 29)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ttc29 (tetratricopeptide repeat domain 29)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TTC29 (tetratricopeptide repeat domain 29)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TTC29 (tetratricopeptide repeat domain 29)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ttc29 (tetratricopeptide repeat domain 29)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TTC29 (tetratricopeptide repeat domain 29)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TTC29 (tetratricopeptide repeat domain 29)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ttc29 (tetratricopeptide repeat domain 29)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Ttc29 (tetratricopeptide repeat domain 29)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	TTC29 (tetratricopeptide repeat domain 29)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ttc29 (tetratricopeptide repeat domain 29)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Xenopus tropicalis (tropical clawed frog):	ttc29	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	78,939,911 - 79,120,955 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	78,939,926 - 79,120,955 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	78,213,282 - 78,394,326 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	78,213,297 - 78,394,326 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	80,737,241 - 80,918,225 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	81,109,414 - 81,290,398 (+)	NCBI		MGSCv36	mm8
Celera	8	82,486,892 - 82,670,357 (+)	NCBI		Celera
Cytogenetic Map	8	C1	NCBI
cM Map	8	36.86	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ttc29	Mouse	methylmalonic acidemia cblA type		ISO	TTC29 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Methylmalonic aciduria and cblA type	ClinVar	PMID:15523652 more ...
Ttc29	Mouse	spermatogenic failure 42		ISO	TTC29 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Spermatogenic failure 42	ClinVar	PMID:31735292 and PMID:31735294
Ttc29	Mouse	spermatogenic failure 5		ISO	TTC29 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Male infertility with spermatogenesis disorder	ClinVar	PMID:25741868 more ...

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ttc29	Mouse	spermatogenic failure 42		ISO	TTC29 (Homo sapiens)	7240710		OMIM

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ttc29	Mouse	2,4-dibromophenyl 2,4,5-tribromophenyl ether	increases expression	ISO	TTC29 (Homo sapiens)	6480464	2 more ...	CTD	PMID:26705709
Ttc29	Mouse	4,4'-sulfonyldiphenol	increases expression	EXP		6480464	bisphenol S results in increased expression of TTC29 mRNA	CTD	PMID:30951980
Ttc29	Mouse	6-propyl-2-thiouracil	increases expression	ISO	Ttc29 (Rattus norvegicus)	6480464	Propylthiouracil results in increased expression of TTC29 mRNA	CTD	PMID:24780913
Ttc29	Mouse	aflatoxin B1	decreases methylation	ISO	TTC29 (Homo sapiens)	6480464	Aflatoxin B1 results in decreased methylation of TTC29 gene	CTD	PMID:27153756
Ttc29	Mouse	atrazine	affects methylation	ISO	Ttc29 (Rattus norvegicus)	6480464	Atrazine affects the methylation of TTC29 gene	CTD	PMID:28931070 and PMID:35440735
Ttc29	Mouse	belinostat	increases expression	ISO	TTC29 (Homo sapiens)	6480464	belinostat results in increased expression of TTC29 mRNA	CTD	PMID:26272509
Ttc29	Mouse	belinostat	multiple interactions	ISO	TTC29 (Homo sapiens)	6480464	[NOG protein co-treated with belinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of TTC29 mRNA	CTD	PMID:27188386
Ttc29	Mouse	benzo[a]pyrene	decreases expression	EXP		6480464	Benzo(a)pyrene results in decreased expression of TTC29 mRNA	CTD	PMID:22228805
Ttc29	Mouse	benzo[a]pyrene	decreases methylation	ISO	TTC29 (Homo sapiens)	6480464	Benzo(a)pyrene results in decreased methylation of TTC29 promoter	CTD	PMID:27901495
Ttc29	Mouse	benzo[a]pyrene	affects methylation	ISO	TTC29 (Homo sapiens)	6480464	Benzo(a)pyrene affects the methylation of TTC29 5' UTR	CTD	PMID:27901495
Ttc29	Mouse	benzo[a]pyrene	increases expression	ISO	TTC29 (Homo sapiens)	6480464	Benzo(a)pyrene results in increased expression of TTC29 mRNA	CTD	PMID:22316170
Ttc29	Mouse	bis(2-ethylhexyl) phthalate	decreases expression	ISO	TTC29 (Homo sapiens)	6480464	Diethylhexyl Phthalate results in decreased expression of TTC29 mRNA	CTD	PMID:31163220
Ttc29	Mouse	bisphenol A	decreases expression	ISO	Ttc29 (Rattus norvegicus)	6480464	bisphenol A results in decreased expression of TTC29 mRNA	CTD	PMID:25181051
Ttc29	Mouse	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of TTC29 mRNA	CTD	PMID:30951980
Ttc29	Mouse	bisphenol A	increases methylation	ISO	Ttc29 (Rattus norvegicus)	6480464	bisphenol A results in increased methylation of TTC29 gene	CTD	PMID:28505145
Ttc29	Mouse	bisphenol F	increases expression	EXP		6480464	bisphenol F results in increased expression of TTC29 mRNA	CTD	PMID:30951980
Ttc29	Mouse	carbamazepine	affects expression	ISO	TTC29 (Homo sapiens)	6480464	Carbamazepine affects the expression of TTC29 mRNA	CTD	PMID:25979313
Ttc29	Mouse	carbon nanotube	decreases expression	EXP		6480464	Nanotubes more ...	CTD	PMID:25554681
Ttc29	Mouse	chloroprene	increases expression	EXP		6480464	Chloroprene results in increased expression of TTC29 mRNA	CTD	PMID:23125180
Ttc29	Mouse	Cuprizon	increases expression	ISO	Ttc29 (Rattus norvegicus)	6480464	Cuprizone results in increased expression of TTC29 mRNA	CTD	PMID:26577399
Ttc29	Mouse	dorsomorphin	multiple interactions	ISO	TTC29 (Homo sapiens)	6480464	[NOG protein co-treated with belinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1 more ...	CTD	PMID:27188386
Ttc29	Mouse	entinostat	multiple interactions	ISO	TTC29 (Homo sapiens)	6480464	[NOG protein co-treated with entinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of TTC29 mRNA	CTD	PMID:27188386
Ttc29	Mouse	methotrexate	increases expression	ISO	TTC29 (Homo sapiens)	6480464	Methotrexate results in increased expression of TTC29 mRNA	CTD	PMID:24449571
Ttc29	Mouse	methylmercury chloride	decreases expression	ISO	TTC29 (Homo sapiens)	6480464	methylmercuric chloride results in decreased expression of TTC29 mRNA	CTD	PMID:28001369
Ttc29	Mouse	panobinostat	multiple interactions	ISO	TTC29 (Homo sapiens)	6480464	[NOG protein co-treated with Panobinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of TTC29 mRNA	CTD	PMID:27188386
Ttc29	Mouse	panobinostat	increases expression	ISO	TTC29 (Homo sapiens)	6480464	panobinostat results in increased expression of TTC29 mRNA	CTD	PMID:26272509
Ttc29	Mouse	pirinixic acid	multiple interactions	ISO	TTC29 (Homo sapiens)	6480464	[pirinixic acid binds to and results in increased activity of PPARA protein] which results in increased expression of TTC29 mRNA	CTD	PMID:19710929
Ttc29	Mouse	progesterone	increases expression	EXP		6480464	Progesterone results in increased expression of TTC29 mRNA	CTD	PMID:22238285
Ttc29	Mouse	SB 431542	multiple interactions	ISO	TTC29 (Homo sapiens)	6480464	[NOG protein co-treated with belinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1 more ...	CTD	PMID:27188386
Ttc29	Mouse	temozolomide	decreases expression	ISO	TTC29 (Homo sapiens)	6480464	Temozolomide results in decreased expression of TTC29 mRNA	CTD	PMID:31758290
Ttc29	Mouse	titanium dioxide	decreases expression	EXP		6480464	titanium dioxide results in decreased expression of TTC29 mRNA	CTD	PMID:23557971 and PMID:35295148
Ttc29	Mouse	trichloroethene	increases expression	ISO	Ttc29 (Rattus norvegicus)	6480464	Trichloroethylene results in increased expression of TTC29 mRNA	CTD	PMID:33387578
Ttc29	Mouse	trichostatin A	increases expression	ISO	TTC29 (Homo sapiens)	6480464	trichostatin A results in increased expression of TTC29 mRNA	CTD	PMID:24935251
Ttc29	Mouse	triclosan	increases expression	ISO	TTC29 (Homo sapiens)	6480464	Triclosan results in increased expression of TTC29 mRNA	CTD	PMID:30510588
Ttc29	Mouse	valproic acid	decreases methylation	ISO	TTC29 (Homo sapiens)	6480464	Valproic Acid results in decreased methylation of TTC29 gene	CTD	PMID:29154799
Ttc29	Mouse	valproic acid	affects expression	ISO	TTC29 (Homo sapiens)	6480464	Valproic Acid affects the expression of TTC29 mRNA	CTD	PMID:25979313
Ttc29	Mouse	valproic acid	increases expression	ISO	TTC29 (Homo sapiens)	6480464	Valproic Acid results in increased expression of TTC29 mRNA	CTD	PMID:23179753 more ...
Ttc29	Mouse	valproic acid	multiple interactions	ISO	TTC29 (Homo sapiens)	6480464	[NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of TTC29 mRNA	CTD	PMID:27188386
Ttc29	Mouse	zoledronic acid	increases expression	ISO	TTC29 (Homo sapiens)	6480464	zoledronic acid results in increased expression of TTC29 mRNA	CTD	PMID:24714768

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ttc29	Mouse	cilium movement	involved_in	IBA	PANTHER:PTN000009788 more ...	2290270		GO_Central	GO_REF:0000033
Ttc29	Mouse	cilium movement	involved_in	ISO	UniProtKB:Q8NA56	2290270		GO_Central	GO_REF:0000119
Ttc29	Mouse	cilium movement	involved_in	IMP		2290270	PMID:31735292 and PMID:31735294	UniProt	PMID:31735292 and PMID:31735294
Ttc29	Mouse	cilium organization	involved_in	ISO	UniProtKB:Q8NA56	2290270		GO_Central	GO_REF:0000119

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ttc29	Mouse	cytoplasm	located_in	IEA	UniProtKB-KW:KW-0963	2290270		UniProt	GO_REF:0000043
Ttc29	Mouse	cytoskeleton	located_in	IEA	UniProtKB-KW:KW-0206	2290270		UniProt	GO_REF:0000043
Ttc29	Mouse	sperm flagellum	located_in	IDA		2290270	PMID:31735292 and PMID:31735294	UniProt	PMID:31735292 and PMID:31735294
Ttc29	Mouse	sperm flagellum	located_in	ISO	UniProtKB:Q8NA56	2290270		GO_Central	GO_REF:0000119
Ttc29	Mouse	sperm flagellum	is_active_in	IBA	PANTHER:PTN002927619 more ...	2290270		GO_Central	GO_REF:0000033

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ttc29	Mouse	molecular_function	enables	ND		2290270		MGI	GO_REF:0000015
Ttc29	Mouse	protein binding	enables	ISO	UniProtKB:Q9H0C1	9068941	PMID:32296183	IntAct	PMID:32296183

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ttc29	Mouse	abnormal sperm end piece morphology		IAGP		5509061		MGI	PMID:31735294
Ttc29	Mouse	abnormal sperm midpiece morphology		IAGP		5509061		MGI	PMID:31735294
Ttc29	Mouse	abnormal sperm principal piece morphology		IAGP		5509061		MGI	PMID:31735294
Ttc29	Mouse	asthenozoospermia		IAGP		5509061		MGI	PMID:31735294
Ttc29	Mouse	decreased sperm progressive motility		IAGP		5509061		MGI	PMID:31735294
Ttc29	Mouse	hairpin sperm flagellum		IAGP		5509061		MGI	PMID:31735294
Ttc29	Mouse	reduced male fertility		IAGP		5509061		MGI	PMID:31735294
Ttc29	Mouse	shortened QRS complex duration		IEA		5509061		MGI

#	Reference Title	Reference Citation
1.	Functional annotation of a full-length mouse cDNA collection.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:10349636	PMID:11042159	PMID:11076861	PMID:12477932	PMID:14610273	PMID:16141072	PMID:16141073	PMID:21267068	PMID:21873635	PMID:31735292	PMID:31735294	PMID:37196079
PMID:38355793

Ttc29
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	78,939,911 - 79,120,955 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	78,939,926 - 79,120,955 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	78,213,282 - 78,394,326 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	78,213,297 - 78,394,326 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	80,737,241 - 80,918,225 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	81,109,414 - 81,290,398 (+)	NCBI		MGSCv36	mm8
Celera	8	82,486,892 - 82,670,357 (+)	NCBI		Celera
Cytogenetic Map	8	C1	NCBI
cM Map	8	36.86	NCBI

TTC29
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	146,706,617 - 146,945,864 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	146,706,617 - 146,945,882 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	147,627,769 - 147,867,016 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	147,847,629 - 148,086,484 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	4	144,948,722 - 145,187,595 (-)	NCBI		Celera
Cytogenetic Map	4	q31.22	NCBI
HuRef	4	143,355,394 - 143,594,202 (-)	NCBI		HuRef
CHM1_1	4	147,605,438 - 147,844,306 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	4	150,030,294 - 150,269,471 (-)	NCBI		T2T-CHM13v2.0

Ttc29
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	46,436,526 - 46,654,891 (-)	NCBI		GRCr8
mRatBN7.2	19	29,531,707 - 29,750,635 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	29,532,663 - 29,750,615 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	36,380,594 - 36,592,167 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	37,034,480 - 37,246,052 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	39,283,571 - 39,495,154 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	33,205,576 - 33,424,955 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	33,206,026 - 33,424,972 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	44,097,159 - 44,315,561 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	31,434,795 - 31,666,000 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	19	29,031,077 - 29,241,884 (-)	NCBI		Celera
Cytogenetic Map	19	q11	NCBI

Ttc29
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955428	2,378,631 - 2,571,259 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955428	2,378,498 - 2,571,246 (-)	NCBI	ChiLan1.0	ChiLan1.0

TTC29
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	144,570,987 - 144,814,715 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	144,937,199 - 145,180,676 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	139,037,462 - 139,281,009 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	150,694,682 - 150,937,941 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	150,694,813 - 150,938,434 (-)	Ensembl	panpan1.1		panPan2

TTC29
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	45,093,105 - 45,338,890 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	45,093,132 - 45,338,159 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	45,488,499 - 45,731,616 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	45,766,303 - 46,007,216 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	45,766,296 - 46,007,263 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	45,038,242 - 45,280,854 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	45,130,739 - 45,376,455 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	45,395,876 - 45,639,194 (-)	NCBI		UU_Cfam_GSD_1.0

Ttc29
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405301	45,026,539 - 45,221,309 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936535	2,463,914 - 2,581,827 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936535	2,468,640 - 2,658,628 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TTC29
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	81,746,489 - 81,982,760 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	81,746,479 - 81,981,617 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

TTC29
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	93,209,932 - 93,457,501 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	93,317,111 - 93,451,798 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	72,886,689 - 73,146,228 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ttc29
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624853	5,498,522 - 5,709,558 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624853	5,498,697 - 5,709,509 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Ttc29
15663 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	733
Count of miRNA genes:	419
Interacting mature miRNAs:	490
Transcripts:	ENSMUST00000049395, ENSMUST00000109902, ENSMUST00000117845, ENSMUST00000124713, ENSMUST00000126172, ENSMUST00000137424, ENSMUST00000143157, ENSMUST00000156432
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10043992	Hbnr11_m	Heligmosomoides bakeri nematode resistance 11 (mouse)			Not determined		8	66326836	100326976	Mouse
1301013	Capsq4_m	capsaicin sensitivity related QTL 4 (mouse)			Not determined		8	36630154	93455280	Mouse
1301717	Adip4_m	adiposity 4 (mouse)			Not determined		8	48090064	82090180	Mouse
1357715	Alaa3_m	alopecia areata 3 (mouse)			Not determined		8	49245591	83245673	Mouse
11353828	Gf7_m	gonadal fat pad weight 7 (mouse)					8	58928107	92928107	Mouse
14746987	Manh64_m	mandible shape 64 (mouse)					8	50505958	84505958	Mouse
1357470	Obq16_m	obesity QTL 16 (mouse)			Not determined		8	76411976	110412125	Mouse
1558875	Eae31_m	experimental allergic encephalomyelitis susceptibility 31 (mouse)			Not determined		8	35109930	115563747	Mouse
1357787	Vtbt5_m	vertebral trabecular bone trait 5 (mouse)			Not determined		8	66084397	100084549	Mouse
10766453	Char11_m	P. chabaudi malaria resistance QTL 11 (mouse)					8	48090064	82090180	Mouse
1301506	Aevm1_m	autoimmune extremity vasculitis in MRL mice 1 (mouse)			Not determined		8	54740461	88740637	Mouse
1301441	Skull11_m	skull morphology 11 (mouse)			Not determined		8	48190168	82190288	Mouse
1301952	Im3_m	immunoregulatory 3 (mouse)			Not determined		8	55159258	89159407	Mouse
1301767	Fcsa2_m	femoral cross-sectional area 2 (mouse)			Not determined		8	71032003	105032123	Mouse
10412234	Nhdlq14_m	non-HDL QTL 14 (mouse)			Not determined		8	76411976	110412125	Mouse
4140967	Bmd39_m	bone mineral density 39 (mouse)			Not determined		8	32506572	117965439	Mouse
1357708	Orq1_m	ovulation rate QTL 1 (mouse)			Not determined		8	71740461	124622354	Mouse
4141285	Tgq18_m	triglyceride QTL 18 (mouse)			Not determined			64186736	98186736	Mouse
4141797	Skmw16_m	skeletal muscle weight 16 (mouse)			Not determined		8	64666176	98666325	Mouse
14747005	Mancz7_m	mandible centroid size 7 (mouse)					8	50505958	84505958	Mouse
27226754	Femd6_m	femur midshaft diameter 6, 10 week (mouse)					8	37867154	110326632	Mouse
10043975	Obq31_m	obesity QTL 31 (mouse)			Not determined		8	59136404	93136404	Mouse
10412287	Carg3_m	Candida albicans resistance gene 3 (mouse)			Not determined		8	56298872	90298872	Mouse
1301874	Hdlq16_m	HDL QTL 16 (mouse)			Not determined		8	76411976	110412125	Mouse
1301872	Cd4ts3_m	CD4 T cell subset 3 (mouse)			Not determined		8	72122809	106123021	Mouse
10766466	Char12_m	P. chabaudi malaria resistance QTL 12 (mouse)					8	68722479	83326976	Mouse
1301688	Orch6_m	autoimmune orchitis resistance 6 (mouse)			Not determined		8	61513479	95513605	Mouse
1558780	Idd22_m	insulin dependent diabetes susceptibility 22 (mouse)			Not determined		8	71829531	105829637	Mouse
1300920	Pitm3_m	prion incubation time 3 (mouse)			Not determined		8	73929123	107929226	Mouse
12904744	Carcdq1_m	cardiac collagen deposition QTL 1 (mouse)					8	40162297	95416226	Mouse
4141395	Char2a_m	P. chabaudi malaria resistance QTL 2a (mouse)			Not determined			71589427	90929226	Mouse
14700686	Civq3_m	cerebral infarct volume QTL 3 (mouse)					8	52334843	86334843	Mouse
4142283	Imraq2_m	immune response to AAV2 QTL 2 (mouse)			Not determined		8	71032003	105032123	Mouse
27095912	Pglq14_m	pelvic girdle length QTL 14, 16 week (mouse)					8	74126628	126826739	Mouse
4142023	W3q5_m	weight 3 weeks QTL 5 (mouse)			Not determined			71740461	124622354	Mouse
1558890	Lith18_m	lithogenic gene 18 (mouse)			Not determined		8	76402145	110402251	Mouse

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	NM_183096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006531400	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_011248516	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_011248517	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_011248518	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC117544	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC133181	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC140845	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK006580	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC048386	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000049395 ⟹ ENSMUSP00000041919

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	78,939,971 - 79,120,955 (+)	Ensembl
GRCm38.p6 Ensembl	8	78,213,342 - 78,394,326 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000109902 ⟹ ENSMUSP00000105528

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	78,945,423 - 79,120,312 (+)	Ensembl
GRCm38.p6 Ensembl	8	78,218,794 - 78,393,683 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000117845 ⟹ ENSMUSP00000112445

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	78,939,926 - 78,947,604 (+)	Ensembl
GRCm38.p6 Ensembl	8	78,213,297 - 78,220,975 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000124713

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	79,117,611 - 79,120,403 (+)	Ensembl
GRCm38.p6 Ensembl	8	78,390,982 - 78,393,774 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000126172 ⟹ ENSMUSP00000122383

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	78,939,931 - 78,947,462 (+)	Ensembl
GRCm38.p6 Ensembl	8	78,213,302 - 78,220,833 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000137424

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	78,939,944 - 78,944,647 (+)	Ensembl
GRCm38.p6 Ensembl	8	78,213,315 - 78,218,018 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000143157

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	78,978,120 - 79,003,458 (+)	Ensembl
GRCm38.p6 Ensembl	8	78,251,491 - 78,276,829 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000156432

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	78,939,979 - 78,944,591 (+)	Ensembl
GRCm38.p6 Ensembl	8	78,213,350 - 78,217,962 (+)	Ensembl

RefSeq Acc Id:

NM_183096 ⟹ NP_898919

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	78,939,971 - 79,120,955 (+)	NCBI
GRCm38	8	78,213,342 - 78,394,326 (+)	NCBI
MGSCv37	8	80,737,241 - 80,918,225 (+)	RGD
Celera	8	82,486,892 - 82,670,357 (+)	RGD
cM Map	8		ENTREZGENE

Sequence:

show sequence

GCCAGGCCAACAATCTGGGATGAGAGTACCGCGCCCAGCACCCACCGCCTGCAGAAGCTTAGTCAGGGACACAGAATCACAGGCCCAGAGCTAGTTTTCTAAGGTTTGTGGGGCAAGGCTGGGGACAG
GACCTGGTCAGCTCCCAGAAGAGTGGGCGGCTCTTCCTTTCCAAGAACCCCTTCTTCCATTACTTGGGCCCCAGCTTGGTATTTTGCTTACAGAATTTTCAGACAGGCCTCTAAGAGCCCAGAGCAAT
CGGTTATCTGCAAATGTGGATGGCTCTGTATTCACATACTTTGCATAAGGACAGACTTTTTACAACAGGACTGTGTGGCCTGGAGGCCCTGACCTAAGAGGGGCTCAACTTCTGGACATTTCATTAAG
CCCCCCAATGGCTACCTTTCCCCCACTTCCCATGACTCATACAAGGCTTGCGATCTTAGCCAGGCAGAAGCTACCATGCTCTTCAAAAAAAATCCCAAGGGCCCAGTTGATCAAAGAGAAAGAGGACA
TAGATTATTACCTGGAACAGAATTTCAAAGGGCTGTCGAAAGAAGAGGTGGCTGCCCACAGGAACTCATACAAGAAGAGCATCTGCGTGGACATGCTGCGAGATGGGTTCCACAAGTCCTTCACCGAG
CTCTTTGCACTGATGGAACAGTGGGATAAGCTCCGGGAAGCTGCGAAGGCACAGTCCCTCTTCTGGCAGCAGAGGCCTCTGGAGGACCAGCCGGACAAGCTAGACAATTTCTACCACTACCTGACCAG
GGCCGAGGCTGCCGAGAGGAAAGGATACTATGAGGAGGTATATAACAACCTGTATGCTCTGGCCTGTTATTTCGATAATTCTGAAGACAAGTGGGTGAGGAATCACTTCTACGAACGGTGTTTTAATA
TTGCTCAGCTGATCAAAGCTGACGGCGGGAAGAAAGAGGCAGAGGCCGAGTCACACATGGGACTTCTTTTCGAGGAAGAGGGTGAGCTCCTGAAGGCTGCAGAGCACTATGAAGCATTCCATGAACTG
ACACACGGACGGCTCTGGAAGGATGGTACGGGCCAGCTTCTCAACTTGGTGGCCTGTGAAAGTCTCGTGAGGACCTACAGATTGCTCTCAGACAGGATGCTGGAAAACAAAGACTACAAACAGGCCAT
CAAAATCCTAATAAAAGCTTCTGAAATAGCCAGAGAAGGCAATGACAGAAGCATGGAAGGGGAGGCTTCTTACTACCTGGGCTTGGCCCACTTGGCTTCTGGAGAATATGAAACCGCACTAACAGTGC
TGAATCGGTACAGTGAGATCTCCACAAGTCTGGATGACGATCATGGCCTGGGGAGAGCCTATGAGGCTATCGCCAAGGCCCTGCAGAGCCAAGGGGAGACAACAGAAGCAATTAATTACCTGGAGAAG
TTCGTGACAATTGCAAGAAACAACTTGCAAAGCCTCGATATGATTCGAGCATGCACGATGCTCGGCGACATCTACAATGAAAAGGGGCAATACAGCAAGGCTTCCGAGTACTTCCAACAAGCTTTCAG
CACCGCGATGGAGCTCATGAAAACGGCGCTCATGGATGAAACCAAAGTCCACTATGGGATAGCCAGAGCGCACCAGATGATGCTGGCGATGAAGGGTTACATCGAATCTGCCGACTCGAATGGCCTCA
ACTGCCTGCTGTCCTGGAAGGAGACTAGAACTCAAATCGAGTACGACCCGATTCTAGGAGAGTCTAGAAGAGCCACAGAAGATAACATATATCAACTCCCAGATGCTGAGGAAGAAACAAGAAGGTCT
CCAGAAAATCAATAACACGGAACTGAAGTGGCTCAACGTCAAAGCAGGAAGAAACTTAGCACATAGCCTTAGACCTCATTAGACAGGAGCACGTAACAGCTGATAGGGAGTTGTAAAAAGAAGATTAC
AGTTGTCTTTATTGAATTTTGTGCTGCCGTAACTATGGCAAGCTTATGAAGATGAAGTACAGCTTAGATGGTTAGAACGATCAGCACTTACTCATAAGATAAACTTTAGAATGTCCCCTCCTACATGC
TACTCCACAAGAACTCCAGGAGTTTAAATCTGAACTGTTTCTGATTGCAAAATGTTTACGAGTTAAAGACATCTTTCACACTGCATGATAATCTGCTAAAATCTCAGGGAAACCTCAGCAGACACAAA
GGGCCATGAGCAGTCTGTGCTTGTATTGCTAAGCACTGCTAAATTTGCTTTATGTGTAGAAACTTAAATTCATGGCACGCTTAGCTGACAGGACACAGCCTAACATACCCACGTGCCTCGAGGCAGGG
GGGAAATCCTTCAGTCTCAGGAACCTTTGCTGGTTTGCTTGCAACTGAAAGACCGCAGCTTCCCTCTGAAACCTCTGGAACTCCTCCCGTGAATCCATAAGGGTAGTACATTACCAAGAATAAAGACT
TTCTTCCTTTTCAATGCA

hide sequence

RefSeq Acc Id:

XM_006531400 ⟹ XP_006531463

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	78,939,911 - 79,120,955 (+)	NCBI
GRCm38	8	78,213,282 - 78,394,326 (+)	NCBI

Sequence:

show sequence

TGGCCCGCCGAGCCCCTCTGTTTCCATGGAGACGCTTTCAGCGTCCCCTGTCTGCACCAAGCCA
GGCCAACAATCTGGGATGAGAGTACCGCGCCCAGCACCCACCGCCTGCAGAAGCTTAGTCAGGGACACAGAATCACAGGCCCAGAGCTAGTTTTCTAAGTATTTTGCTTACAGAATTTTCAGACAGGC
CTCTAAGAGCCCAGAGCAATCGGTTATCTGCAAATGTGGATGGCTCTGTATTCACATACTTTGCATAAGGACAGACTTTTTACAACAGGACTGTGTGGCCTGGAGGCCCTGACCTAAGAGGGGCTCAA
CTTCTGGACATTTCATTAAGCCCCCCAATGGCTACCTTTCCCCCACTTCCCATGACTCATACAAGGCTTGCGATCTTAGCCAGGCAGAAGCTACCATGCTCTTCAAAAAAAATCCCAAGGGCCCAGTT
GATCAAAGAGAAAGAGGACATAGATTATTACCTGGAACAGAATTTCAAAGGGCTGTCGAAAGAAGAGGTGGCTGCCCACAGGAACTCATACAAGAAGAGCATCTGCGTGGACATGCTGCGAGATGGGT
TCCACAAGTCCTTCACCGAGCTCTTTGCACTGATGGAACAGTGGGATAAGCTCCGGGAAGCTGCGAAGGCACAGTCCCTCTTCTGGCAGCAGAGGCCTCTGGAGGACCAGCCGGACAAGCTAGACAAT
TTCTACCACTACCTGACCAGGGCCGAGGCTGCCGAGAGGAAAGGATACTATGAGGAGGTATATAACAACCTGTATGCTCTGGCCTGTTATTTCGATAATTCTGAAGACAAGTGGGTGAGGAATCACTT
CTACGAACGGTGTTTTAATATTGCTCAGCTGATCAAAGCTGACGGCGGGAAGAAAGAGGCAGAGGCCGAGTCACACATGGGACTTCTTTTCGAGGAAGAGGGTGAGCTCCTGAAGGCTGCAGAGCACT
ATGAAGCATTCCATGAACTGACACACGGACGGCTCTGGAAGGATGGTACGGGCCAGCTTCTCAACTTGGTGGCCTGTGAAAGTCTCGTGAGGACCTACAGATTGCTCTCAGACAGGATGCTGGAAAAC
AAAGACTACAAACAGGCCATCAAAATCCTAATAAAAGCTTCTGAAATAGCCAGAGAAGGCAATGACAGAAGCATGGAAGGGGAGGCTTCTTACTACCTGGGCTTGGCCCACTTGGCTTCTGGAGAATA
TGAAACCGCACTAACAGTGCTGAATCGGTACAGTGAGATCTCCACAAGTCTGGATGACGATCATGGCCTGGGGAGAGCCTATGAGGCTATCGCCAAGGCCCTGCAGAGCCAAGGGGAGACAACAGAAG
CAATTAATTACCTGGAGAAGTTCGTGACAATTGCAAGAAACAACTTGCAAAGCCTCGATATGATTCGAGCATGCACGATGCTCGGCGACATCTACAATGAAAAGGGGCAATACAGCAAGGCTTCCGAG
TACTTCCAACAAGCTTTCAGCACCGCGATGGAGCTCATGAAAACGGCGCTCATGGATGAAACCAAAGTCCACTATGGGATAGCCAGAGCGCACCAGATGATGCTGGCGATGAAGGGTTACATCGAATC
TGCCGACTCGAATGGCCTCAACTGCCTGCTGTCCTGGAAGGAGACTAGAACTCAAATCGAGTACGACCCGATTCTAGGAGAGTCTAGAAGAGCCACAGAAGATAACATATATCAACTCCCAGATGCTG
AGGAAGAAACAAGAAGGTCTCCAGAAAATCAATAACACGGAACTGAAGTGGCTCAACGTCAAAGCAGGAAGAAACTTAGCACATAGCCTTAGACCTCATTAGACAGGAGCACGTAACAGCTGATAGGG
AGTTGTAAAAAGAAGATTACAGTTGTCTTTATTGAATTTTGTGCTGCCGTAACTATGGCAAGCTTATGAAGATGAAGTACAGCTTAGATGGTTAGAACGATCAGCACTTACTCATAAGATAAACTTTA
GAATGTCCCCTCCTACATGCTACTCCACAAGAACTCCAGGAGTTTAAATCTGAACTGTTTCTGATTGCAAAATGTTTACGAGTTAAAGACATCTTTCACACTGCATGATAATCTGCTAAAATCTCAGG
GAAACCTCAGCAGACACAAAGGGCCATGAGCAGTCTGTGCTTGTATTGCTAAGCACTGCTAAATTTGCTTTATGTGTAGAAACTTAAATTCATGGCACGCTTAGCTGACAGGACACAGCCTAACATAC
CCACGTGCCTCGAGGCAGGGGGGAAATCCTTCAGTCTCAGGAACCTTTGCTGGTTTGCTTGCAACTGAAAGACCGCAGCTTCCCTCTGAAACCTCTGGAACTCCTCCCGTGAATCCATAAGGGTAGTA
CATTACCAAGAATAAAGACTTTCTTCCTTTTCAATGCA

hide sequence

RefSeq Acc Id:

XM_011248516 ⟹ XP_011246818

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	78,939,911 - 79,120,955 (+)	NCBI
GRCm38	8	78,213,282 - 78,394,326 (+)	NCBI

Sequence:

show sequence

TGGCCCGCCGAGCCCCTCTGTTTCCATGGAGACGCTTTCAGCGTCCCCTGTCTGCACCAAGCCA
GGCCAACAATCTGGGATGAGAGTACCGCGCCCAGCACCCACCGCCTGCAGAAGCTTAGTCAGGGACACAGAATCACAGGCCCAGAGCTAGTTTTCTAAGTATTTTGCTTACAGAATTTTCAGACAGGC
CTCTAAGAGCCCAGAGCAATCGGTTATCTGCAAATAATTCTCTTCTTCAAGTGTAACTGTGACAATCTCCCTCAGGTGGATGGCTCTGTATTCACATACTTTGCATAAGGACAGACTTTTTACAACAG
GACTGTGTGGCCTGGAGGCCCTGACCTAAGAGGGGCTCAACTTCTGGACATTTCATTAAGCCCCCCAATGGCTACCTTTCCCCCACTTCCCATGACTCATACAAGGCTTGCGATCTTAGCCAGGCAGA
AGCTACCATGCTCTTCAAAAAAAATCCCAAGGGCCCAGTTGATCAAAGAGAAAGAGGACATAGATTATTACCTGGAACAGAATTTCAAAGGGCTGTCGAAAGAAGAGGTGGCTGCCCACAGGAACTCA
TACAAGAAGAGCATCTGCGTGGACATGCTGCGAGATGGGTTCCACAAGTCCTTCACCGAGCTCTTTGCACTGATGGAACAGTGGGATAAGCTCCGGGAAGCTGCGAAGGCACAGTCCCTCTTCTGGCA
GCAGAGGCCTCTGGAGGACCAGCCGGACAAGCTAGACAATTTCTACCACTACCTGACCAGGGCCGAGGCTGCCGAGAGGAAAGGATACTATGAGGAGGTATATAACAACCTGTATGCTCTGGCCTGTT
ATTTCGATAATTCTGAAGACAAGTGGGTGAGGAATCACTTCTACGAACGGTGTTTTAATATTGCTCAGCTGATCAAAGCTGACGGCGGGAAGAAAGAGGCAGAGGCCGAGTCACACATGGGACTTCTT
TTCGAGGAAGAGGGTGAGCTCCTGAAGGCTGCAGAGCACTATGAAGCATTCCATGAACTGACACACGGACGGCTCTGGAAGGATGGTACGGGCCAGCTTCTCAACTTGGTGGCCTGTGAAAGTCTCGT
GAGGACCTACAGATTGCTCTCAGACAGGATGCTGGAAAACAAAGACTACAAACAGGCCATCAAAATCCTAATAAAAGCTTCTGAAATAGCCAGAGAAGGCAATGACAGAAGCATGGAAGGGGAGGCTT
CTTACTACCTGGGCTTGGCCCACTTGGCTTCTGGAGAATATGAAACCGCACTAACAGTGCTGAATCGGTACAGTGAGATCTCCACAAGTCTGGATGACGATCATGGCCTGGGGAGAGCCTATGAGGCT
ATCGCCAAGGCCCTGCAGAGCCAAGGGGAGACAACAGAAGCAATTAATTACCTGGAGAAGTTCGTGACAATTGCAAGAAACAACTTGCAAAGCCTCGATATGATTCGAGCATGCACGATGCTCGGCGA
CATCTACAATGAAAAGGGGCAATACAGCAAGGCTTCCGAGTACTTCCAACAAGCTTTCAGCACCGCGATGGAGCTCATGAAAACGGCGCTCATGGATGAAACCAAAGTCCACTATGGGATAGCCAGAG
CGCACCAGATGATGCTGGCGATGAAGGGTTACATCGAATCTGCCGACTCGAATGGCCTCAACTGCCTGCTGTCCTGGAAGGAGACTAGAACTCAAATCGAGTACGACCCGATTCTAGGAGAGTCTAGA
AGAGCCACAGAAGATAACATATATCAACTCCCAGATGCTGAGGAAGAAACAAGAAGGTCTCCAGAAAATCAATAACACGGAACTGAAGTGGCTCAACGTCAAAGCAGGAAGAAACTTAGCACATAGCC
TTAGACCTCATTAGACAGGAGCACGTAACAGCTGATAGGGAGTTGTAAAAAGAAGATTACAGTTGTCTTTATTGAATTTTGTGCTGCCGTAACTATGGCAAGCTTATGAAGATGAAGTACAGCTTAGA
TGGTTAGAACGATCAGCACTTACTCATAAGATAAACTTTAGAATGTCCCCTCCTACATGCTACTCCACAAGAACTCCAGGAGTTTAAATCTGAACTGTTTCTGATTGCAAAATGTTTACGAGTTAAAG
ACATCTTTCACACTGCATGATAATCTGCTAAAATCTCAGGGAAACCTCAGCAGACACAAAGGGCCATGAGCAGTCTGTGCTTGTATTGCTAAGCACTGCTAAATTTGCTTTATGTGTAGAAACTTAAA
TTCATGGCACGCTTAGCTGACAGGACACAGCCTAACATACCCACGTGCCTCGAGGCAGGGGGGAAATCCTTCAGTCTCAGGAACCTTTGCTGGTTTGCTTGCAACTGAAAGACCGCAGCTTCCCTCTG
AAACCTCTGGAACTCCTCCCGTGAATCCATAAGGGTAGTACATTACCAAGAATAAAGACTTTCTTCCTTTTCAATGCA

hide sequence

RefSeq Acc Id:

XM_011248517 ⟹ XP_011246819

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	78,939,911 - 79,120,955 (+)	NCBI
GRCm38	8	78,213,282 - 78,394,326 (+)	NCBI

Sequence:

show sequence

TGGCCCGCCGAGCCCCTCTGTTTCCATGGAGACGCTTTCAGCGTCCCCTGTCTGCACCAAGCCAGGCCAACAATCTGGGATGAGAGTACCGCGCCCAGCACCCACCGCCTGCAGAAGCTTAGTCAGGG
ACACAGAATCACAGGCCCAGAGCTAGTTTTCTAAGGTTTGTGGGGCAAGGCTGGGGACAGGACCTGGTCAGCTCCCAGAAGAGTGGGCGGCTCTTCCTTTCCAAGAACCCCTTCTTCCATTACTTGGG
CCCCAGCTTGGGTAAGAGGAGAGAAAAGGCCCTCTCCACTCATCCCCCCAAATCAATTCCCTCGCAGAAGGCGCTCTTCTTGCCCCTTGGACCTTGGTGGGCCAAGAAAAACCAAACCTCTCTAGGCA
CAGCAGACCTGTTCCGAGTATTTTGCTTACAGAATTTTCAGACAGGCCTCTAAGAGCCCAGAGCAATCGGTTATCTGCAAATAATTCTCTTCTTCAAGTGTAACTGTGACAATCTCCCTCAGGTGGAT
GGCTCTGTATTCACATACTTTGCATAAGGACAGACTTTTTACAACAGGACTGTGTGGCCTGGAGGCCCTGACCTAAGAGGGGCTCAACTTCTGGACATTTCATTAAGCCCCCCAATGGCTACCTTTCC
CCCACTTCCCATGACTCATACAAGGCTTGCGATCTTAGCCAGGCAGAAGCTACCATGCTCTTCAAAAAAAATCCCAAGGGCCCAGTTGATCAAAGAGAAAGAGGACATAGATTATTACCTGGAACAGA
ATTTCAAAGGGCTGTCGAAAGAAGAGGTGGCTGCCCACAGGAACTCATACAAGAAGAGCATCTGCGTGGACATGCTGCGAGATGGGTTCCACAAGTCCTTCACCGAGCTCTTTGCACTGATGGAACAG
TGGGATAAGCTCCGGGAAGCTGCGAAGGCACAGTCCCTCTTCTGGCAGCAGAGGCCTCTGGAGGACCAGCCGGACAAGCTAGACAATTTCTACCACTACCTGACCAGGGCCGAGGCTGCCGAGAGGAA
AGGATACTATGAGGAGGTATATAACAACCTGTATGCTCTGGCCTGTTATTTCGATAATTCTGAAGACAAGTGGGTGAGGAATCACTTCTACGAACGGTGTTTTAATATTGCTCAGCTGATCAAAGCTG
ACGGCGGGAAGAAAGAGGCAGAGGCCGAGTCACACATGGGACTTCTTTTCGAGGAAGAGGGTGAGCTCCTGAAGGCTGCAGAGCACTATGAAGCATTCCATGAACTGACACACGGACGGCTCTGGAAG
GATGGTACGGGCCAGCTTCTCAACTTGGTGGCCTGTGAAAGTCTCGTGAGGACCTACAGATTGCTCTCAGACAGGATGCTGGAAAACAAAGACTACAAACAGGCCATCAAAATCCTAATAAAAGCTTC
TGAAATAGCCAGAGAAGGCAATGACAGAAGCATGGAAGGGGAGGCTTCTTACTACCTGGGCTTGGCCCACTTGGCTTCTGGAGAATATGAAACCGCACTAACAGTGCTGAATCGGTACAGTGAGATCT
CCACAAGTCTGGATGACGATCATGGCCTGGGGAGAGCCTATGAGGCTATCGCCAAGGCCCTGCAGAGCCAAGGGGAGACAACAGAAGCAATTAATTACCTGGAGAAGTTCGTGACAATTGCAAGAAAC
AACTTGCAAAGCCTCGATATGATTCGAGCATGCACGATGCTCGGCGACATCTACAATGAAAAGGGGCAATACAGCAAGGCTTCCGAGTACTTCCAACAAGCTTTCAGCACCGCGATGGAGCTCATGAA
AACGGCGCTCATGGATGAAACCAAAGTCCACTATGGGATAGCCAGAGCGCACCAGATGATGCTGGCGATGAAGGGTTACATCGAATCTGCCGACTCGAATGGCCTCAACTGCCTGCTGTCCTGGAAGG
AGACTAGAACTCAAATCGAGTACGACCCGATTCTAGGAGAGTCTAGAAGAGCCACAGAAGATAACATATATCAACTCCCAGATGCTGAGGAAGAAACAAGAAGGTCTCCAGAAAATCAATAACACGGA
ACTGAAGTGGCTCAACGTCAAAGCAGGAAGAAACTTAGCACATAGCCTTAGACCTCATTAGACAGGAGCACGTAACAGCTGATAGGGAGTTGTAAAAAGAAGATTACAGTTGTCTTTATTGAATTTTG
TGCTGCCGTAACTATGGCAAGCTTATGAAGATGAAGTACAGCTTAGATGGTTAGAACGATCAGCACTTACTCATAAGATAAACTTTAGAATGTCCCCTCCTACATGCTACTCCACAAGAACTCCAGGA
GTTTAAATCTGAACTGTTTCTGATTGCAAAATGTTTACGAGTTAAAGACATCTTTCACACTGCATGATAATCTGCTAAAATCTCAGGGAAACCTCAGCAGACACAAAGGGCCATGAGCAGTCTGTGCT
TGTATTGCTAAGCACTGCTAAATTTGCTTTATGTGTAGAAACTTAAATTCATGGCACGCTTAGCTGACAGGACACAGCCTAACATACCCACGTGCCTCGAGGCAGGGGGGAAATCCTTCAGTCTCAGG
AACCTTTGCTGGTTTGCTTGCAACTGAAAGACCGCAGCTTCCCTCTGAAACCTCTGGAACTCCTCCCGTGAATCCATAAGGGTAGTACATTACCAAGAATAAAGACTTTCTTCCTTTTCAATGCA

hide sequence

RefSeq Acc Id:

XM_011248518 ⟹ XP_011246820

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	78,939,911 - 79,120,955 (+)	NCBI
GRCm38	8	78,213,282 - 78,394,326 (+)	NCBI

Sequence:

show sequence

TGGCCCGCCGAGCCCCTCTGTTTCCATGGAGACGCTTTCAGCGTCCCCTGTCTGCACCAAGCCAGGCCAACAATCTGGGATGAGAGTACCGCGCCCAGCACCCACCGCCTGCAGAAGCTTAGTCAGGG
ACACAGAATCACAGGCCCAGAGCTAGTTTTCTAAGGTTTGTGGGGCAAGGCTGGGGACAGGACCTGGTCAGCTCCCAGAAGAGTGGGCGGCTCTTCCTTTCCAAGAACCCCTTCTTCCATTACTTGGG
CCCCAGCTTGGGTAAGAGGAGAGAAAAGGCCCTCTCCACTCATCCCCCCAAATCAATTCCCTCGCAGAAGGCGCTCTTCTTGCCCCTTGGACCTTGGTGGGCCAAGAAAAACCAAACCTCTCTAGGCA
CAGCAGACCTGTTCCGAGTATTTTGCTTACAGAATTTTCAGACAGGCCTCTAAGAGCCCAGAGCAATCGGTTATCTGCAAATGTGGATGGCTCTGTATTCACATACTTTGCATAAGGACAGACTTTTT
ACAACAGGACTGTGTGGCCTGGAGGCCCTGACCTAAGAGGGGCTCAACTTCTGGACATTTCATTAAGCCCCCCAATGGCTACCTTTCCCCCACTTCCCATGACTCATACAAGGCTTGCGATCTTAGCC
AGGCAGAAGCTACCATGCTCTTCAAAAAAAATCCCAAGGGCCCAGTTGATCAAAGAGAAAGAGGACATAGATTATTACCTGGAACAGAATTTCAAAGGGCTGTCGAAAGAAGAGGTGGCTGCCCACAG
GAACTCATACAAGAAGAGCATCTGCGTGGACATGCTGCGAGATGGGTTCCACAAGTCCTTCACCGAGCTCTTTGCACTGATGGAACAGTGGGATAAGCTCCGGGAAGCTGCGAAGGCACAGTCCCTCT
TCTGGCAGCAGAGGCCTCTGGAGGACCAGCCGGACAAGCTAGACAATTTCTACCACTACCTGACCAGGGCCGAGGCTGCCGAGAGGAAAGGATACTATGAGGAGGTATATAACAACCTGTATGCTCTG
GCCTGTTATTTCGATAATTCTGAAGACAAGTGGGTGAGGAATCACTTCTACGAACGGTGTTTTAATATTGCTCAGCTGATCAAAGCTGACGGCGGGAAGAAAGAGGCAGAGGCCGAGTCACACATGGG
ACTTCTTTTCGAGGAAGAGGGTGAGCTCCTGAAGGCTGCAGAGCACTATGAAGCATTCCATGAACTGACACACGGACGGCTCTGGAAGGATGGTACGGGCCAGCTTCTCAACTTGGTGGCCTGTGAAA
GTCTCGTGAGGACCTACAGATTGCTCTCAGACAGGATGCTGGAAAACAAAGACTACAAACAGGCCATCAAAATCCTAATAAAAGCTTCTGAAATAGCCAGAGAAGGCAATGACAGAAGCATGGAAGGG
GAGGCTTCTTACTACCTGGGCTTGGCCCACTTGGCTTCTGGAGAATATGAAACCGCACTAACAGTGCTGAATCGGTACAGTGAGATCTCCACAAGTCTGGATGACGATCATGGCCTGGGGAGAGCCTA
TGAGGCTATCGCCAAGGCCCTGCAGAGCCAAGGGGAGACAACAGAAGCAATTAATTACCTGGAGAAGTTCGTGACAATTGCAAGAAACAACTTGCAAAGCCTCGATATGATTCGAGCATGCACGATGC
TCGGCGACATCTACAATGAAAAGGGGCAATACAGCAAGGCTTCCGAGTACTTCCAACAAGCTTTCAGCACCGCGATGGAGCTCATGAAAACGGCGCTCATGGATGAAACCAAAGTCCACTATGGGATA
GCCAGAGCGCACCAGATGATGCTGGCGATGAAGGGTTACATCGAATCTGCCGACTCGAATGGCCTCAACTGCCTGCTGTCCTGGAAGGAGACTAGAACTCAAATCGAGTACGACCCGATTCTAGGAGA
GTCTAGAAGAGCCACAGAAGATAACATATATCAACTCCCAGATGCTGAGGAAGAAACAAGAAGGTCTCCAGAAAATCAATAACACGGAACTGAAGTGGCTCAACGTCAAAGCAGGAAGAAACTTAGCA
CATAGCCTTAGACCTCATTAGACAGGAGCACGTAACAGCTGATAGGGAGTTGTAAAAAGAAGATTACAGTTGTCTTTATTGAATTTTGTGCTGCCGTAACTATGGCAAGCTTATGAAGATGAAGTACA
GCTTAGATGGTTAGAACGATCAGCACTTACTCATAAGATAAACTTTAGAATGTCCCCTCCTACATGCTACTCCACAAGAACTCCAGGAGTTTAAATCTGAACTGTTTCTGATTGCAAAATGTTTACGA
GTTAAAGACATCTTTCACACTGCATGATAATCTGCTAAAATCTCAGGGAAACCTCAGCAGACACAAAGGGCCATGAGCAGTCTGTGCTTGTATTGCTAAGCACTGCTAAATTTGCTTTATGTGTAGAA
ACTTAAATTCATGGCACGCTTAGCTGACAGGACACAGCCTAACATACCCACGTGCCTCGAGGCAGGGGGGAAATCCTTCAGTCTCAGGAACCTTTGCTGGTTTGCTTGCAACTGAAAGACCGCAGCTT
CCCTCTGAAACCTCTGGAACTCCTCCCGTGAATCCATAAGGGTAGTACATTACCAAGAATAAAGACTTTCTTCCTTTTCAATGCA

hide sequence


Protein RefSeqs	NP_898919	(Get FASTA)	NCBI Sequence Viewer
	XP_006531463	(Get FASTA)	NCBI Sequence Viewer
	XP_011246818	(Get FASTA)	NCBI Sequence Viewer
	XP_011246819	(Get FASTA)	NCBI Sequence Viewer
	XP_011246820	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH48386	(Get FASTA)	NCBI Sequence Viewer
	BAC25147	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000041919
	ENSMUSP00000105528
	ENSMUSP00000112445.2
GenBank Protein	Q80VM3	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_898919 ⟸ NM_183096

- UniProtKB:

Q8CF30 (UniProtKB/Swiss-Prot), Q80VM3 (UniProtKB/Swiss-Prot), E9QLU4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MATFPPLPMTHTRLAILARQKLPCSSKKIPRAQLIKEKEDIDYYLEQNFKGLSKEEVAAHRNSYKKSICVDMLRDGFHKSFTELFALMEQWDKLREAAKAQSLFWQQRPLEDQPDKLDNFYHYLTRAE
AAERKGYYEEVYNNLYALACYFDNSEDKWVRNHFYERCFNIAQLIKADGGKKEAEAESHMGLLFEEEGELLKAAEHYEAFHELTHGRLWKDGTGQLLNLVACESLVRTYRLLSDRMLENKDYKQAIKI
LIKASEIAREGNDRSMEGEASYYLGLAHLASGEYETALTVLNRYSEISTSLDDDHGLGRAYEAIAKALQSQGETTEAINYLEKFVTIARNNLQSLDMIRACTMLGDIYNEKGQYSKASEYFQQAFSTA
MELMKTALMDETKVHYGIARAHQMMLAMKGYIESADSNGLNCLLSWKETRTQIEYDPILGESRRATEDNIYQLPDAEEETRRSPENQ

hide sequence

RefSeq Acc Id:	XP_006531463 ⟸ XM_006531400
- Peptide Label:	isoform X1
- UniProtKB:	Q8CF30 (UniProtKB/Swiss-Prot), Q80VM3 (UniProtKB/Swiss-Prot), E9QLU4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MATFPPLPMTHTRLAILARQKLPCSSKKIPRAQLIKEKEDIDYYLEQNFKGLSKEEVAAHRNSYKKSICVDMLRDGFHKSFTELFALMEQWDKLREAAKAQSLFWQQRPLEDQPDKLDNFYHYLTRAE AAERKGYYEEVYNNLYALACYFDNSEDKWVRNHFYERCFNIAQLIKADGGKKEAEAESHMGLLFEEEGELLKAAEHYEAFHELTHGRLWKDGTGQLLNLVACESLVRTYRLLSDRMLENKDYKQAIKI LIKASEIAREGNDRSMEGEASYYLGLAHLASGEYETALTVLNRYSEISTSLDDDHGLGRAYEAIAKALQSQGETTEAINYLEKFVTIARNNLQSLDMIRACTMLGDIYNEKGQYSKASEYFQQAFSTA MELMKTALMDETKVHYGIARAHQMMLAMKGYIESADSNGLNCLLSWKETRTQIEYDPILGESRRATEDNIYQLPDAEEETRRSPENQ hide sequence

RefSeq Acc Id:	XP_011246819 ⟸ XM_011248517
- Peptide Label:	isoform X1
- UniProtKB:	Q8CF30 (UniProtKB/Swiss-Prot), Q80VM3 (UniProtKB/Swiss-Prot), E9QLU4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MATFPPLPMTHTRLAILARQKLPCSSKKIPRAQLIKEKEDIDYYLEQNFKGLSKEEVAAHRNSYKKSICVDMLRDGFHKSFTELFALMEQWDKLREAAKAQSLFWQQRPLEDQPDKLDNFYHYLTRAE AAERKGYYEEVYNNLYALACYFDNSEDKWVRNHFYERCFNIAQLIKADGGKKEAEAESHMGLLFEEEGELLKAAEHYEAFHELTHGRLWKDGTGQLLNLVACESLVRTYRLLSDRMLENKDYKQAIKI LIKASEIAREGNDRSMEGEASYYLGLAHLASGEYETALTVLNRYSEISTSLDDDHGLGRAYEAIAKALQSQGETTEAINYLEKFVTIARNNLQSLDMIRACTMLGDIYNEKGQYSKASEYFQQAFSTA MELMKTALMDETKVHYGIARAHQMMLAMKGYIESADSNGLNCLLSWKETRTQIEYDPILGESRRATEDNIYQLPDAEEETRRSPENQ hide sequence

RefSeq Acc Id:	XP_011246820 ⟸ XM_011248518
- Peptide Label:	isoform X1
- UniProtKB:	Q8CF30 (UniProtKB/Swiss-Prot), Q80VM3 (UniProtKB/Swiss-Prot), E9QLU4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MATFPPLPMTHTRLAILARQKLPCSSKKIPRAQLIKEKEDIDYYLEQNFKGLSKEEVAAHRNSYKKSICVDMLRDGFHKSFTELFALMEQWDKLREAAKAQSLFWQQRPLEDQPDKLDNFYHYLTRAE AAERKGYYEEVYNNLYALACYFDNSEDKWVRNHFYERCFNIAQLIKADGGKKEAEAESHMGLLFEEEGELLKAAEHYEAFHELTHGRLWKDGTGQLLNLVACESLVRTYRLLSDRMLENKDYKQAIKI LIKASEIAREGNDRSMEGEASYYLGLAHLASGEYETALTVLNRYSEISTSLDDDHGLGRAYEAIAKALQSQGETTEAINYLEKFVTIARNNLQSLDMIRACTMLGDIYNEKGQYSKASEYFQQAFSTA MELMKTALMDETKVHYGIARAHQMMLAMKGYIESADSNGLNCLLSWKETRTQIEYDPILGESRRATEDNIYQLPDAEEETRRSPENQ hide sequence

RefSeq Acc Id:	XP_011246818 ⟸ XM_011248516
- Peptide Label:	isoform X1
- UniProtKB:	Q8CF30 (UniProtKB/Swiss-Prot), Q80VM3 (UniProtKB/Swiss-Prot), E9QLU4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MATFPPLPMTHTRLAILARQKLPCSSKKIPRAQLIKEKEDIDYYLEQNFKGLSKEEVAAHRNSYKKSICVDMLRDGFHKSFTELFALMEQWDKLREAAKAQSLFWQQRPLEDQPDKLDNFYHYLTRAE AAERKGYYEEVYNNLYALACYFDNSEDKWVRNHFYERCFNIAQLIKADGGKKEAEAESHMGLLFEEEGELLKAAEHYEAFHELTHGRLWKDGTGQLLNLVACESLVRTYRLLSDRMLENKDYKQAIKI LIKASEIAREGNDRSMEGEASYYLGLAHLASGEYETALTVLNRYSEISTSLDDDHGLGRAYEAIAKALQSQGETTEAINYLEKFVTIARNNLQSLDMIRACTMLGDIYNEKGQYSKASEYFQQAFSTA MELMKTALMDETKVHYGIARAHQMMLAMKGYIESADSNGLNCLLSWKETRTQIEYDPILGESRRATEDNIYQLPDAEEETRRSPENQ hide sequence

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q80VM3-F1-model_v2	AlphaFold	Q80VM3	1-471	view protein structure

RGD ID:

8667529

Promoter ID:

EPDNEW_M11796

Type:

initiation region

Name:

Ttc29_1

Description:

Mus musculus tetratricopeptide repeat domain 29 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	8	78,213,315 - 78,213,375	EPDNEW

RGD ID:

6843849

Promoter ID:

MM_KWN:54930

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

ES_Cell

Transcripts:

OTTMUST00000077908

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	8	80,914,706 - 80,915,206 (+)	MPROMDB

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000037101	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000049395	ENTREZGENE
	ENSMUST00000109902	ENTREZGENE
	ENSMUST00000117845.8	UniProtKB/Swiss-Prot
Gene3D-CATH	1.25.40.10	UniProtKB/Swiss-Prot
InterPro	Bac_ResReg_Asp_Phosphatase	UniProtKB/Swiss-Prot
	TPR-like_helical_dom_sf	UniProtKB/Swiss-Prot
	TPR_repeat	UniProtKB/Swiss-Prot
MGD	MGI:1920551	ENTREZGENE
NCBI Gene	73301	ENTREZGENE
PANTHER	TETRATRICOPEPTIDE REPEAT PROTEIN 29	UniProtKB/Swiss-Prot
	TETRATRICOPEPTIDE REPEAT PROTEIN 29	UniProtKB/Swiss-Prot
Pfam	TPR_12	UniProtKB/Swiss-Prot
	TPR_8	UniProtKB/Swiss-Prot
PhenoGen	Ttc29	PhenoGen
PROSITE	TPR	UniProtKB/Swiss-Prot
	TPR_REGION	UniProtKB/Swiss-Prot
SMART	TPR	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF48452	UniProtKB/Swiss-Prot
UniProt	A0A1C7CYV2_MOUSE	UniProtKB/TrEMBL
	E9QLU4	ENTREZGENE, UniProtKB/TrEMBL
	Q80VM3	ENTREZGENE
	Q8CF30	ENTREZGENE
	TTC29_MOUSE	UniProtKB/Swiss-Prot
UniProt Secondary	Q8CF30	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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