Cd34 (CD34 antigen) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Cd34 (CD34 antigen) Mus musculus
Analyze
Symbol: Cd34
Name: CD34 antigen
RGD ID: 1315724
MGI Page MGI
Description: Enables sulfate binding activity. Acts upstream of or within leukocyte migration. Located in cytoplasm; external side of plasma membrane; and extracellular region. Is expressed in several structures, including alimentary system; cardiovascular system; extraembryonic component; genitourinary system; and liver. Orthologous to human CD34 (CD34 molecule).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AU040960; cluster designation 34; hematopoietic progenitor cell antigen CD34
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391194,621,239 - 194,643,587 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1194,621,127 - 194,643,587 (+)EnsemblGRCm39 Ensembl
GRCm381194,938,821 - 194,961,292 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1194,938,819 - 194,961,279 (+)EnsemblGRCm38mm10GRCm38
MGSCv371196,765,015 - 196,787,486 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361196,639,632 - 196,662,003 (+)NCBIMGSCv36mm8
Celera1201,838,605 - 201,861,076 (+)NCBICelera
Cytogenetic Map1H6NCBI
cM Map198.38NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-amphetamine  (EXP)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (ISO)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (EXP,ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
3-chloropropane-1,2-diol  (ISO)
3-Nitrobenzanthrone  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (EXP)
4-hydroxyphenyl retinamide  (EXP,ISO)
5-fluorouracil  (EXP)
6-propyl-2-thiouracil  (ISO)
acetic acid  (EXP)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (EXP,ISO)
alpha-Zearalanol  (ISO)
aminoguanidine  (ISO)
antimycin A  (EXP)
antirheumatic drug  (ISO)
Aroclor 1254  (EXP)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
asbestos  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
bleomycin A2  (EXP)
bromochloroacetic acid  (EXP)
cadmium dichloride  (EXP)
cannabidiol  (EXP)
carbon nanotube  (EXP)
CGP 52608  (ISO)
chloroquine  (EXP)
chlorpyrifos  (EXP)
choline  (EXP)
chrysene  (EXP)
clothianidin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
crocidolite asbestos  (EXP)
Curcumol  (EXP)
daunorubicin  (ISO)
DDT  (ISO)
dextran sulfate  (EXP)
diarsenic trioxide  (ISO)
dibenz[a,h]anthracene  (EXP)
dioxygen  (ISO)
diquat  (EXP)
diuron  (ISO)
doxorubicin  (EXP,ISO)
endosulfan  (ISO)
erythromycin A  (ISO)
ethanol  (EXP,ISO)
Evodiamine  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
fulvestrant  (ISO)
isotretinoin  (ISO)
L-ascorbic acid  (ISO)
L-methionine  (EXP)
lidocaine  (ISO)
maneb  (ISO)
melphalan  (ISO)
mono(2-ethylhexyl) phthalate  (EXP)
nickel atom  (ISO)
omacetaxine mepesuccinate  (ISO)
orlistat  (ISO)
ozone  (EXP)
paracetamol  (EXP)
paraquat  (ISO)
perfluorooctanoic acid  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
pirinixic acid  (EXP)
prednisolone  (ISO)
Quinupristin-dalfopristin  (ISO)
resveratrol  (EXP)
rotenone  (EXP,ISO)
silicon dioxide  (ISO)
sodium arsenate  (EXP)
sodium arsenite  (EXP,ISO)
sunitinib  (EXP)
tebuconazole  (ISO)
tetrachloromethane  (EXP)
tetraphene  (EXP)
triclosan  (ISO)
valproic acid  (EXP)
valsartan  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
2. Repression of microRNA-21 inhibits retinal vascular endothelial cell growth and angiogenesis via PTEN dependent-PI3K/Akt/VEGF signaling pathway in diabetic retinopathy. Lu JM, etal., Exp Eye Res. 2020 Jan;190:107886. doi: 10.1016/j.exer.2019.107886. Epub 2019 Nov 21.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Nine Genes Mediate the Therapeutic Effects of Iodine-131 Radiotherapy in Thyroid Carcinoma Patients. Shuwen H, etal., Dis Markers. 2020 Jun 16;2020:9369341. doi: 10.1155/2020/9369341. eCollection 2020.
8. Requirement for p38alpha in erythropoietin expression: a role for stress kinases in erythropoiesis. Tamura K, etal., Cell 2000 Jul 21;102(2):221-31.
9. Arteriovenous malformations in mice lacking activin receptor-like kinase-1. Urness LD, etal., Nat Genet 2000 Nov;26(3):328-31.
10. Homeodomain factor Nkx2-3 controls regional expression of leukocyte homing coreceptor MAdCAM-1 in specialized endothelial cells of the viscera. Wang CC, etal., Dev Biol 2000 Aug 15;224(2):152-67.
Additional References at PubMed
PMID:1373970   PMID:1543915   PMID:1709048   PMID:1717362   PMID:7519070   PMID:7528578   PMID:7538181   PMID:7542195   PMID:7596435   PMID:8499630   PMID:8555469   PMID:8602242  
PMID:8611677   PMID:8652806   PMID:8822918   PMID:8889548   PMID:8916941   PMID:9058795   PMID:9310481   PMID:9324354   PMID:9365121   PMID:9367982   PMID:9472016   PMID:9754575  
PMID:9766450   PMID:9811585   PMID:10022836   PMID:10349636   PMID:10446940   PMID:10477673   PMID:10591182   PMID:10688823   PMID:10722749   PMID:10906457   PMID:10922068   PMID:10943840  
PMID:11032855   PMID:11042159   PMID:11076861   PMID:11121437   PMID:11217851   PMID:11435469   PMID:11566879   PMID:11747076   PMID:11804779   PMID:11807029   PMID:11927535   PMID:11937272  
PMID:11983914   PMID:12015303   PMID:12376567   PMID:12384153   PMID:12401212   PMID:12466851   PMID:12477932   PMID:12703978   PMID:12714519   PMID:12782625   PMID:12900455   PMID:12941632  
PMID:14567980   PMID:14597732   PMID:14612394   PMID:14634211   PMID:14673146   PMID:15166028   PMID:15489334   PMID:15530859   PMID:15533817   PMID:15548576   PMID:15644447   PMID:15664158  
PMID:15701716   PMID:15705793   PMID:15725743   PMID:15760903   PMID:15857912   PMID:15875024   PMID:15941859   PMID:16002709   PMID:16085486   PMID:16110324   PMID:16141072   PMID:16141073  
PMID:16287848   PMID:16607274   PMID:16809539   PMID:16818453   PMID:16824955   PMID:16880535   PMID:16901790   PMID:16920095   PMID:16926294   PMID:17121831   PMID:17276340   PMID:17317783  
PMID:17483328   PMID:17521240   PMID:17557898   PMID:17581618   PMID:17631058   PMID:17676644   PMID:17717145   PMID:17762938   PMID:17882221   PMID:18063572   PMID:18077429   PMID:18176565  
PMID:18243104   PMID:18258420   PMID:18287559   PMID:18554416   PMID:18617520   PMID:18684862   PMID:18849992   PMID:18931657   PMID:18981216   PMID:19145362   PMID:19261698   PMID:19303854  
PMID:19360001   PMID:19380799   PMID:19531353   PMID:19564597   PMID:19783739   PMID:19833765   PMID:19853564   PMID:20038636   PMID:20181261   PMID:20223757   PMID:20223988   PMID:20336138  
PMID:20382704   PMID:20386748   PMID:20489139   PMID:20497179   PMID:20679233   PMID:20696776   PMID:20980401   PMID:21206086   PMID:21246656   PMID:21267068   PMID:21435445   PMID:21464233  
PMID:21494591   PMID:21628453   PMID:21642249   PMID:21677750   PMID:21708977   PMID:21709251   PMID:21780244   PMID:21791606   PMID:21873635   PMID:21873977   PMID:21921238   PMID:21947380  
PMID:21997891   PMID:22032925   PMID:22129828   PMID:22230615   PMID:22387002   PMID:22495305   PMID:22510689   PMID:22558218   PMID:22585576   PMID:22763785   PMID:22771324   PMID:22801971  
PMID:22917924   PMID:22992803   PMID:23271346   PMID:23319349   PMID:23389444   PMID:23404453   PMID:23467409   PMID:23487314   PMID:23523683   PMID:23555902   PMID:23812634   PMID:23945586  
PMID:23946446   PMID:23954751   PMID:23973805   PMID:24012369   PMID:24222445   PMID:24269955   PMID:24336287   PMID:24418654   PMID:24700724   PMID:24760005   PMID:24805242   PMID:24982158  
PMID:25091710   PMID:25728702   PMID:25772358   PMID:25774501   PMID:25899394   PMID:25977369   PMID:26176759   PMID:26206421   PMID:26378152   PMID:26481065   PMID:26655331   PMID:26923665  
PMID:26984772   PMID:27306493   PMID:27352134   PMID:27396339   PMID:27432740   PMID:27542690   PMID:27543859   PMID:27666446   PMID:27687577   PMID:27917469   PMID:28031476   PMID:28074039  
PMID:28111199   PMID:28320871   PMID:28512199   PMID:28589954   PMID:28683207   PMID:28687623   PMID:28838957   PMID:28850257   PMID:29106382   PMID:29118970   PMID:29237738   PMID:29773646  
PMID:29853539   PMID:30232223   PMID:30348676   PMID:30503141   PMID:30523048   PMID:30886049   PMID:30936179   PMID:31012985   PMID:31112136   PMID:31475747   PMID:31524221   PMID:31562240  
PMID:31570606   PMID:31591456   PMID:31863798   PMID:31961320   PMID:31972158   PMID:32027977   PMID:32068311   PMID:32201259   PMID:32402290   PMID:32415669   PMID:32457985   PMID:32471820  
PMID:32492036   PMID:32700121   PMID:33130914   PMID:33253203   PMID:33632209   PMID:33707780   PMID:33931446   PMID:34107258   PMID:34474592   PMID:34850819   PMID:34880220   PMID:35042002  
PMID:35264563   PMID:35358427   PMID:35478971   PMID:35653588   PMID:35905741   PMID:36045707   PMID:36205368   PMID:36227697   PMID:36318802   PMID:36441651   PMID:36619982   PMID:36697821  
PMID:36791722   PMID:37047400   PMID:37160119   PMID:37647896   PMID:38374152   PMID:38490977   PMID:38580775   PMID:38923264   PMID:39056292   PMID:39351282   PMID:39361422  


Genomics

Comparative Map Data
Cd34
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391194,621,239 - 194,643,587 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1194,621,127 - 194,643,587 (+)EnsemblGRCm39 Ensembl
GRCm381194,938,821 - 194,961,292 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1194,938,819 - 194,961,279 (+)EnsemblGRCm38mm10GRCm38
MGSCv371196,765,015 - 196,787,486 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361196,639,632 - 196,662,003 (+)NCBIMGSCv36mm8
Celera1201,838,605 - 201,861,076 (+)NCBICelera
Cytogenetic Map1H6NCBI
cM Map198.38NCBI
CD34
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381207,880,972 - 207,911,125 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1207,880,972 - 207,911,402 (-)EnsemblGRCh38hg38GRCh38
GRCh371208,054,317 - 208,084,470 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361206,126,506 - 206,151,306 (-)NCBINCBI36Build 36hg18NCBI36
Build 341204,448,278 - 204,472,910NCBI
Celera1181,290,338 - 181,315,139 (-)NCBICelera
Cytogenetic Map1q32.2NCBI
HuRef1178,734,078 - 178,758,883 (-)NCBIHuRef
CHM1_11209,332,232 - 209,357,037 (-)NCBICHM1_1
T2T-CHM13v2.01207,127,718 - 207,157,876 (-)NCBIT2T-CHM13v2.0
Cd34
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr813109,008,786 - 109,029,317 (+)NCBIGRCr8
mRatBN7.213106,480,313 - 106,500,844 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl13106,480,043 - 106,499,832 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx13108,997,703 - 109,016,794 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.013110,381,536 - 110,400,621 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.013107,606,042 - 107,625,155 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.013113,691,842 - 113,711,259 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13113,691,932 - 113,711,647 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013118,531,837 - 118,551,216 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.413110,877,594 - 110,896,722 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera13105,904,553 - 105,923,681 (+)NCBICelera
Cytogenetic Map13q27NCBI
Cd34
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540643,117,816 - 43,130,463 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540643,116,688 - 43,130,405 (-)NCBIChiLan1.0ChiLan1.0
CD34
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2141,488,237 - 41,513,064 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1141,454,311 - 41,479,145 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01183,459,028 - 183,489,583 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11188,272,551 - 188,297,384 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1188,272,551 - 188,297,384 (-)Ensemblpanpan1.1panPan2
CD34
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.176,734,363 - 6,747,991 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl76,734,363 - 6,748,581 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha76,297,083 - 6,321,394 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.076,422,992 - 6,447,293 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl76,422,992 - 6,447,293 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.176,355,774 - 6,380,048 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.076,458,250 - 6,482,488 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.076,499,295 - 6,523,438 (-)NCBIUU_Cfam_GSD_1.0
Cd34
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934467,790,294 - 67,811,581 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365575,030,441 - 5,051,868 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365575,030,788 - 5,051,864 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD34
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9134,913,121 - 134,937,762 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19134,912,793 - 134,937,763 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29148,445,995 - 148,470,638 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CD34
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12521,534,969 - 21,559,951 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2521,534,983 - 21,561,215 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605522,145,967 - 22,170,846 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cd34
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248073,936,028 - 3,957,249 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248073,936,043 - 3,958,274 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cd34
732 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1082
Count of miRNA genes:392
Interacting mature miRNAs:471
Transcripts:ENSMUST00000016638, ENSMUST00000110815
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1558802Skmw6_mskeletal muscle weight 6 (mouse)Not determined1167954584195154279Mouse
1301652Cpfd2_mcerebellum pattern fissures (mouse)Not determined1172303451195154279Mouse
1559024Zit1_mzinc induced tolerance 1 (mouse)Not determined1167462514195154279Mouse
1301339Hdlq15_mHDL QTL 15 (mouse)Not determined1165873675195154279Mouse
12880429V25Dq1_mvitamin D inactive form serum level QTL 1 (mouse)1172632197195154279Mouse
10043863Swrl5_mSWR lupus locus 5 (mouse)Not determined1172303451195154279Mouse
12880426V25Dq2_mvitamin D inactive form serum level QTL 2 (mouse)1172532197195154279Mouse
11049575Lmr8b_mleishmaniasis resistance 8b (mouse)1172303451195154279Mouse
1357732Tbbmd1_mtotal body bone mineral density 1 (mouse)Not determined1171983110195154279Mouse
1301251Scc3_mcolon tumor susceptibility 3 (mouse)Not determined1168213823195154279Mouse
1301632Bw8q1_mbody weight at 8 weeks QTL 1 (mouse)Not determined1161201261195154279Mouse
1302023Orch4_mautoimmune orchitis resistance 4 (mouse)Not determined1175211318195154279Mouse
4141483Femwf7_mfemur work to failure 7 (mouse)Not determined167462514195154279Mouse
1302158Fembrs5_mfemur breaking strength 5 (mouse)Not determined1167462514195154279Mouse
1301132Mors1_mmodifier of obesity related sterility 1 (mouse)Not determined1170379500195154279Mouse

Markers in Region
AU040960  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381194,960,915 - 194,961,002UniSTSGRCm38
MGSCv371196,787,109 - 196,787,196UniSTSGRCm37
Celera1201,860,699 - 201,860,786UniSTS
Cytogenetic Map1H6UniSTS
cM Map1106.6UniSTS
Whitehead/MRC_RH12473.86UniSTS
Cd34  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381194,947,850 - 194,949,463UniSTSGRCm38
MGSCv371196,774,044 - 196,775,657UniSTSGRCm37
Celera1201,847,634 - 201,849,247UniSTS
Cytogenetic Map1H6UniSTS
cM Map1106.6UniSTS
px-38e3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4D1UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map18D3UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map17B3UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map16B5UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map7F2UniSTS
Cytogenetic Map10D2UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic MapYA1UniSTS
Cytogenetic Map11A3.2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map10D1UniSTS
Cytogenetic Map10A1UniSTS
cM Map1060.0UniSTS
cM Map1106.6UniSTS
cM Map1936.5UniSTS
cM Map520.0UniSTS
cM Map1340.0UniSTS
Cd34  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1H6UniSTS
cM Map1106.6UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001111059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_133654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC162692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK089010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL513470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AV319386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC006607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC066820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU058977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY249301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY327943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CS104352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S69293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S69295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S69299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S69301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U49383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000016638   ⟹   ENSMUSP00000016638
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1194,621,127 - 194,643,587 (+)Ensembl
GRCm38.p6 Ensembl1194,938,819 - 194,961,279 (+)Ensembl
Ensembl Acc Id: ENSMUST00000110815   ⟹   ENSMUSP00000106439
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1194,621,183 - 194,643,587 (+)Ensembl
GRCm38.p6 Ensembl1194,938,875 - 194,961,279 (+)Ensembl
Ensembl Acc Id: ENSMUST00000194036   ⟹   ENSMUSP00000141884
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1194,621,303 - 194,640,858 (+)Ensembl
GRCm38.p6 Ensembl1194,938,995 - 194,958,550 (+)Ensembl
Ensembl Acc Id: ENSMUST00000194458
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1194,621,213 - 194,633,069 (+)Ensembl
GRCm38.p6 Ensembl1194,938,905 - 194,950,761 (+)Ensembl
Ensembl Acc Id: ENSMUST00000195092
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1194,621,259 - 194,623,537 (+)Ensembl
GRCm38.p6 Ensembl1194,938,951 - 194,941,229 (+)Ensembl
RefSeq Acc Id: NM_001111059   ⟹   NP_001104529
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391194,621,239 - 194,643,587 (+)NCBI
GRCm381194,938,821 - 194,961,292 (+)ENTREZGENE
MGSCv371196,765,015 - 196,787,486 (+)RGD
Celera1201,838,605 - 201,861,076 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_133654   ⟹   NP_598415
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391194,621,239 - 194,643,587 (+)NCBI
GRCm381194,938,821 - 194,961,292 (+)ENTREZGENE
MGSCv371196,765,015 - 196,787,486 (+)RGD
Celera1201,838,605 - 201,861,076 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_598415   ⟸   NM_133654
- Peptide Label: isoform 2 precursor
- UniProtKB: Q62550 (UniProtKB/Swiss-Prot),   Q62551 (UniProtKB/Swiss-Prot),   Q64314 (UniProtKB/Swiss-Prot),   Q543B6 (UniProtKB/TrEMBL),   Q8C2A1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001104529   ⟸   NM_001111059
- Peptide Label: isoform 1 precursor
- UniProtKB: Q543Y2 (UniProtKB/TrEMBL),   Q3TJP6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000106439   ⟸   ENSMUST00000110815
Ensembl Acc Id: ENSMUSP00000141884   ⟸   ENSMUST00000194036
Ensembl Acc Id: ENSMUSP00000016638   ⟸   ENSMUST00000016638

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q64314-F1-model_v2 AlphaFold Q64314 1-382 view protein structure

Promoters
RGD ID:6876182
Promoter ID:EPDNEW_M1542
Type:initiation region
Name:Cd34_1
Description:Mus musculus CD34 antigen , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381194,938,877 - 194,938,937EPDNEW
RGD ID:6876184
Promoter ID:EPDNEW_M1543
Type:initiation region
Name:AK158452_1
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381194,938,944 - 194,939,004EPDNEW
RGD ID:6817484
Promoter ID:MM_KWN:3378
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Lung
Transcripts:NM_001111059,   NM_133654
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361196,764,959 - 196,765,459 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:88329 AgrOrtholog
Ensembl Genes ENSMUSG00000016494 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000016638 ENTREZGENE
  ENSMUST00000016638.8 UniProtKB/Swiss-Prot
  ENSMUST00000110815 ENTREZGENE
  ENSMUST00000110815.9 UniProtKB/Swiss-Prot
  ENSMUST00000194036.2 UniProtKB/TrEMBL
InterPro CD34 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CD34/Podocalyxin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12490 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:88329 ENTREZGENE
NCBI Gene 12490 ENTREZGENE
PANTHER HEMATOPOIETIC PROGENITOR CELL ANTIGEN CD34 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR16677 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CD34_antigen UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cd34 PhenoGen
PRINTS CD34ANTIGEN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0A6YX84_MOUSE UniProtKB/TrEMBL
  A2NKF8_MOUSE UniProtKB/TrEMBL
  CD34_MOUSE UniProtKB/Swiss-Prot
  Q3TJP6 ENTREZGENE, UniProtKB/TrEMBL
  Q543B6 ENTREZGENE, UniProtKB/TrEMBL
  Q543Y2 ENTREZGENE, UniProtKB/TrEMBL
  Q62550 ENTREZGENE
  Q62551 ENTREZGENE
  Q64314 ENTREZGENE
  Q8C2A1 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary Q62550 UniProtKB/Swiss-Prot
  Q62551 UniProtKB/Swiss-Prot