USP53 (ubiquitin specific peptidase 53) - Rat Genome Database

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Gene: USP53 (ubiquitin specific peptidase 53) Homo sapiens
Analyze
Symbol: USP53
Name: ubiquitin specific peptidase 53
RGD ID: 1315332
HGNC Page HGNC:29255
Description: Enables K63-linked deubiquitinase activity. Predicted to be involved in response to auditory stimulus and sensory perception of sound. Predicted to act upstream of or within action potential; epithelial cell apoptotic process; and outer hair cell apoptotic process. Located in bicellular tight junction. Implicated in progressive familial intrahepatic cholestasis.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: DKFZp781E1417; inactive ubiquitin carboxyl-terminal hydrolase 53; inactive ubiquitin-specific peptidase 53; PFIC7; ubiquitin specific protease 53; ubiquitin specific proteinase 53
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384119,212,601 - 119,295,518 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4119,212,587 - 119,295,518 (+)EnsemblGRCh38hg38GRCh38
GRCh374120,133,868 - 120,216,673 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364120,353,230 - 120,436,121 (+)NCBINCBI36Build 36hg18NCBI36
Celera4117,495,374 - 117,578,263 (+)NCBICelera
Cytogenetic Map4q26NCBI
HuRef4115,855,506 - 115,938,506 (+)NCBIHuRef
CHM1_14120,110,269 - 120,193,235 (+)NCBICHM1_1
T2T-CHM13v2.04122,517,672 - 122,600,620 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 20 of 23 rows
Object Symbol
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Original Reference(s)
USP53Humancholestasis  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: CholestasisClinVarPMID:25741868 and PMID:34608165
USP53Humancholestasis  IAGP (Homo sapiens) and (Homo sapiens)8554872ClinVar Annotator: match by term: CholestasisClinVarPMID:25741868 and PMID:32124521
USP53Humancholestasis  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: CholestasisClinVarPMID:25741868
USP53Humancholestasis  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: CholestasisClinVarPMID:25741868 more ...
USP53Humangenetic disease  IAGP (Homo sapiens) and (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868
USP53Humangenetic disease  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:28492532
USP53Humangenetic disease  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868 more ...
USP53Humangenetic disease  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVar 
USP53HumanNeurodevelopmental Disorders  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Neurodevelopmental disorderClinVarPMID:25741868
USP53Humanprimary ovarian insufficiency  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Premature ovarian insufficiencyClinVarPMID:25741868 and PMID:28492532
USP53Humanprogressive familial intrahepatic cholestasis 4  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Cholestasis more ...ClinVarPMID:25741868 more ...
USP53HumanProgressive Familial Intrahepatic Cholestasis 7  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Cholestasis more ...ClinVar 
USP53HumanProgressive Familial Intrahepatic Cholestasis 7  IAGP (Homo sapiens) and (Homo sapiens)8554872ClinVar Annotator: match by term: Cholestasis more ...ClinVarPMID:25741868 more ...
USP53HumanProgressive Familial Intrahepatic Cholestasis 7  IAGP (Homo sapiens) and (Homo sapiens)8554872ClinVar Annotator: match by term: Cholestasis more ...ClinVarPMID:25741868 and PMID:32124521
USP53HumanProgressive Familial Intrahepatic Cholestasis 7  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Cholestasis more ...ClinVarPMID:25741868 more ...
USP53HumanProgressive Familial Intrahepatic Cholestasis 7  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Cholestasis more ...ClinVarPMID:17576681 more ...
USP53HumanProgressive Familial Intrahepatic Cholestasis 7  IAGP (Homo sapiens) and (Homo sapiens)8554872ClinVar Annotator: match by term: USP53-related conditionClinVarPMID:28492532
USP53HumanProgressive Familial Intrahepatic Cholestasis 7  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Cholestasis more ...ClinVarPMID:25741868 and PMID:34608165
USP53HumanProgressive Familial Intrahepatic Cholestasis 7  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Cholestasis more ...ClinVarPMID:25741868 and PMID:33075013
USP53HumanProgressive Familial Intrahepatic Cholestasis 7  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Cholestasis more ...ClinVarPMID:33075013
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Original Reference(s)
USP53HumanProgressive Familial Intrahepatic Cholestasis 7  IAGP 7240710 OMIM 

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Original Reference(s)
USP53Human(1->4)-beta-D-glucan multiple interactionsISOUsp53 (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of USP53 mRNACTDPMID:36331819
USP53Human1,2-dimethylhydrazine decreases expressionISOUsp53 (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of USP53 mRNACTDPMID:22206623
USP53Human2,2',4,4'-Tetrabromodiphenyl ether increases expressionEXP 64804642 more ...CTDPMID:31173147
USP53Human2,2',5,5'-tetrachlorobiphenyl decreases expressionEXP 64804642 more ...CTDPMID:36804509
USP53Human2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of USP53 mRNACTDPMID:20106945
USP53Human2,3,7,8-tetrachlorodibenzodioxine increases expressionISOUsp53 (Rattus norvegicus)6480464Tetrachlorodibenzodioxin results in increased expression of USP53 mRNACTDPMID:33387578
USP53Human2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of USP53 mRNACTDPMID:22574217
USP53Human2,3,7,8-tetrachlorodibenzodioxine affects expressionISOUsp53 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of USP53 mRNACTDPMID:21570461 and PMID:28213091
USP53Human2,3,7,8-tetrachlorodibenzodioxine increases expressionISOUsp53 (Mus musculus)6480464Tetrachlorodibenzodioxin results in increased expression of USP53 mRNACTDPMID:18691609
USP53Human3,4-methylenedioxymethamphetamine decreases expressionISOUsp53 (Mus musculus)6480464N-Methyl-3 and 4-methylenedioxyamphetamine results in decreased expression of USP53 mRNACTDPMID:26251327
USP53Human3-isobutyl-1-methyl-7H-xanthine multiple interactionsEXP 6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in increased expression of USP53 mRNA and [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in increased expression of USP53 mRNACTDPMID:28628672
USP53Human4,4'-diaminodiphenylmethane decreases expressionISOUsp53 (Rattus norvegicus)64804644 and 4'-diaminodiphenylmethane results in decreased expression of USP53 mRNACTDPMID:30723492
USP53Human4,4'-sulfonyldiphenol multiple interactionsEXP 6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in increased expression of USP53 mRNACTDPMID:28628672
USP53Human4,4'-sulfonyldiphenol increases expressionISOUsp53 (Mus musculus)6480464bisphenol S results in increased expression of USP53 mRNACTDPMID:30951980 and PMID:39298647
USP53Human4-hydroxyphenyl retinamide increases expressionISOUsp53 (Mus musculus)6480464Fenretinide results in increased expression of USP53 mRNACTDPMID:28973697
USP53Humanacrylamide increases expressionISOUsp53 (Rattus norvegicus)6480464Acrylamide results in increased expression of USP53 mRNACTDPMID:28959563
USP53Humanaflatoxin B1 decreases methylationEXP 6480464Aflatoxin B1 results in decreased methylation of USP53 geneCTDPMID:27153756
USP53Humanall-trans-retinoic acid increases expressionEXP 6480464Tretinoin results in increased expression of USP53 mRNACTDPMID:21934132
USP53Humanarsenite(3-) multiple interactionsEXP 6480464arsenite inhibits the reaction [G3BP1 protein binds to USP53 mRNA]CTDPMID:32406909
USP53Humanbenzo[a]pyrene affects methylationEXP 6480464Benzo(a)pyrene affects the methylation of USP53 promoterCTDPMID:27901495

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Biological Process
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Original Reference(s)
USP53Humanaction potential acts_upstream_of_or_withinIEAUniProtKB:P15975 and ensembl:ENSMUSP00000087857150520179 EnsemblGO_REF:0000107
USP53Humanepithelial cell apoptotic process acts_upstream_of_or_withinIEAUniProtKB:P15975 and ensembl:ENSMUSP00000087857150520179 EnsemblGO_REF:0000107
USP53Humanneuron apoptotic process acts_upstream_of_or_withinIEAUniProtKB:P15975 and ensembl:ENSMUSP00000087857150520179 EnsemblGO_REF:0000107
USP53Humanouter hair cell apoptotic process acts_upstream_of_or_withinIEAUniProtKB:P15975 and ensembl:ENSMUSP00000087857150520179 EnsemblGO_REF:0000107
USP53Humanprotein deubiquitination NOT|acts_upstream_of_or_withinISOUsp53 (Mus musculus)9068941 PMID:26609154MGIPMID:26609154
USP53Humanprotein deubiquitination involved_inIEAInterPro:IPR001394150520179 InterProGO_REF:0000002
USP53Humanresponse to auditory stimulus involved_inIBAMGI:2139607 and PANTHER:PTN002743584150520179 GO_CentralGO_REF:0000033
USP53Humanresponse to auditory stimulus acts_upstream_of_or_withinIEAUniProtKB:P15975 and ensembl:ENSMUSP00000087857150520179 EnsemblGO_REF:0000107
USP53Humansensory perception of sound involved_inIBAMGI:2139607 and PANTHER:PTN002743584150520179 GO_CentralGO_REF:0000033
USP53Humansensory perception of sound acts_upstream_of_or_withinIEAUniProtKB:P15975 and ensembl:ENSMUSP00000087857150520179 EnsemblGO_REF:0000107
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Cellular Component

  
Object Symbol
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Original Reference(s)
USP53Humananchoring junction located_inIEAUniProtKB-KW:KW-0965150520179 UniProtGO_REF:0000043
USP53Humanbicellular tight junction located_inIMP 150520179 PMID:32124521UniProtPMID:32124521
USP53Humanbicellular tight junction located_inIEAUniProtKB-SubCell:SL-0265150520179 UniProtGO_REF:0000044
USP53Humanbicellular tight junction located_inIEAUniProtKB-KW:KW-0796150520179 UniProtGO_REF:0000043
USP53Humancell-cell junction located_inIEAUniProtKB:P15975 and ensembl:ENSMUSP00000087857150520179 EnsemblGO_REF:0000107
USP53Humancell-cell junction is_active_inIBAMGI:2139607 more ...150520179 GO_CentralGO_REF:0000033

Molecular Function

  

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Original Reference(s)
USP53HumanAutosomal recessive inheritance  IAGP 8699517 HPOMIM:619658 and PMID:30250217
USP53HumanChildhood onset  IAGP 8699517 HPOMIM:619658 and PMID:33075013
USP53HumanCholestasis  IAGP 8699517 HPOMIM:619658 and PMID:33075013
USP53HumanElevated circulating alanine aminotransferase concentration  IAGP 8699517 HPOMIM:619658 and PMID:30250217
USP53HumanElevated circulating alkaline phosphatase concentration  IAGP 8699517 HPOMIM:619658 and PMID:30250217
USP53HumanElevated circulating aspartate aminotransferase concentration  IAGP 8699517 HPOMIM:619658 and PMID:30250217
USP53HumanElevated circulating gamma-aminobutyric acid concentration  IAGP 8699517 HPOMIM:619658 and PMID:33075013
USP53HumanHearing impairment  IAGP 8699517 HPOMIM:619658 and PMID:30250217
USP53HumanHepatic bridging fibrosis  IAGP 8699517 HPOMIM:619658 and PMID:33075013
USP53HumanHepatic fibrosis  IAGP 8699517 HPOMIM:619658 and PMID:33075013
USP53HumanHypocalcemia  IAGP 8699517 HPOMIM:619658 and PMID:30250217
USP53HumanInfantile onset  IAGP 8699517 HPOMIM:619658 more ...
USP53HumanJaundice  IAGP 8699517 HPOMIM:619658 and PMID:33075013
USP53HumanJuvenile onset  IAGP 8699517 HPOMIM:619658 and PMID:33075013
USP53HumanNeonatal onset  IAGP 8699517 HPOMIM:619658 and PMID:33075013
USP53HumanPruritus  IAGP 8699517 HPOMIM:619658 and PMID:30250217
USP53HumanSplenomegaly  IAGP 8699517 HPOMIM:619658 and PMID:33075013
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1 to 12 of 12 rows
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Original Reference(s)
USP53HumanCholestasis  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: CholestasisClinVarPMID:25741868 and PMID:32124521
USP53HumanCholestasis  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: CholestasisClinVarPMID:25741868 more ...
USP53HumanCholestasis  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: CholestasisClinVarPMID:25741868
USP53HumanCholestasis  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: CholestasisClinVarPMID:25741868
USP53HumanCholestasis  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: CholestasisClinVarPMID:25741868
USP53HumanCholestasis  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: CholestasisClinVarPMID:25741868
USP53HumanCholestasis  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: CholestasisClinVarPMID:25741868
USP53HumanCholestasis  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: CholestasisClinVarPMID:25741868 and PMID:34608165
USP53HumanCholestasis  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: CholestasisClinVarPMID:25741868 and PMID:32124521
USP53HumanPremature ovarian insufficiency  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Premature ovarian insufficiencyClinVarPMID:25741868 and PMID:28492532
USP53HumanPremature ovarian insufficiency  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Premature ovarian insufficiencyClinVarPMID:25741868 and PMID:28492532
USP53HumanPremature ovarian insufficiency  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Premature ovarian insufficiencyClinVarPMID:25741868 and PMID:28492532
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#
Reference Title
Reference Citation
1. Cloning and enzymatic analysis of 22 novel human ubiquitin-specific proteases. Quesada V, etal., Biochem Biophys Res Commun 2004 Jan 30;314(1):54-62.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:10718198   PMID:12477932   PMID:14702039   PMID:15489334   PMID:15851553   PMID:16189514   PMID:16344560   PMID:19615732   PMID:20332099   PMID:20936779   PMID:21873635   PMID:21988832  
PMID:23159851   PMID:23322567   PMID:25416956   PMID:26871637   PMID:27107012   PMID:28611215   PMID:28718761   PMID:29117863   PMID:29119051   PMID:29576527   PMID:29669287   PMID:30323974  
PMID:30639242   PMID:32124521   PMID:32296183   PMID:32508265   PMID:32511815   PMID:32759993   PMID:33075013   PMID:33664230   PMID:33961781   PMID:33973730   PMID:34079125   PMID:34919659  
PMID:35044719   PMID:35654790   PMID:35927303   PMID:36108118   PMID:36239338   PMID:36379255   PMID:36931259   PMID:37499664   PMID:37689310   PMID:38334954   PMID:39587316  



USP53
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384119,212,601 - 119,295,518 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4119,212,587 - 119,295,518 (+)EnsemblGRCh38hg38GRCh38
GRCh374120,133,868 - 120,216,673 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364120,353,230 - 120,436,121 (+)NCBINCBI36Build 36hg18NCBI36
Celera4117,495,374 - 117,578,263 (+)NCBICelera
Cytogenetic Map4q26NCBI
HuRef4115,855,506 - 115,938,506 (+)NCBIHuRef
CHM1_14120,110,269 - 120,193,235 (+)NCBICHM1_1
T2T-CHM13v2.04122,517,672 - 122,600,620 (+)NCBIT2T-CHM13v2.0
Usp53
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393122,725,142 - 122,778,184 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3122,725,142 - 122,778,159 (-)EnsemblGRCm39 Ensembl
GRCm383122,931,486 - 122,984,900 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3122,931,493 - 122,984,510 (-)EnsemblGRCm38mm10GRCm38
MGSCv373122,636,519 - 122,687,365 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363122,925,623 - 122,976,469 (-)NCBIMGSCv36mm8
Celera3129,344,003 - 129,395,480 (-)NCBICelera
Cytogenetic Map3G1NCBI
cM Map353.75NCBI
Usp53
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82213,744,106 - 213,805,619 (-)NCBIGRCr8
mRatBN7.22211,059,512 - 211,120,942 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2211,059,520 - 211,120,943 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2218,737,119 - 218,798,537 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02216,644,894 - 216,706,326 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02211,491,226 - 211,552,659 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02227,098,795 - 227,160,385 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2227,098,795 - 227,160,379 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02246,460,175 - 246,521,772 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42219,620,238 - 219,681,958 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12219,585,547 - 219,629,826 (-)NCBI
Celera2203,488,517 - 203,550,236 (-)NCBICelera
Cytogenetic Map2q42NCBI
Usp53
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542820,957,807 - 21,023,380 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542820,957,807 - 21,023,380 (-)NCBIChiLan1.0ChiLan1.0
USP53
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23116,995,738 - 117,072,253 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14117,292,627 - 117,369,139 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04111,407,037 - 111,483,541 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14121,957,504 - 122,033,818 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4121,984,659 - 122,031,531 (+)Ensemblpanpan1.1panPan2
USP53
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13238,148,120 - 38,213,370 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3238,163,790 - 38,211,181 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha323,861,879 - 3,927,111 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03238,369,269 - 38,434,855 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3238,369,244 - 38,434,063 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13238,391,722 - 38,456,913 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03238,115,130 - 38,180,517 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0321,619,003 - 1,684,079 (-)NCBIUU_Cfam_GSD_1.0
Usp53
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530167,302,621 - 67,341,059 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936869167,337 - 226,314 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936869169,118 - 226,495 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
USP53
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8104,500,252 - 104,560,513 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18104,500,204 - 104,560,711 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28112,155,287 - 112,216,729 (-)NCBISscrofa10.2Sscrofa10.2susScr3
USP53
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1766,698,816 - 66,775,650 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl766,724,297 - 66,773,354 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603745,558,490 - 45,639,801 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

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Variants in USP53
166 total Variants

1 to 10 of 209 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh38/hg38 4q26-35.2(chr4:118065569-190042639)x3 copy number gain See cases [RCV000051785] Chr4:118065569..190042639 [GRCh38]
Chr4:118986724..190828225 [GRCh37]
Chr4:119206172..191200788 [NCBI36]
Chr4:4q26-35.2
pathogenic
GRCh38/hg38 4q22.2-32.3(chr4:92913386-165299707)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051775]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051775]|See cases [RCV000051775] Chr4:92913386..165299707 [GRCh38]
Chr4:93834537..166220859 [GRCh37]
Chr4:94053560..166440309 [NCBI36]
Chr4:4q22.2-32.3
pathogenic
GRCh38/hg38 4q22.3-28.3(chr4:96092893-136410207)x3 copy number gain See cases [RCV000051776] Chr4:96092893..136410207 [GRCh38]
Chr4:97014044..137331362 [GRCh37]
Chr4:97233067..137550812 [NCBI36]
Chr4:4q22.3-28.3
pathogenic
GRCh38/hg38 4q26-31.21(chr4:116630862-145429900)x1 copy number loss See cases [RCV000053321] Chr4:116630862..145429900 [GRCh38]
Chr4:117552018..146351052 [GRCh37]
Chr4:117771466..146570502 [NCBI36]
Chr4:4q26-31.21
pathogenic
NM_019050.2(USP53):c.400C>T (p.His134Tyr) single nucleotide variant Malignant melanoma [RCV000060904] Chr4:119256273 [GRCh38]
Chr4:120177428 [GRCh37]
Chr4:120396876 [NCBI36]
Chr4:4q26
not provided
GRCh38/hg38 4q26-27(chr4:118360303-120924156)x1 copy number loss See cases [RCV000138837] Chr4:118360303..120924156 [GRCh38]
Chr4:119281458..121845311 [GRCh37]
Chr4:119500906..122064761 [NCBI36]
Chr4:4q26-27
pathogenic
GRCh38/hg38 4q26(chr4:116090996-119545165)x1 copy number loss See cases [RCV000138236] Chr4:116090996..119545165 [GRCh38]
Chr4:117012152..120466320 [GRCh37]
Chr4:117231601..120685768 [NCBI36]
Chr4:4q26
likely pathogenic
GRCh38/hg38 4q26(chr4:118858868-119856165)x3 copy number gain See cases [RCV000139232] Chr4:118858868..119856165 [GRCh38]
Chr4:119780023..120777320 [GRCh37]
Chr4:119999471..120996768 [NCBI36]
Chr4:4q26
likely benign
GRCh38/hg38 4q26-28.3(chr4:117351881-133565667)x1 copy number loss See cases [RCV000143207] Chr4:117351881..133565667 [GRCh38]
Chr4:118273037..134486822 [GRCh37]
Chr4:118492485..134706272 [NCBI36]
Chr4:4q26-28.3
pathogenic
GRCh37/hg19 4q26-35.2(chr4:119437495-190904301)x3 copy number gain See cases [RCV000240392] Chr4:119437495..190904301 [GRCh37]
Chr4:4q26-35.2
pathogenic
1 to 10 of 209 rows

Predicted Target Of
Summary Value
Count of predictions:3136
Count of miRNA genes:940
Interacting mature miRNAs:1118
Transcripts:ENST00000274030, ENST00000450251, ENST00000507597, ENST00000507906, ENST00000509769, ENST00000510737, ENST00000510852, ENST00000514305, ENST00000514665
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 10 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597316090GWAS1412164_HBMI-adjusted waist circumference QTL GWAS1412164 (human)2e-11body size trait (VT:0100005)4119213641119213642Human
1643256BW127_HBody Weight QTL 127 (human)1.310.007Body weightbody mass index4106319694132319694Human
597476653GWAS1572727_Happendicular lean mass QTL GWAS1572727 (human)7e-22appendicular lean mass4119221151119221152Human
597081095GWAS1177169_Hneutrophil count QTL GWAS1177169 (human)1e-11neutrophil quantity (VT:0000222)blood neutrophil count (CMO:0000030)4119234651119234652Human
406917890GWAS566866_HAstigmatism QTL GWAS566866 (human)0.000009Astigmatism4119266456119266457Human
597291773GWAS1387847_HBMI-adjusted waist-hip ratio QTL GWAS1387847 (human)5e-11body size trait (VT:0100005)4119213641119213642Human
597244940GWAS1341014_HBMI-adjusted waist-hip ratio QTL GWAS1341014 (human)2e-10body size trait (VT:0100005)4119213641119213642Human
597214897GWAS1310971_Hbody mass index QTL GWAS1310971 (human)2e-09body mass indexbody mass index (BMI) (CMO:0000105)4119292875119292876Human
597223730GWAS1319804_HBMI-adjusted waist circumference QTL GWAS1319804 (human)4e-11body size trait (VT:0100005)4119213641119213642Human
597174439GWAS1270513_Hbody mass index QTL GWAS1270513 (human)8e-11body mass indexbody mass index (BMI) (CMO:0000105)4119292875119292876Human

1 to 10 of 10 rows
D4S402  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374120,148,183 - 120,148,403UniSTSGRCh37
GRCh374120,148,181 - 120,148,477UniSTSGRCh37
Build 364120,367,629 - 120,367,925RGDNCBI36
Celera4117,509,773 - 117,510,069RGD
Celera4117,509,775 - 117,509,995UniSTS
Cytogenetic Map4q26UniSTS
Marshfield Genetic Map4124.45RGD
Marshfield Genetic Map4124.45UniSTS
Genethon Genetic Map4123.5UniSTS
TNG Radiation Hybrid Map473797.0UniSTS
deCODE Assembly Map4122.1UniSTS
GeneMap99-GB4 RH Map4556.93UniSTS
Whitehead-YAC Contig Map4 UniSTS
NCBI RH Map41251.6UniSTS
RH45125  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374120,216,391 - 120,216,582UniSTSGRCh37
Build 364120,435,839 - 120,436,030RGDNCBI36
Celera4117,577,981 - 117,578,172RGD
Cytogenetic Map4q26UniSTS
HuRef4115,938,222 - 115,938,415UniSTS
GeneMap99-GB4 RH Map4546.39UniSTS
NCBI RH Map41251.6UniSTS
RH16578  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374120,184,626 - 120,184,750UniSTSGRCh37
Build 364120,404,074 - 120,404,198RGDNCBI36
Celera4117,546,221 - 117,546,345RGD
Cytogenetic Map4q26UniSTS
HuRef4115,906,491 - 115,906,615UniSTS
GeneMap99-GB4 RH Map4545.92UniSTS
RH99090  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374120,215,487 - 120,215,566UniSTSGRCh37
Build 364120,434,935 - 120,435,014RGDNCBI36
Celera4117,577,077 - 117,577,156RGD
Cytogenetic Map4q26UniSTS
HuRef4115,937,318 - 115,937,397UniSTS
GeneMap99-GB4 RH Map4546.39UniSTS
SHGC-14338  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374120,150,716 - 120,150,832UniSTSGRCh37
Build 364120,370,164 - 120,370,280RGDNCBI36
Celera4117,512,308 - 117,512,424RGD
Cytogenetic Map4q26UniSTS
HuRef4115,872,700 - 115,872,816UniSTS
TNG Radiation Hybrid Map473804.0UniSTS
SHGC-33542  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374120,184,604 - 120,184,753UniSTSGRCh37
Build 364120,404,052 - 120,404,201RGDNCBI36
Celera4117,546,199 - 117,546,348RGD
Cytogenetic Map4q26UniSTS
HuRef4115,906,469 - 115,906,618UniSTS
TNG Radiation Hybrid Map473744.0UniSTS
GeneMap99-GB4 RH Map4546.39UniSTS
Whitehead-RH Map4597.7UniSTS
NCBI RH Map41251.6UniSTS
GeneMap99-G3 RH Map46699.0UniSTS
SHGC-67633  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374120,158,462 - 120,158,638UniSTSGRCh37
Build 364120,377,910 - 120,378,086RGDNCBI36
Celera4117,520,054 - 117,520,230RGD
Cytogenetic Map4q26UniSTS
HuRef4115,880,446 - 115,880,622UniSTS
GeneMap99-GB4 RH Map4546.39UniSTS
NCBI RH Map41251.6UniSTS
D15S1390  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map19q13.33UniSTS
Cytogenetic Map10q26.3UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map17q21.33UniSTS
Cytogenetic Map18q11.2UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map8p11.22UniSTS
Cytogenetic Map10q23.2UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map6p25UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map8q24.22UniSTS
Cytogenetic Map6p23UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map7q22UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map12q22UniSTS
Cytogenetic Map18q12.1UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map10q24.32UniSTS
Cytogenetic Map4q26UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map11q12-q13UniSTS
Cytogenetic Map14q32.3UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map7q32.1UniSTS
Cytogenetic Map19p13.1UniSTS
Cytogenetic Map7p13-p12UniSTS
Cytogenetic Map10q25.2UniSTS
Cytogenetic Map3p14.1UniSTS
Cytogenetic Map8q22.1UniSTS
Cytogenetic Map4q21.1UniSTS
Cytogenetic Map12q13.12UniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map7q21.3UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map18q21.3UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map1q25.2UniSTS
Cytogenetic Map12q13UniSTS
Cytogenetic Map1p32UniSTS
Cytogenetic Map15q23UniSTS
Cytogenetic Map14q21.3UniSTS
Cytogenetic Map8p23.1UniSTS
Cytogenetic Map10q24.2UniSTS
Cytogenetic Map7p13UniSTS
D1S1423  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10p12.1UniSTS
Cytogenetic Map10p12.1-p11.2UniSTS
Cytogenetic Map9q34.13UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map21q22.2UniSTS
Cytogenetic Map3p24.2UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map1q24UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map7p15.2UniSTS
Cytogenetic Map6p21UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map6p22.3-p21.32UniSTS
Cytogenetic Map6q22.33UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map5q33.3UniSTS
Cytogenetic Map22q11.22UniSTS
Cytogenetic Map11q13.2-q13.3UniSTS
Cytogenetic Map3q22-q24UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map7q32UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map4q21.1UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map7q11.2UniSTS
Cytogenetic Map1p22.1UniSTS
Cytogenetic Map2q32UniSTS
Cytogenetic MapXq13.1UniSTS
Cytogenetic Map9q12UniSTS
Cytogenetic Map3q26.2UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map10q23-q24UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map16q24.3UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map4p14UniSTS
Cytogenetic Map2p12UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map18q22.1UniSTS
Cytogenetic Map13q12UniSTS
Cytogenetic Map10p14-p13UniSTS
Cytogenetic Map12p13.31UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map19q13.11UniSTS
Cytogenetic Map11q23-q24UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map17q25UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map5q23.3UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map16q13UniSTS
Cytogenetic Map11q25UniSTS
Cytogenetic Map22cen-q12.3UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map15q11.2-q21.3UniSTS
Cytogenetic Map1p21.2UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map7q21.13UniSTS
Cytogenetic Map7q31.1UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic Map3q25UniSTS
Cytogenetic Map2q24.2UniSTS
Cytogenetic Map1p31.3UniSTS
Cytogenetic Map14q31.1UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map20q13.31UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map6p12.1UniSTS
Cytogenetic Map6q25.3UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map11q24.2UniSTS
Cytogenetic Map10p15.1UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map12p13.32UniSTS
Cytogenetic Map4q35.1UniSTS
Cytogenetic Map2p13.3UniSTS
Cytogenetic Map1p22UniSTS
Cytogenetic Map2q14UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map14q32.33UniSTS
Cytogenetic Map1p36.1UniSTS
Cytogenetic Map8p11.21UniSTS
Cytogenetic MapXq26.3UniSTS
Cytogenetic Map8q24.11UniSTS
Cytogenetic Map9q22.31UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map17p13UniSTS
Cytogenetic Map8p11.22UniSTS
Cytogenetic Map4q28UniSTS
Cytogenetic Map15q24.1UniSTS
Cytogenetic Map1q41-q42UniSTS
Cytogenetic Map10q22UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map20q11.21UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map12p13.1-p12.3UniSTS
Cytogenetic Map6p21.33UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map1p13.1UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map14q12UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map5q12.3UniSTS
Cytogenetic Map7q33UniSTS
Cytogenetic Map17q21.2UniSTS
Cytogenetic Map4q23UniSTS
Cytogenetic Map12q13.12UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic Map10q26.11UniSTS
Cytogenetic Map14q32.12UniSTS
Cytogenetic Map11q24.1UniSTS
Cytogenetic Map18q23UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map18p11.31UniSTS
Cytogenetic Map2q24.3UniSTS
Cytogenetic Map11q23UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map13q34UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map10p14UniSTS
Cytogenetic Map15q22.2UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map5q32UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map12q23.2UniSTS
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map16q12.2UniSTS
Cytogenetic Map9q22.2UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map1p35.3UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map11p15.5UniSTS
Cytogenetic Map7q22UniSTS
Cytogenetic Map18p11.31-p11.21UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map3q13UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map1q43UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map7p21.2UniSTS
Cytogenetic Map12q21.1UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map15q13.1UniSTS
Cytogenetic Map1q42.1UniSTS
Cytogenetic Map5q31.2UniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map17p13.1UniSTS
Cytogenetic Map1p34-p33UniSTS
Cytogenetic Map3q22.1UniSTS
Cytogenetic Map7p14UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map12q24.2UniSTS
Cytogenetic Map20q13UniSTS
Cytogenetic Map19q13.3-q13.4UniSTS
Cytogenetic Map17q21.32UniSTS
Cytogenetic Map15q11.2UniSTS
Cytogenetic Map8p23-p22UniSTS
Cytogenetic Map1p12UniSTS
Cytogenetic Map3q13.33UniSTS
Cytogenetic Map10p12.33UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map3q26UniSTS
Cytogenetic Map9p21.2UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map5q21.3UniSTS
Cytogenetic Map1p36.22UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map3q26.31UniSTS
Cytogenetic MapXp22.33UniSTS
Cytogenetic MapYp11.3UniSTS
Cytogenetic Map17q24.1UniSTS
Cytogenetic Map9q21.11UniSTS
Cytogenetic Map6q22.31UniSTS
Cytogenetic Map9q21.13UniSTS
Cytogenetic Map10q11.22UniSTS
Cytogenetic Map22q13.31UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map17q21.33UniSTS
Cytogenetic Map5p13.3UniSTS
Cytogenetic Map10q21.3UniSTS
Cytogenetic Map10q22.1UniSTS
Cytogenetic Map1p34UniSTS
Cytogenetic MapXp22UniSTS
Cytogenetic Map20p12.3-p11.21UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map6p25UniSTS
Cytogenetic MapXq27.2UniSTS
Cytogenetic Map4q31.1UniSTS
Cytogenetic Map4q31UniSTS
Cytogenetic Map22q13.1-q13.2UniSTS
Cytogenetic MapXq28UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map3q26.33UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map10q24.3UniSTS
Cytogenetic Map16q21UniSTS
Cytogenetic Map2p13UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map7q21-q22UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map11q22.1UniSTS
Cytogenetic Map12q14.2UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map20q11.21-q11.23UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map12q22UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map21p11.1UniSTS
Cytogenetic Map1p35-p34.3UniSTS
Cytogenetic Map7p11.2UniSTS
Cytogenetic Map13q14UniSTS
Cytogenetic Map7q36.1UniSTS
Cytogenetic Map12q24.31-q24.32UniSTS
Cytogenetic Map17q21.1UniSTS
Cytogenetic Map3q12.3UniSTS
Cytogenetic Map12qUniSTS
Cytogenetic Map11q13.5UniSTS
Cytogenetic Map2p14UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map14q32.1UniSTS
Cytogenetic Map21q22.11UniSTS
Cytogenetic Map3p14.1UniSTS
Cytogenetic Map16q23.2UniSTS
Cytogenetic Map7q32.1UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map4q31.23UniSTS
Cytogenetic Map11p15.3UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map2p22.3UniSTS
Cytogenetic Map22q13UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map11q14UniSTS
Cytogenetic MapXq13.2UniSTS
Cytogenetic Map16p13.12UniSTS
Cytogenetic MapXq22.3UniSTS
Cytogenetic Map9p12UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map11q23.1UniSTS
Cytogenetic Map3q27.3UniSTS
Cytogenetic Map16q23.1UniSTS
Cytogenetic Map15q15.2UniSTS
Cytogenetic Map2p21UniSTS
Cytogenetic Map13q33.3UniSTS
Cytogenetic Map15q22-q24UniSTS
Cytogenetic Map14q32.11UniSTS
Cytogenetic Map7p14.3UniSTS
Cytogenetic Map14q21.2UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic Map15q23UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map4p15.31UniSTS
Cytogenetic Map1q22UniSTS
Cytogenetic Map20q13.1UniSTS
Cytogenetic Map15q21.3UniSTS
Cytogenetic Map10q23.33UniSTS
Cytogenetic Map4q26UniSTS
Cytogenetic MapXq24UniSTS
Cytogenetic Map10q23.1UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map15q22.1-q22.31UniSTS
Cytogenetic Map1q31-q41UniSTS
Cytogenetic Map6q23.3UniSTS
Cytogenetic Map7q21.2UniSTS
Cytogenetic Map14q23UniSTS
Cytogenetic Map12q11-q12UniSTS
Cytogenetic Map17q23.3UniSTS
Cytogenetic Map4q24UniSTS
Cytogenetic Map1p32UniSTS
Cytogenetic Map3p21.1-p14.2UniSTS
Cytogenetic Map12q22-q23.1UniSTS
Cytogenetic Map6p22.1UniSTS
Cytogenetic Map6q24.2UniSTS
Cytogenetic Map9p13.3UniSTS
Cytogenetic Map6p24.1UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map20q11.22-q11.23UniSTS
Cytogenetic Map3p22.3UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic MapXq13-q21UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map16p13.13UniSTS
Cytogenetic Map10pter-q25.3UniSTS
Cytogenetic Map9p24.1UniSTS
Cytogenetic Map12p13.2UniSTS
Cytogenetic Map12q24UniSTS
Cytogenetic Map3q28-q29UniSTS
Cytogenetic Map10q26UniSTS
Cytogenetic Map6p22.2UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map12q24.2-q24.31UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map1q32.2-q41UniSTS
Cytogenetic Map11q22-q23UniSTS
Cytogenetic Map12p13.3UniSTS
Cytogenetic Map1p34.1UniSTS
Cytogenetic Map22q11UniSTS
Cytogenetic Map2q21.1UniSTS
Cytogenetic Map16p13.11UniSTS
Cytogenetic Map1q25.1UniSTS
Cytogenetic Map1p36.3UniSTS
Cytogenetic Map9p21UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map1q41UniSTS
Cytogenetic Map11q13.1-q13.3UniSTS
Cytogenetic Map16p13UniSTS
Cytogenetic Map15q26UniSTS
Cytogenetic Map18q21UniSTS
Cytogenetic Map4p15.1-p14UniSTS
Cytogenetic Map8q11.2UniSTS
Cytogenetic Map16q22UniSTS
Cytogenetic Map15q11-q13UniSTS
Cytogenetic Map7p12.3UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map14q22.1UniSTS
Cytogenetic Map2q12.3UniSTS
Cytogenetic MapXp22.12UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map1p36.31UniSTS
Cytogenetic Map16q11.2UniSTS
Cytogenetic Map14q32.2UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map22q11.1UniSTS
Cytogenetic Map5q33.2UniSTS
Cytogenetic Map14q23.1UniSTS
Cytogenetic Map7q32.3UniSTS
Cytogenetic Map20q13.3UniSTS
Cytogenetic Map10q26.13UniSTS
Cytogenetic Map1p31.1UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map15q25.1UniSTS
Cytogenetic Map9p13UniSTS
Cytogenetic Map2p24.2UniSTS
Cytogenetic Map9q33.3UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map11q12.2UniSTS
Cytogenetic Map7p15.3UniSTS
Cytogenetic Map6p25.2UniSTS
Cytogenetic Map6q25.1UniSTS
Cytogenetic Map3p21.31UniSTS
Cytogenetic Map17q23.2UniSTS
Cytogenetic MapXq25UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map1q25.3UniSTS
Cytogenetic Map6p24-p22.3UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map3q21-q24UniSTS
Cytogenetic Map4q13UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map9q34UniSTS
Cytogenetic Map8q13.1UniSTS
Cytogenetic Map5q21.2UniSTS
Cytogenetic Map4q34.3UniSTS
Cytogenetic Map3p22.1UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map8p23.1UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map15q14UniSTS
Cytogenetic Map13q13.3UniSTS
Cytogenetic Map12q13.2UniSTS
Cytogenetic Map1q31UniSTS
Cytogenetic Map7q11.21UniSTS
Cytogenetic Map10q26.3UniSTS
Cytogenetic Map15q15UniSTS
Cytogenetic MapXp11.4UniSTS
Cytogenetic Map8q24.12UniSTS
Cytogenetic Map15q22UniSTS
Cytogenetic Map1q25.2UniSTS
Cytogenetic Map13q11-q12UniSTS
Cytogenetic Map10q24.2UniSTS
Cytogenetic Map15q21.1UniSTS
Cytogenetic Map15q13.2UniSTS
Cytogenetic Map6q25.2UniSTS
Cytogenetic Map14q11.2UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map6q14.1UniSTS
Cytogenetic Map3q23-q24UniSTS
Cytogenetic Map2p25.1-p24.1UniSTS
Cytogenetic Map12q14.3UniSTS
Cytogenetic Map6q16.1UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map20pter-p12UniSTS
Cytogenetic MapXp22.11UniSTS
Cytogenetic Map16p13.2UniSTS
Cytogenetic Map16q22.3UniSTS
Cytogenetic Map7q31.3UniSTS
Cytogenetic Map21q22.13UniSTS
Cytogenetic Map1p21UniSTS
Cytogenetic Map8p11UniSTS
Cytogenetic Map7p14.2UniSTS
Cytogenetic Map8p11.23UniSTS
Cytogenetic Map18p11.22UniSTS
Cytogenetic Map18q21.33UniSTS
Cytogenetic Map9p24.3UniSTS
Cytogenetic Map11q22.3UniSTS
Cytogenetic Map14q22.2UniSTS
Cytogenetic Map20p11.22-p11.1UniSTS
Cytogenetic Map6p21.31UniSTS
Cytogenetic Map14q22.3UniSTS
Cytogenetic Map12q15UniSTS
Cytogenetic Map7q31UniSTS
Cytogenetic Map2q12.2UniSTS
Cytogenetic Map8p12UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map6p12.3UniSTS
Cytogenetic Map11q12-q13UniSTS
Cytogenetic Map18q21.1UniSTS
Cytogenetic Map10p11.21UniSTS
Cytogenetic Map6p22-p21UniSTS
Cytogenetic Map17q21.1-q21.3UniSTS
Cytogenetic Map12q24.33UniSTS
Cytogenetic Map4p15.32UniSTS
Cytogenetic Map1q42.13UniSTS
Cytogenetic Map19q12UniSTS
Cytogenetic Map3p14.3UniSTS
Cytogenetic Map12p13.2-p12.3UniSTS
Cytogenetic Map9q22.32UniSTS
Cytogenetic Map1p36.3-p36.2UniSTS
Cytogenetic Map5q22.2UniSTS
Cytogenetic Map4p15.2UniSTS
Cytogenetic Map4p15.3UniSTS
Cytogenetic Map4q28.1UniSTS
Cytogenetic Map12q13.1-q13.2UniSTS
Cytogenetic Map19q13.33UniSTS
Cytogenetic Map1p31UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map15q15.3UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map9p22.3UniSTS
Cytogenetic Map8q22.2UniSTS
Cytogenetic Map8q21.11UniSTS
Cytogenetic Map22q12.1UniSTS
Cytogenetic Map3q13.2UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map2q33.3UniSTS
Cytogenetic Map8p22UniSTS
Cytogenetic Map10q22.2UniSTS
Cytogenetic Map20p12.1UniSTS
Cytogenetic Map6q13UniSTS
Cytogenetic Map6q22.32UniSTS
Cytogenetic Map5q34UniSTS
Cytogenetic Map5p15.2UniSTS
Cytogenetic Map5q11.2UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map18q11.2UniSTS
Cytogenetic Map18q12.2UniSTS
Cytogenetic Map14q21.3UniSTS
Cytogenetic Map13q33.1UniSTS
Cytogenetic Map12p11.21UniSTS
Cytogenetic Map12q23.1UniSTS
Cytogenetic Map16p12.1UniSTS
Cytogenetic Map2q33UniSTS
Cytogenetic Map5q12.1UniSTS
Cytogenetic Map12q24.13UniSTS
Cytogenetic Map13q14.2UniSTS
Cytogenetic Map7q36UniSTS
Cytogenetic Map10q22.3-q23.2UniSTS
Cytogenetic Map7p15UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map11q21UniSTS
Cytogenetic Map4q21.3UniSTS
Cytogenetic Map7p13-p12UniSTS
Cytogenetic Map8p21.2UniSTS
Cytogenetic Map4q22UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map3q12.1UniSTS
Cytogenetic Map7q21.1-q22UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map3q13.13-q13.2UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map13q32.2UniSTS
Cytogenetic Map3q26.32UniSTS
Cytogenetic Map15qUniSTS
Cytogenetic Map2p13.2UniSTS
Cytogenetic Map3p12.3UniSTS
Cytogenetic Map10q11.23UniSTS
Cytogenetic Map3q11.2UniSTS
Cytogenetic Map12q13.11UniSTS
Cytogenetic Map13q14.13UniSTS
Cytogenetic Map10q23UniSTS
Cytogenetic Map11p11.2UniSTS
Cytogenetic Map6q16.2UniSTS
Cytogenetic Map3q21.1UniSTS
Cytogenetic Map10q11.21UniSTS
Cytogenetic Map1p13.2UniSTS
Cytogenetic Map6p24.2UniSTS
Cytogenetic Map20q13.33UniSTS
D4S402  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4q26UniSTS
TNG Radiation Hybrid Map473797.0UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2436 2788 2253 4972 1726 2351 6 624 1943 465 2269 7296 6463 53 3733 1 852 1744 1617 174 1


1 to 30 of 75 rows
RefSeq Transcripts NM_001371395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001371396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001371397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001371398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001371399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001389658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001389659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001389660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001389661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001389662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001389663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001389664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001389665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001389666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001389667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_019050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005263075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005263076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005263077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006714240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011532037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011532038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017008313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017008314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017008315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047415826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047415827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047415828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047415829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047415830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 75 rows

Ensembl Acc Id: ENST00000274030   ⟹   ENSP00000274030
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4119,212,713 - 119,294,708 (+)Ensembl
Ensembl Acc Id: ENST00000450251   ⟹   ENSP00000409906
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4119,212,713 - 119,295,518 (+)Ensembl
Ensembl Acc Id: ENST00000507597
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4119,212,741 - 119,239,341 (+)Ensembl
Ensembl Acc Id: ENST00000507906   ⟹   ENSP00000421729
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4119,261,793 - 119,271,353 (+)Ensembl
Ensembl Acc Id: ENST00000509769   ⟹   ENSP00000426628
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4119,239,640 - 119,294,638 (+)Ensembl
Ensembl Acc Id: ENST00000510737
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4119,213,179 - 119,239,312 (+)Ensembl
Ensembl Acc Id: ENST00000510852
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4119,267,381 - 119,273,330 (+)Ensembl
Ensembl Acc Id: ENST00000514305
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4119,212,743 - 119,220,211 (+)Ensembl
Ensembl Acc Id: ENST00000514665
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4119,212,587 - 119,221,495 (+)Ensembl
Ensembl Acc Id: ENST00000688980   ⟹   ENSP00000509357
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4119,212,845 - 119,291,217 (+)Ensembl
Ensembl Acc Id: ENST00000692078   ⟹   ENSP00000509606
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4119,212,713 - 119,295,518 (+)Ensembl
RefSeq Acc Id: NM_001371395   ⟹   NP_001358324
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384119,212,713 - 119,295,518 (+)NCBI
T2T-CHM13v2.04122,517,784 - 122,600,620 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001371396   ⟹   NP_001358325
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384119,212,713 - 119,295,518 (+)NCBI
T2T-CHM13v2.04122,517,784 - 122,600,620 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001371397   ⟹   NP_001358326
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384119,212,713 - 119,295,518 (+)NCBI
T2T-CHM13v2.04122,517,784 - 122,600,620 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001371398   ⟹   NP_001358327
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384119,212,713 - 119,295,518 (+)NCBI
T2T-CHM13v2.04122,517,784 - 122,600,620 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001371399   ⟹   NP_001358328
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384119,212,713 - 119,295,518 (+)NCBI
T2T-CHM13v2.04122,517,784 - 122,600,620 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001389658   ⟹   NP_001376587
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384119,212,713 - 119,295,518 (+)NCBI
T2T-CHM13v2.04122,517,784 - 122,600,620 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001389659   ⟹   NP_001376588
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384119,212,713 - 119,295,518 (+)NCBI
T2T-CHM13v2.04122,517,784 - 122,600,620 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001389660   ⟹   NP_001376589
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384119,212,713 - 119,295,518 (+)NCBI
T2T-CHM13v2.04122,517,784 - 122,600,620 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001389661   ⟹   NP_001376590
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384119,212,713 - 119,295,518 (+)NCBI
T2T-CHM13v2.04122,517,784 - 122,600,620 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001389662   ⟹   NP_001376591
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384119,212,713 - 119,295,518 (+)NCBI
T2T-CHM13v2.04122,517,784 - 122,600,620 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001389663   ⟹   NP_001376592
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384119,212,713 - 119,295,518 (+)NCBI
T2T-CHM13v2.04122,517,784 - 122,600,620 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001389664   ⟹   NP_001376593
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384119,212,713 - 119,295,518 (+)NCBI
T2T-CHM13v2.04122,517,784 - 122,600,620 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001389665   ⟹   NP_001376594
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384119,212,713 - 119,295,518 (+)NCBI
T2T-CHM13v2.04122,517,784 - 122,600,620 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001389666   ⟹   NP_001376595
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384119,212,713 - 119,295,518 (+)NCBI
T2T-CHM13v2.04122,517,784 - 122,600,620 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001389667   ⟹   NP_001376596
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384119,212,713 - 119,295,518 (+)NCBI
T2T-CHM13v2.04122,517,784 - 122,600,620 (+)NCBI
Sequence:
RefSeq Acc Id: NM_019050   ⟹   NP_061923
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384119,212,713 - 119,295,518 (+)NCBI
GRCh374120,133,775 - 120,216,673 (+)NCBI
Build 364120,353,230 - 120,436,121 (+)NCBI Archive
Celera4117,495,374 - 117,578,263 (+)RGD
HuRef4115,855,506 - 115,938,506 (+)RGD
CHM1_14120,110,269 - 120,193,235 (+)NCBI
T2T-CHM13v2.04122,517,784 - 122,600,620 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005263075   ⟹   XP_005263132
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384119,212,713 - 119,295,518 (+)NCBI
GRCh374120,133,775 - 120,216,673 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005263077   ⟹   XP_005263134
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384119,212,713 - 119,295,518 (+)NCBI
GRCh374120,133,775 - 120,216,673 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011532037   ⟹   XP_011530339
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384119,213,234 - 119,295,518 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017008313   ⟹   XP_016863802
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384119,212,601 - 119,295,518 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017008314   ⟹   XP_016863803
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384119,213,234 - 119,295,518 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047415826   ⟹   XP_047271782
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384119,213,234 - 119,295,518 (+)NCBI
RefSeq Acc Id: XM_047415827   ⟹   XP_047271783
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384119,213,234 - 119,295,518 (+)NCBI
RefSeq Acc Id: XM_047415828   ⟹   XP_047271784
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384119,212,713 - 119,295,518 (+)NCBI
RefSeq Acc Id: XM_047415829   ⟹   XP_047271785
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384119,212,623 - 119,295,518 (+)NCBI
RefSeq Acc Id: XM_047415830   ⟹   XP_047271786
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384119,212,713 - 119,295,518 (+)NCBI
RefSeq Acc Id: XM_047415831   ⟹   XP_047271787
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384119,212,713 - 119,295,518 (+)NCBI
RefSeq Acc Id: XM_047415832   ⟹   XP_047271788
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384119,212,713 - 119,295,518 (+)NCBI
RefSeq Acc Id: XM_047415833   ⟹   XP_047271789
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384119,212,713 - 119,295,518 (+)NCBI
RefSeq Acc Id: XM_047415834   ⟹   XP_047271790
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384119,212,713 - 119,295,518 (+)NCBI
RefSeq Acc Id: XM_047415835   ⟹   XP_047271791
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384119,212,713 - 119,295,518 (+)NCBI
RefSeq Acc Id: XM_047415836   ⟹   XP_047271792
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384119,212,713 - 119,295,518 (+)NCBI
RefSeq Acc Id: XM_047415837   ⟹   XP_047271793
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384119,212,713 - 119,295,518 (+)NCBI
RefSeq Acc Id: XM_054350250   ⟹   XP_054206225
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.04122,518,313 - 122,600,620 (+)NCBI
RefSeq Acc Id: XM_054350251   ⟹   XP_054206226
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.04122,517,672 - 122,600,620 (+)NCBI
RefSeq Acc Id: XM_054350252   ⟹   XP_054206227
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.04122,518,326 - 122,600,620 (+)NCBI
RefSeq Acc Id: XM_054350253   ⟹   XP_054206228
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.04122,518,313 - 122,600,620 (+)NCBI
RefSeq Acc Id: XM_054350254   ⟹   XP_054206229
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.04122,518,326 - 122,600,620 (+)NCBI
RefSeq Acc Id: XM_054350255   ⟹   XP_054206230
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.04122,517,684 - 122,600,620 (+)NCBI
RefSeq Acc Id: XM_054350256   ⟹   XP_054206231
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.04122,517,694 - 122,600,620 (+)NCBI
RefSeq Acc Id: XM_054350257   ⟹   XP_054206232
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.04122,517,784 - 122,600,620 (+)NCBI
RefSeq Acc Id: XM_054350258   ⟹   XP_054206233
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.04122,517,784 - 122,600,620 (+)NCBI
RefSeq Acc Id: XM_054350259   ⟹   XP_054206234
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.04122,517,784 - 122,600,620 (+)NCBI
RefSeq Acc Id: XM_054350260   ⟹   XP_054206235
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.04122,517,784 - 122,600,620 (+)NCBI
RefSeq Acc Id: XM_054350261   ⟹   XP_054206236
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.04122,517,784 - 122,600,620 (+)NCBI
RefSeq Acc Id: XM_054350262   ⟹   XP_054206237
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.04122,517,784 - 122,600,620 (+)NCBI
RefSeq Acc Id: XM_054350263   ⟹   XP_054206238
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.04122,517,784 - 122,600,620 (+)NCBI
RefSeq Acc Id: XM_054350264   ⟹   XP_054206239
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.04122,517,784 - 122,600,620 (+)NCBI
RefSeq Acc Id: XM_054350265   ⟹   XP_054206240
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.04122,517,784 - 122,600,620 (+)NCBI
RefSeq Acc Id: XM_054350266   ⟹   XP_054206241
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.04122,517,784 - 122,600,620 (+)NCBI
1 to 30 of 64 rows
Protein RefSeqs NP_001358324 (Get FASTA)   NCBI Sequence Viewer  
  NP_001358325 (Get FASTA)   NCBI Sequence Viewer  
  NP_001358326 (Get FASTA)   NCBI Sequence Viewer  
  NP_001358327 (Get FASTA)   NCBI Sequence Viewer  
  NP_001358328 (Get FASTA)   NCBI Sequence Viewer  
  NP_001376587 (Get FASTA)   NCBI Sequence Viewer  
  NP_001376588 (Get FASTA)   NCBI Sequence Viewer  
  NP_001376589 (Get FASTA)   NCBI Sequence Viewer  
  NP_001376590 (Get FASTA)   NCBI Sequence Viewer  
  NP_001376591 (Get FASTA)   NCBI Sequence Viewer  
  NP_001376592 (Get FASTA)   NCBI Sequence Viewer  
  NP_001376593 (Get FASTA)   NCBI Sequence Viewer  
  NP_001376594 (Get FASTA)   NCBI Sequence Viewer  
  NP_001376595 (Get FASTA)   NCBI Sequence Viewer  
  NP_001376596 (Get FASTA)   NCBI Sequence Viewer  
  NP_061923 (Get FASTA)   NCBI Sequence Viewer  
  XP_005263132 (Get FASTA)   NCBI Sequence Viewer  
  XP_005263134 (Get FASTA)   NCBI Sequence Viewer  
  XP_011530339 (Get FASTA)   NCBI Sequence Viewer  
  XP_016863802 (Get FASTA)   NCBI Sequence Viewer  
  XP_016863803 (Get FASTA)   NCBI Sequence Viewer  
  XP_047271782 (Get FASTA)   NCBI Sequence Viewer  
  XP_047271783 (Get FASTA)   NCBI Sequence Viewer  
  XP_047271784 (Get FASTA)   NCBI Sequence Viewer  
  XP_047271785 (Get FASTA)   NCBI Sequence Viewer  
  XP_047271786 (Get FASTA)   NCBI Sequence Viewer  
  XP_047271787 (Get FASTA)   NCBI Sequence Viewer  
  XP_047271788 (Get FASTA)   NCBI Sequence Viewer  
  XP_047271789 (Get FASTA)   NCBI Sequence Viewer  
  XP_047271790 (Get FASTA)   NCBI Sequence Viewer  
1 to 30 of 64 rows
1 to 5 of 56 rows
1 to 5 of 56 rows
RefSeq Acc Id: NP_061923   ⟸   NM_019050
- Peptide Label: isoform 1
- UniProtKB: Q8WVQ5 (UniProtKB/Swiss-Prot),   Q68DA5 (UniProtKB/Swiss-Prot),   Q9P2J7 (UniProtKB/Swiss-Prot),   Q70EK8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_005263132   ⟸   XM_005263075
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005263134   ⟸   XM_005263077
- Peptide Label: isoform X5
- UniProtKB: A0A8J9FKG6 (UniProtKB/TrEMBL),   A0A8I5KT61 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011530339   ⟸   XM_011532037
- Peptide Label: isoform X1
- UniProtKB: Q8WVQ5 (UniProtKB/Swiss-Prot),   Q68DA5 (UniProtKB/Swiss-Prot),   Q9P2J7 (UniProtKB/Swiss-Prot),   Q70EK8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_016863802   ⟸   XM_017008313
- Peptide Label: isoform X1
- UniProtKB: Q8WVQ5 (UniProtKB/Swiss-Prot),   Q68DA5 (UniProtKB/Swiss-Prot),   Q9P2J7 (UniProtKB/Swiss-Prot),   Q70EK8 (UniProtKB/Swiss-Prot)
- Sequence:
USP

Name Modeler Protein Id AA Range Protein Structure
AF-Q70EK8-F1-model_v2 AlphaFold Q70EK8 1-1073 view protein structure

RGD ID:6868360
Promoter ID:EPDNEW_H7345
Type:initiation region
Name:USP53_1
Description:ubiquitin specific peptidase 53
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H7346  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh384119,212,713 - 119,212,773EPDNEW
RGD ID:6868362
Promoter ID:EPDNEW_H7346
Type:initiation region
Name:USP53_2
Description:ubiquitin specific peptidase 53
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H7345  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh384119,217,810 - 119,217,870EPDNEW
RGD ID:6802757
Promoter ID:HG_KWN:48993
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   K562,   Lymphoblastoid
Transcripts:NM_019050,   UC003ICR.2
Position:
Human AssemblyChrPosition (strand)Source
Build 364120,352,331 - 120,353,447 (+)MPROMDB


1 to 39 of 39 rows
Database
Acc Id
Source(s)
COSMIC USP53 COSMIC
Ensembl Genes ENSG00000145390 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000274030 ENTREZGENE
  ENST00000450251 ENTREZGENE
  ENST00000450251.6 UniProtKB/Swiss-Prot
  ENST00000688980 ENTREZGENE
  ENST00000692078 ENTREZGENE
  ENST00000692078.1 UniProtKB/Swiss-Prot
Gene3D-CATH Cysteine proteinases UniProtKB/Swiss-Prot
GTEx ENSG00000145390 GTEx
HGNC ID HGNC:29255 ENTREZGENE
Human Proteome Map USP53 Human Proteome Map
InterPro Inactive_ubiquitin_hydrolase UniProtKB/Swiss-Prot
  Papain-like_cys_pep_sf UniProtKB/Swiss-Prot
  Peptidase_C19_UCH UniProtKB/Swiss-Prot
  USP_dom UniProtKB/Swiss-Prot
KEGG Report hsa:54532 UniProtKB/Swiss-Prot
NCBI Gene 54532 ENTREZGENE
OMIM 617431 OMIM
PANTHER PTHR22975:SF6 UniProtKB/Swiss-Prot
  UBIQUITIN SPECIFIC PROTEINASE UniProtKB/Swiss-Prot
Pfam UCH UniProtKB/Swiss-Prot
PharmGKB PA134940368 PharmGKB
PROSITE USP_3 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54001 UniProtKB/Swiss-Prot
UniProt A0A8I5KT61 ENTREZGENE, UniProtKB/TrEMBL
  A0A8J9FKG6 ENTREZGENE, UniProtKB/TrEMBL
  D6RF54_HUMAN UniProtKB/TrEMBL
  H0Y8Q1_HUMAN UniProtKB/TrEMBL
  L8E8X6_HUMAN UniProtKB/TrEMBL
  Q68DA5 ENTREZGENE
  Q70EK8 ENTREZGENE
  Q8WVQ5 ENTREZGENE
  Q9H9I0_HUMAN UniProtKB/TrEMBL
  Q9P2J7 ENTREZGENE
  UBP53_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary Q68DA5 UniProtKB/Swiss-Prot
  Q8WVQ5 UniProtKB/Swiss-Prot
  Q9P2J7 UniProtKB/Swiss-Prot
1 to 39 of 39 rows