GWAS1319804_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1319804_H (BMI-adjusted waist circumference QTL GWAS1319804 (human)) Homo sapiens

Symbol: GWAS1319804_H
Name: BMI-adjusted waist circumference QTL GWAS1319804 (human)
RGD ID: 597223730
Trait: body size trait   (VT:0100005)    
LOD Score: Not Available
P Value: 4.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh384119,213,641 - 119,213,642RGD_MAPPER_PIPELINEGRCh38
GRCh374120,134,796 - 120,134,803RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1319804_HHumanbody size trait  IAGPrs141285286405850206 GWAS_CATALOGPMID:34021172

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1319804_HHumanBMI-adjusted waist circumference  IAGPrs141285286405850206 GWAS_CATALOGPMID:34021172

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1315332USP53ubiquitin specific peptidase 534119212601119295518Human


Peak: (rs141285286)
Human AssemblyChrPosition (strand)Source
GRCh384119,213,641 - 119,213,642RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597316090GWAS1412164_HBMI-adjusted waist circumference QTL GWAS1412164 (human)2e-11body size trait (VT:0100005)4119213641119213642Human
1643256BW127_HBody Weight QTL 127 (human)1.310.007Body weightbody mass index4106319694132319694Human
597291773GWAS1387847_HBMI-adjusted waist-hip ratio QTL GWAS1387847 (human)5e-11body size trait (VT:0100005)4119213641119213642Human
597244940GWAS1341014_HBMI-adjusted waist-hip ratio QTL GWAS1341014 (human)2e-10body size trait (VT:0100005)4119213641119213642Human
597223730GWAS1319804_HBMI-adjusted waist circumference QTL GWAS1319804 (human)4e-11body size trait (VT:0100005)4119213641119213642Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1319804_H GCST90020024 A body shape index 219,872 British ancestry women GATATAT NR 4E-11 10.398 rs141285286 0.0283121 BMI-adjusted waist circumference (EFO:0007789)
 PMID:34021172
GWAS1341014_H GCST90020025 Waist-to-hip ratio adjusted for BMI 219,872 British ancestry women GATATAT NR 2E-10 9.699 rs141285286 0.0269267 BMI-adjusted waist-hip ratio (EFO:0007788)
 PMID:34021172
GWAS1387847_H GCST90020027 Waist-hip index 219,872 British ancestry women GATATAT NR 5E-11 10.302 rs141285286 0.0278676 BMI-adjusted waist-hip ratio (EFO:0007788)
 PMID:34021172
GWAS1412164_H GCST90020029 Waist circumference adjusted for body mass index 219,872 British ancestry women GATATAT NR 2E-11 10.699 rs141285286 0.0287853 BMI-adjusted waist circumference (EFO:0007789)
 PMID:34021172
Database
Acc Id
Source(s)
GWAS Catalog GCST90020024 GWAS Catalog

Note Type Note Reference