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Gene: Rab20 (RAB20, member RAS oncogene family) Mus musculus

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Symbol:

Rab20

Name:

RAB20, member RAS oncogene family

RGD ID:

1315117

MGI Page

MGI

Description:

Predicted to enable GTPase activity. Acts upstream of or within cellular response to type II interferon. Located in phagocytic vesicle. Is expressed in alimentary system; genitourinary system; heart; lung; and yolk sac. Orthologous to human RAB20 (RAB20, member RAS oncogene family).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

AA536966; D8Ertd350; D8Ertd350e; MGC107554; ras-related protein Rab-20

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RAB20 (RAB20, member RAS oncogene family)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Rab20 (RAB20, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rab20 (RAB20, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RAB20 (RAB20, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RAB20 (RAB20, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rab20 (RAB20, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RAB20 (RAB20, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RAB20 (RAB20, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rab20 (RAB20, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	RAB20 (RAB20, member RAS oncogene family)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Rattus norvegicus (Norway rat):	Rab20 (RAB20, member RAS oncogene family)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rab20 (RAB20, member RAS oncogene family)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rab20	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	11,503,390 - 11,528,640 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	11,503,518 - 11,528,710 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	11,453,390 - 11,478,640 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	11,453,518 - 11,478,710 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	11,453,977 - 11,478,499 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	11,453,949 - 11,478,471 (-)	NCBI		MGSCv36	mm8
Celera	8	11,628,822 - 11,653,857 (-)	NCBI		Celera
Cytogenetic Map	8	A1.1	NCBI
cM Map	8	5.73	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rab20	Mouse	COVID-19		ISO	RAB20 (Homo sapiens)	9068941	mRNA:increased expression:peripheral blood mononuclear cell (human)	RGD	PMID:32228226 and REF_RGD_ID:28912744

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rab20	Mouse	Anal Atresia, Hypospadias, and Penoscrotal Inversion		ISO	RAB20 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Anal atresia more ...	ClinVar	PMID:31690835
Rab20	Mouse	factor X deficiency		ISO	RAB20 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Factor X deficiency	ClinVar	PMID:25741868 and PMID:34355501

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rab20	Mouse	(-)-demecolcine	decreases expression	ISO	RAB20 (Homo sapiens)	6480464	Demecolcine results in decreased expression of RAB20 mRNA	CTD	PMID:23649840
Rab20	Mouse	(1->4)-beta-D-glucan	multiple interactions	EXP		6480464	[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of RAB20 mRNA	CTD	PMID:36331819
Rab20	Mouse	1,2-dimethylhydrazine	increases expression	EXP		6480464	1 and 2-Dimethylhydrazine results in increased expression of RAB20 mRNA	CTD	PMID:22206623
Rab20	Mouse	1,3-dinitrobenzene	increases expression	ISO	Rab20 (Rattus norvegicus)	6480464	3-dinitrobenzene results in increased expression of RAB20 mRNA	CTD	PMID:21983209
Rab20	Mouse	1-nitropyrene	decreases expression	ISO	RAB20 (Homo sapiens)	6480464	1-nitropyrene results in decreased expression of RAB20 mRNA	CTD	PMID:19041380
Rab20	Mouse	17alpha-ethynylestradiol	increases expression	EXP		6480464	Ethinyl Estradiol results in increased expression of RAB20 mRNA	CTD	PMID:17942748
Rab20	Mouse	17alpha-ethynylestradiol	multiple interactions	EXP		6480464	[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of RAB20 mRNA	CTD	PMID:17942748
Rab20	Mouse	17beta-estradiol	multiple interactions	ISO	RAB20 (Homo sapiens)	6480464	[Estradiol co-treated with TGFB1 protein] results in decreased expression of RAB20 mRNA	CTD	PMID:30165855
Rab20	Mouse	17beta-estradiol	decreases expression	EXP		6480464	Estradiol results in decreased expression of RAB20 mRNA	CTD	PMID:39298647
Rab20	Mouse	17beta-hydroxy-5alpha-androstan-3-one	increases expression	ISO	RAB20 (Homo sapiens)	6480464	Dihydrotestosterone results in increased expression of RAB20 mRNA	CTD	PMID:29581250
Rab20	Mouse	2,3,7,8-tetrachlorodibenzodioxine	multiple interactions	EXP		6480464	[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of RAB20 mRNA and Tetrachlorodibenzodioxin promotes the reaction [AHR protein binds to RAB20 gene]	CTD	PMID:17942748 and PMID:20819909
Rab20	Mouse	2,3,7,8-tetrachlorodibenzodioxine	increases expression	ISO	Rab20 (Rattus norvegicus)	6480464	Tetrachlorodibenzodioxin results in increased expression of RAB20 mRNA	CTD	PMID:33387578
Rab20	Mouse	2,3,7,8-tetrachlorodibenzodioxine	affects expression	EXP		6480464	Tetrachlorodibenzodioxin affects the expression of RAB20 mRNA	CTD	PMID:21570461
Rab20	Mouse	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	EXP		6480464	Tetrachlorodibenzodioxin results in decreased expression of RAB20 mRNA	CTD	PMID:20819909
Rab20	Mouse	2-butoxyethanol	increases expression	EXP		6480464	n-butoxyethanol results in increased expression of RAB20 mRNA	CTD	PMID:19812364
Rab20	Mouse	3,3',5,5'-tetrabromobisphenol A	increases expression	EXP		6480464	tetrabromobisphenol A results in increased expression of RAB20 mRNA	CTD	PMID:25172293
Rab20	Mouse	4,4'-sulfonyldiphenol	decreases expression	EXP		6480464	bisphenol S results in decreased expression of RAB20 mRNA	CTD	PMID:39298647
Rab20	Mouse	4-(ethoxymethylene)-2-phenyloxazol-5-one	increases expression	ISO	Rab20 (Rattus norvegicus)	6480464	Oxazolone results in increased expression of RAB20 mRNA	CTD	PMID:21893156
Rab20	Mouse	4-\{[(5,5,8,8-tetramethyl-5,6,7,8-tetrahydronaphthalen-2-yl)carbonyl]amino\}benzoic acid	increases expression	ISO	RAB20 (Homo sapiens)	6480464	Am 580 results in increased expression of RAB20 mRNA	CTD	PMID:16982809
Rab20	Mouse	4-hydroxyphenyl retinamide	increases expression	EXP		6480464	Fenretinide results in increased expression of RAB20 mRNA	CTD	PMID:28973697
Rab20	Mouse	5-fluorouracil	affects response to substance	ISO	RAB20 (Homo sapiens)	6480464	RAB20 protein affects the susceptibility to Fluorouracil	CTD	PMID:16217747
Rab20	Mouse	6-propyl-2-thiouracil	increases expression	ISO	Rab20 (Rattus norvegicus)	6480464	Propylthiouracil results in increased expression of RAB20 mRNA	CTD	PMID:24780913 and PMID:25825206
Rab20	Mouse	acrylamide	increases expression	ISO	Rab20 (Rattus norvegicus)	6480464	Acrylamide results in increased expression of RAB20 mRNA	CTD	PMID:28959563
Rab20	Mouse	Aflatoxin B2 alpha	decreases methylation	ISO	RAB20 (Homo sapiens)	6480464	aflatoxin B2 results in decreased methylation of RAB20 exon	CTD	PMID:30157460
Rab20	Mouse	all-trans-retinoic acid	increases expression	ISO	RAB20 (Homo sapiens)	6480464	Tretinoin results in increased expression of RAB20 mRNA	CTD	PMID:33167477
Rab20	Mouse	amphetamine	increases expression	ISO	Rab20 (Rattus norvegicus)	6480464	Amphetamine results in increased expression of RAB20 mRNA	CTD	PMID:30779732
Rab20	Mouse	antirheumatic drug	decreases expression	ISO	RAB20 (Homo sapiens)	6480464	Antirheumatic Agents results in decreased expression of RAB20 mRNA	CTD	PMID:24449571
Rab20	Mouse	aristolochic acid A	decreases expression	ISO	RAB20 (Homo sapiens)	6480464	aristolochic acid I results in decreased expression of RAB20 mRNA	CTD	PMID:33212167
Rab20	Mouse	benzo[a]pyrene	decreases expression	ISO	RAB20 (Homo sapiens)	6480464	Benzo(a)pyrene results in decreased expression of RAB20 mRNA	CTD	PMID:20064835
Rab20	Mouse	benzo[a]pyrene	affects methylation	ISO	RAB20 (Homo sapiens)	6480464	Benzo(a)pyrene affects the methylation of RAB20 intron	CTD	PMID:30157460
Rab20	Mouse	benzo[a]pyrene	increases methylation	ISO	RAB20 (Homo sapiens)	6480464	Benzo(a)pyrene results in increased methylation of RAB20 promoter	CTD	PMID:27901495
Rab20	Mouse	benzo[a]pyrene	decreases expression	EXP		6480464	Benzo(a)pyrene results in decreased expression of RAB20 mRNA	CTD	PMID:19770486
Rab20	Mouse	benzo[a]pyrene diol epoxide I	decreases expression	ISO	RAB20 (Homo sapiens)	6480464	7 more ...	CTD	PMID:19150397
Rab20	Mouse	bis(2-ethylhexyl) phthalate	increases expression	ISO	RAB20 (Homo sapiens)	6480464	Diethylhexyl Phthalate results in increased expression of RAB20 mRNA	CTD	PMID:31163220
Rab20	Mouse	bis(2-ethylhexyl) phthalate	increases expression	EXP		6480464	Diethylhexyl Phthalate results in increased expression of RAB20 mRNA	CTD	PMID:34319233
Rab20	Mouse	bisphenol A	increases expression	ISO	Rab20 (Rattus norvegicus)	6480464	bisphenol A results in increased expression of RAB20 mRNA	CTD	PMID:25181051
Rab20	Mouse	bisphenol A	multiple interactions	ISO	RAB20 (Homo sapiens)	6480464	[bisphenol A co-treated with Fulvestrant] results in increased methylation of RAB20 gene	CTD	PMID:31601247
Rab20	Mouse	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of RAB20 mRNA	CTD	PMID:32156529 and PMID:34585602
Rab20	Mouse	bisphenol A	decreases expression	ISO	Rab20 (Rattus norvegicus)	6480464	bisphenol A results in decreased expression of RAB20 mRNA	CTD	PMID:34947998
Rab20	Mouse	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of RAB20 mRNA	CTD	PMID:30245210
Rab20	Mouse	carbamazepine	affects expression	ISO	RAB20 (Homo sapiens)	6480464	Carbamazepine affects the expression of RAB20 mRNA	CTD	PMID:25979313
Rab20	Mouse	carbon nanotube	decreases expression	EXP		6480464	Nanotubes more ...	CTD	PMID:25620056
Rab20	Mouse	carbon nanotube	increases expression	EXP		6480464	Nanotubes more ...	CTD	PMID:25554681
Rab20	Mouse	CGP 52608	multiple interactions	ISO	RAB20 (Homo sapiens)	6480464	CGP 52608 promotes the reaction [RORA protein binds to RAB20 gene]	CTD	PMID:28238834
Rab20	Mouse	cobalt dichloride	multiple interactions	ISO	RAB20 (Homo sapiens)	6480464	zinc chloride inhibits the reaction [cobaltous chloride results in increased expression of RAB20 mRNA]	CTD	PMID:22202117
Rab20	Mouse	cobalt dichloride	increases expression	ISO	RAB20 (Homo sapiens)	6480464	cobaltous chloride results in increased expression of RAB20 mRNA	CTD	PMID:22202117
Rab20	Mouse	copper(II) sulfate	increases expression	ISO	RAB20 (Homo sapiens)	6480464	Copper Sulfate results in increased expression of RAB20 mRNA	CTD	PMID:19549813
Rab20	Mouse	Dibutyl phosphate	affects expression	ISO	RAB20 (Homo sapiens)	6480464	di-n-butylphosphoric acid affects the expression of RAB20 mRNA	CTD	PMID:37042841
Rab20	Mouse	dibutyl phthalate	increases expression	ISO	Rab20 (Rattus norvegicus)	6480464	Dibutyl Phthalate results in increased expression of RAB20 mRNA	CTD	PMID:21266533
Rab20	Mouse	diethylstilbestrol	decreases expression	ISO	RAB20 (Homo sapiens)	6480464	Diethylstilbestrol results in decreased expression of RAB20 mRNA	CTD	PMID:19371625
Rab20	Mouse	dioxygen	increases expression	ISO	RAB20 (Homo sapiens)	6480464	Oxygen deficiency results in increased expression of RAB20 mRNA	CTD	PMID:24236059
Rab20	Mouse	dioxygen	multiple interactions	EXP		6480464	[NFE2L2 protein affects the susceptibility to Oxygen] which affects the expression of RAB20 mRNA	CTD	PMID:30529165
Rab20	Mouse	diuron	increases expression	ISO	Rab20 (Rattus norvegicus)	6480464	Diuron results in increased expression of RAB20 mRNA	CTD	PMID:21551480
Rab20	Mouse	dorsomorphin	multiple interactions	ISO	RAB20 (Homo sapiens)	6480464	[NOG protein co-treated with entinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1 more ...	CTD	PMID:27188386
Rab20	Mouse	entinostat	increases expression	ISO	RAB20 (Homo sapiens)	6480464	entinostat results in increased expression of RAB20 mRNA	CTD	PMID:26272509
Rab20	Mouse	entinostat	multiple interactions	ISO	RAB20 (Homo sapiens)	6480464	[NOG protein co-treated with entinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of RAB20 mRNA	CTD	PMID:27188386
Rab20	Mouse	ethyl methanesulfonate	decreases expression	ISO	RAB20 (Homo sapiens)	6480464	Ethyl Methanesulfonate results in decreased expression of RAB20 mRNA	CTD	PMID:23649840
Rab20	Mouse	etoposide	affects response to substance	ISO	RAB20 (Homo sapiens)	6480464	RAB20 protein affects the susceptibility to Etoposide	CTD	PMID:16217747
Rab20	Mouse	fluoranthene	multiple interactions	EXP		6480464	[1-methylanthracene co-treated with fluoranthene] results in increased expression of RAB20 mRNA	CTD	PMID:28329830
Rab20	Mouse	formaldehyde	decreases expression	ISO	RAB20 (Homo sapiens)	6480464	Formaldehyde results in decreased expression of RAB20 mRNA	CTD	PMID:23649840
Rab20	Mouse	fulvestrant	multiple interactions	ISO	RAB20 (Homo sapiens)	6480464	[bisphenol A co-treated with Fulvestrant] results in increased methylation of RAB20 gene	CTD	PMID:31601247
Rab20	Mouse	furan	increases methylation	ISO	Rab20 (Rattus norvegicus)	6480464	furan results in increased methylation of RAB20 gene	CTD	PMID:22079235
Rab20	Mouse	gentamycin	increases expression	ISO	Rab20 (Rattus norvegicus)	6480464	Gentamicins results in increased expression of RAB20 mRNA	CTD	PMID:33387578
Rab20	Mouse	glycidyl methacrylate	decreases expression	ISO	RAB20 (Homo sapiens)	6480464	glycidyl methacrylate results in decreased expression of RAB20 protein	CTD	PMID:36641056
Rab20	Mouse	iron dichloride	decreases expression	ISO	RAB20 (Homo sapiens)	6480464	ferrous chloride results in decreased expression of RAB20 mRNA	CTD	PMID:35984750
Rab20	Mouse	manganese(II) chloride	increases expression	ISO	Rab20 (Rattus norvegicus)	6480464	manganese chloride results in increased expression of RAB20 mRNA	CTD	PMID:28801915
Rab20	Mouse	mercury dibromide	increases expression	ISO	RAB20 (Homo sapiens)	6480464	mercuric bromide results in increased expression of RAB20 mRNA	CTD	PMID:26272509
Rab20	Mouse	mercury dibromide	multiple interactions	ISO	RAB20 (Homo sapiens)	6480464	[NOG protein co-treated with mercuric bromide co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of RAB20 mRNA	CTD	PMID:27188386
Rab20	Mouse	methapyrilene	increases expression	ISO	Rab20 (Rattus norvegicus)	6480464	Methapyrilene results in increased expression of RAB20 mRNA	CTD	PMID:30467583
Rab20	Mouse	methotrexate	decreases expression	ISO	RAB20 (Homo sapiens)	6480464	Methotrexate results in decreased expression of RAB20 mRNA	CTD	PMID:24449571
Rab20	Mouse	methyl methanesulfonate	decreases expression	ISO	RAB20 (Homo sapiens)	6480464	Methyl Methanesulfonate results in decreased expression of RAB20 mRNA	CTD	PMID:23649840
Rab20	Mouse	methylmercury chloride	increases expression	ISO	RAB20 (Homo sapiens)	6480464	methylmercuric chloride results in increased expression of RAB20 mRNA	CTD	PMID:28001369
Rab20	Mouse	mitomycin C	affects response to substance	ISO	RAB20 (Homo sapiens)	6480464	RAB20 protein affects the susceptibility to Mitomycin	CTD	PMID:16217747
Rab20	Mouse	mono(2-ethylhexyl) phthalate	increases expression	ISO	Rab20 (Rattus norvegicus)	6480464	mono-(2-ethylhexyl)phthalate results in increased expression of RAB20 mRNA	CTD	PMID:16809437
Rab20	Mouse	nickel atom	increases expression	ISO	RAB20 (Homo sapiens)	6480464	Nickel results in increased expression of RAB20 mRNA	CTD	PMID:24768652
Rab20	Mouse	oxaliplatin	multiple interactions	ISO	Rab20 (Rattus norvegicus)	6480464	[oxaliplatin co-treated with Topotecan] results in increased expression of RAB20 mRNA	CTD	PMID:25729387
Rab20	Mouse	ozone	multiple interactions	EXP		6480464	[Air Pollutants results in increased abundance of [Ozone co-treated with Soot]] which results in increased expression of RAB20 mRNA	CTD	PMID:34911549
Rab20	Mouse	p-chloromercuribenzoic acid	increases expression	ISO	RAB20 (Homo sapiens)	6480464	p-Chloromercuribenzoic Acid results in increased expression of RAB20 mRNA	CTD	PMID:26272509
Rab20	Mouse	p-chloromercuribenzoic acid	multiple interactions	ISO	RAB20 (Homo sapiens)	6480464	[NOG protein co-treated with p-Chloromercuribenzoic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of RAB20 mRNA	CTD	PMID:27188386
Rab20	Mouse	panobinostat	multiple interactions	ISO	RAB20 (Homo sapiens)	6480464	[NOG protein co-treated with Panobinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of RAB20 mRNA	CTD	PMID:27188386
Rab20	Mouse	panobinostat	increases expression	ISO	RAB20 (Homo sapiens)	6480464	panobinostat results in increased expression of RAB20 mRNA	CTD	PMID:26272509
Rab20	Mouse	paracetamol	affects expression	EXP		6480464	Acetaminophen affects the expression of RAB20 mRNA	CTD	PMID:17562736
Rab20	Mouse	paracetamol	increases expression	ISO	Rab20 (Rattus norvegicus)	6480464	Acetaminophen results in increased expression of RAB20 mRNA	CTD	PMID:33387578
Rab20	Mouse	paracetamol	affects response to substance	ISO	RAB20 (Homo sapiens)	6480464	RAB20 gene polymorphism affects the susceptibility to Acetaminophen	CTD	PMID:26104854
Rab20	Mouse	paracetamol	decreases expression	ISO	RAB20 (Homo sapiens)	6480464	Acetaminophen results in decreased expression of RAB20 mRNA	CTD	PMID:21420995 and PMID:29067470
Rab20	Mouse	perfluorooctane-1-sulfonic acid	multiple interactions	EXP		6480464	[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of RAB20 mRNA	CTD	PMID:36331819
Rab20	Mouse	phenylmercury acetate	increases expression	ISO	RAB20 (Homo sapiens)	6480464	Phenylmercuric Acetate results in increased expression of RAB20 mRNA	CTD	PMID:26272509
Rab20	Mouse	phenylmercury acetate	multiple interactions	ISO	RAB20 (Homo sapiens)	6480464	[NOG protein co-treated with Phenylmercuric Acetate co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of RAB20 mRNA	CTD	PMID:27188386
Rab20	Mouse	pirinixic acid	decreases expression	EXP		6480464	pirinixic acid results in decreased expression of RAB20 mRNA	CTD	PMID:23811191
Rab20	Mouse	quercetin	decreases expression	ISO	RAB20 (Homo sapiens)	6480464	Quercetin results in decreased expression of RAB20 mRNA	CTD	PMID:21632981
Rab20	Mouse	resveratrol	increases expression	EXP		6480464	resveratrol results in increased expression of RAB20 protein	CTD	PMID:25505154
Rab20	Mouse	SB 431542	multiple interactions	ISO	RAB20 (Homo sapiens)	6480464	[NOG protein co-treated with entinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1 more ...	CTD	PMID:27188386
Rab20	Mouse	silicon dioxide	decreases expression	ISO	RAB20 (Homo sapiens)	6480464	Silicon Dioxide analog results in decreased expression of RAB20 mRNA	CTD	PMID:25895662
Rab20	Mouse	silicon dioxide	increases expression	EXP		6480464	Silicon Dioxide results in increased expression of RAB20 mRNA	CTD	PMID:19073995 and PMID:29203145
Rab20	Mouse	sodium arsenite	decreases expression	ISO	RAB20 (Homo sapiens)	6480464	sodium arsenite results in decreased expression of RAB20 mRNA	CTD	PMID:38568856
Rab20	Mouse	sulforaphane	decreases expression	ISO	RAB20 (Homo sapiens)	6480464	sulforaphane results in decreased expression of RAB20 mRNA	CTD	PMID:31838189
Rab20	Mouse	sunitinib	increases expression	ISO	RAB20 (Homo sapiens)	6480464	Sunitinib results in increased expression of RAB20 mRNA	CTD	PMID:31533062
Rab20	Mouse	T-2 toxin	increases expression	ISO	RAB20 (Homo sapiens)	6480464	T-2 Toxin results in increased expression of RAB20 mRNA	CTD	PMID:31863870
Rab20	Mouse	thioacetamide	increases expression	ISO	Rab20 (Rattus norvegicus)	6480464	Thioacetamide results in increased expression of RAB20 mRNA	CTD	PMID:34492290
Rab20	Mouse	titanium dioxide	increases expression	EXP		6480464	titanium dioxide results in increased expression of RAB20 mRNA	CTD	PMID:27760801
Rab20	Mouse	topotecan	increases expression	ISO	Rab20 (Rattus norvegicus)	6480464	Topotecan results in increased expression of RAB20 mRNA	CTD	PMID:25729387
Rab20	Mouse	topotecan	affects response to substance	ISO	RAB20 (Homo sapiens)	6480464	RAB20 protein affects the susceptibility to Topotecan	CTD	PMID:16217747
Rab20	Mouse	topotecan	multiple interactions	ISO	Rab20 (Rattus norvegicus)	6480464	[oxaliplatin co-treated with Topotecan] results in increased expression of RAB20 mRNA	CTD	PMID:25729387
Rab20	Mouse	trichloroethene	increases expression	ISO	Rab20 (Rattus norvegicus)	6480464	Trichloroethylene results in increased expression of RAB20 mRNA	CTD	PMID:33387578
Rab20	Mouse	trichostatin A	increases expression	ISO	RAB20 (Homo sapiens)	6480464	trichostatin A results in increased expression of RAB20 mRNA	CTD	PMID:24935251 and PMID:26272509
Rab20	Mouse	trichostatin A	multiple interactions	ISO	RAB20 (Homo sapiens)	6480464	[NOG protein co-treated with trichostatin A co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of RAB20 mRNA	CTD	PMID:27188386
Rab20	Mouse	trimellitic anhydride	increases expression	ISO	Rab20 (Rattus norvegicus)	6480464	trimellitic anhydride results in increased expression of RAB20 mRNA	CTD	PMID:21893156
Rab20	Mouse	triphenyl phosphate	affects expression	ISO	RAB20 (Homo sapiens)	6480464	triphenyl phosphate affects the expression of RAB20 mRNA	CTD	PMID:37042841
Rab20	Mouse	valproic acid	increases expression	EXP		6480464	Valproic Acid results in increased expression of RAB20 mRNA	CTD	PMID:19136453 and PMID:21427059
Rab20	Mouse	valproic acid	multiple interactions	ISO	RAB20 (Homo sapiens)	6480464	[NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of RAB20 mRNA	CTD	PMID:27188386
Rab20	Mouse	valproic acid	increases expression	ISO	RAB20 (Homo sapiens)	6480464	Valproic Acid results in increased expression of RAB20 mRNA	CTD	PMID:19101580 more ...
Rab20	Mouse	valproic acid	affects expression	ISO	RAB20 (Homo sapiens)	6480464	Valproic Acid affects the expression of RAB20 mRNA	CTD	PMID:25979313
Rab20	Mouse	valproic acid	increases methylation	ISO	RAB20 (Homo sapiens)	6480464	Valproic Acid results in increased methylation of RAB20 gene	CTD	PMID:29154799
Rab20	Mouse	vincristine	decreases expression	ISO	RAB20 (Homo sapiens)	6480464	Vincristine results in decreased expression of RAB20 mRNA	CTD	PMID:23649840
Rab20	Mouse	vorinostat	increases expression	ISO	RAB20 (Homo sapiens)	6480464	vorinostat results in increased expression of RAB20 mRNA	CTD	PMID:26272509
Rab20	Mouse	vorinostat	multiple interactions	ISO	RAB20 (Homo sapiens)	6480464	[NOG protein co-treated with Vorinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of RAB20 mRNA	CTD	PMID:27188386
Rab20	Mouse	zearalenone	decreases expression	ISO	RAB20 (Homo sapiens)	6480464	Zearalenone results in decreased expression of RAB20 mRNA	CTD	PMID:19371625
Rab20	Mouse	zinc dichloride	multiple interactions	ISO	RAB20 (Homo sapiens)	6480464	zinc chloride inhibits the reaction [cobaltous chloride results in increased expression of RAB20 mRNA]	CTD	PMID:22202117
Rab20	Mouse	zinc sulfate	increases expression	ISO	RAB20 (Homo sapiens)	6480464	Zinc Sulfate results in increased expression of RAB20 mRNA	CTD	PMID:16330358

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rab20	Mouse	cellular response to type II interferon	acts_upstream_of_or_within	IDA		2290270	PMID:19144319	MGI	PMID:19144319
Rab20	Mouse	endocytosis	involved_in	IBA	PANTHER:PTN000634658 more ...	2290270		GO_Central	GO_REF:0000033
Rab20	Mouse	intracellular protein transport	involved_in	IBA	PANTHER:PTN001292747 more ...	2290270		GO_Central	GO_REF:0000033
Rab20	Mouse	phagosome acidification	involved_in	ISS	UniProtKB:Q9NX57	2290270		UniProt	GO_REF:0000024
Rab20	Mouse	phagosome acidification	involved_in	ISO	UniProtKB:Q9NX57	2290270		GO_Central	GO_REF:0000119
Rab20	Mouse	phagosome-lysosome fusion	involved_in	ISS	UniProtKB:Q9NX57	2290270		UniProt	GO_REF:0000024
Rab20	Mouse	phagosome-lysosome fusion	involved_in	ISO	UniProtKB:Q9NX57	2290270		GO_Central	GO_REF:0000119
Rab20	Mouse	protein transport	involved_in	IEA	UniProtKB-KW:KW-0653	2290270		UniProt	GO_REF:0000043

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rab20	Mouse	early endosome	is_active_in	IBA	PANTHER:PTN000634601 more ...	2290270		GO_Central	GO_REF:0000033
Rab20	Mouse	endocytic vesicle	is_active_in	IBA	PANTHER:PTN000634566 more ...	2290270		GO_Central	GO_REF:0000033
Rab20	Mouse	endomembrane system	is_active_in	IBA	PANTHER:PTN001292747 more ...	2290270		GO_Central	GO_REF:0000033
Rab20	Mouse	Golgi apparatus	located_in	ISO	UniProtKB:Q9NX57	2290270		GO_Central	GO_REF:0000119
Rab20	Mouse	Golgi apparatus	located_in	IEA	UniProtKB-SubCell:SL-0132	2290270		UniProt	GO_REF:0000044
Rab20	Mouse	intracellular membrane-bounded organelle	located_in	ISO	UniProtKB:Q9NX57	2290270		GO_Central	GO_REF:0000119
Rab20	Mouse	phagocytic vesicle	located_in	ISO	UniProtKB:Q9NX57	2290270		GO_Central	GO_REF:0000119
Rab20	Mouse	phagocytic vesicle	located_in	IDA		2290270	PMID:19144319	MGI	PMID:19144319
Rab20	Mouse	phagocytic vesicle	located_in	ISS	UniProtKB:Q9NX57	2290270		UniProt	GO_REF:0000024
Rab20	Mouse	phagocytic vesicle membrane	located_in	IEA	UniProtKB-SubCell:SL-0205	2290270		UniProt	GO_REF:0000044
Rab20	Mouse	plasma membrane	is_active_in	IBA	PANTHER:PTN000634601 more ...	2290270		GO_Central	GO_REF:0000033

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rab20	Mouse	GTP binding	enables	IEA	UniProtKB-KW:KW-0342	2290270		UniProt	GO_REF:0000043
Rab20	Mouse	GTPase activity	enables	IBA	PANTHER:PTN001292747 more ...	2290270		GO_Central	GO_REF:0000033
Rab20	Mouse	GTPase activity	enables	IEA	InterPro:IPR001806 and InterPro:IPR041836	2290270		InterPro	GO_REF:0000002

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rab20	Mouse	abnormal macrophage physiology		IAGP		5509061		MGI	PMID:28494243
Rab20	Mouse	increased circulating sodium level		IEA		5509061		MGI

#	Reference Title	Reference Citation
1.	Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development.	Ko MS, etal., Development 2000 Apr;127(8):1737-49.
2.	MGDs mouse GO annotations	MGD data from the GO Consortium
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:1555775	PMID:7706395	PMID:8583936	PMID:8889548	PMID:9096117	PMID:10349636	PMID:10922068	PMID:11042159	PMID:11076861	PMID:11217851	PMID:11773082	PMID:11856727
PMID:12466851	PMID:12477932	PMID:12578829	PMID:12904583	PMID:15782199	PMID:16141072	PMID:16141073	PMID:16565260	PMID:16923123	PMID:19144319	PMID:21056597	PMID:21267068
PMID:21873635	PMID:22008794	PMID:22545127	PMID:22960262	PMID:24194600	PMID:25269936	PMID:27626380	PMID:28494243	PMID:38355793

Rab20
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	11,503,390 - 11,528,640 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	11,503,518 - 11,528,710 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	11,453,390 - 11,478,640 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	11,453,518 - 11,478,710 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	11,453,977 - 11,478,499 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	11,453,949 - 11,478,471 (-)	NCBI		MGSCv36	mm8
Celera	8	11,628,822 - 11,653,857 (-)	NCBI		Celera
Cytogenetic Map	8	A1.1	NCBI
cM Map	8	5.73	NCBI

RAB20
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	13	110,523,066 - 110,561,722 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	13	110,523,066 - 110,561,722 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	13	111,175,413 - 111,214,069 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	13	109,973,414 - 110,012,072 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	13	109,973,414 - 110,012,072	NCBI
Celera	13	92,021,471 - 92,060,129 (-)	NCBI		Celera
Cytogenetic Map	13	q34	NCBI
HuRef	13	91,774,840 - 91,813,429 (-)	NCBI		HuRef
CHM1_1	13	111,143,261 - 111,182,508 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	13	109,753,501 - 109,792,327 (-)	NCBI		T2T-CHM13v2.0

Rab20
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	84,721,427 - 84,745,610 (+)	NCBI		GRCr8
mRatBN7.2	16	78,019,337 - 78,043,529 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	78,019,337 - 78,043,529 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	83,299,781 - 83,323,965 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	86,752,438 - 86,776,630 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	81,994,065 - 82,018,501 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	83,358,116 - 83,382,326 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	83,358,116 - 83,382,326 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	82,824,911 - 82,848,168 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	82,871,002 - 82,895,146 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	16	75,818,103 - 75,841,942 (+)	NCBI		Celera
Cytogenetic Map	16	q12.5	NCBI

Rab20
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955404	2,087,580 - 2,088,545 (+)	NCBI	ChiLan1.0	ChiLan1.0

RAB20
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	14	112,019,815 - 112,057,904 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	13	110,703,541 - 110,741,624 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	13	91,660,142 - 91,698,215 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	13	110,778,119 - 110,815,408 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	13	110,778,119 - 110,815,408 (-)	Ensembl	panpan1.1		panPan2

RAB20
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	22	58,825,147 - 58,853,921 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	22	58,825,667 - 58,853,667 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	22	58,534,701 - 58,563,463 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	22	59,447,953 - 59,476,697 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	22	59,447,953 - 59,476,746 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	22	58,948,658 - 58,977,901 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	22	58,940,714 - 58,970,373 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	22	58,976,123 - 59,005,638 (-)	NCBI		UU_Cfam_GSD_1.0

Rab20
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	193,687,535 - 193,716,912 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936472	2,234,873 - 2,264,622 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936472	2,234,826 - 2,264,613 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RAB20
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	11	77,167,059 - 77,188,898 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	11	77,167,052 - 77,188,893 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	11	84,681,262 - 84,703,347 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RAB20
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	88,769,676 - 88,803,384 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	3	88,770,271 - 88,803,177 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666046	45,502,751 - 45,539,015 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rab20
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624793	2,180,419 - 2,198,962 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624793	2,180,803 - 2,199,420 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Rab20
2275 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	177
Count of miRNA genes:	160
Interacting mature miRNAs:	168
Transcripts:	ENSMUST00000033900
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1357525	Pnhdlc3_m	plasma non-HDL cholesterol 3 (mouse)			Not determined		8	7212499	23753815	Mouse
11533914	Mts5_m	mammary tumor susceptibility 5 (mouse)					8	1	30447432	Mouse
13432571	Scvg1_m	subcutaneous vessel growth QTL 1 (mouse)					8	1	24751082	Mouse
14700791	Mencq6_m	meniscus calcification QTL 6 (mouse)					8	11022000	12200000	Mouse
14697703	Stsl1_m	Salmonella typhimurium susceptibility locus 1 (mouse)					8	11350000	17050016	Mouse
1300906	Ap8q_m	alcohol preference 8 QTL (mouse)			Not determined		8	7984189	41984342	Mouse
1301929	Eae24_m	susceptibility to experimental allergic encephalomyelitis 24 (mouse)			Not determined		8	8103201	42103372	Mouse
27226756	Femd2_m	femur midshaft diameter 2, 5 week (mouse)					8	4950000	35067154	Mouse
1301128	Sluc20_m	susceptibility to lung cancer 20 (mouse)			Not determined		8	8103201	42103372	Mouse
4140978	Nilac5_m	nicotine induced locomotor activity 5 (mouse)			Not determined		8	1	31773288	Mouse
1301532	Scc8_m	colon tumor susceptibility 8 (mouse)			Not determined		8	7212499	35110107	Mouse
10412209	Cypr7_m	cytokine production 7 (mouse)			Not determined		8	8103201	42103372	Mouse

AI645545

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	8	11,479,948 - 11,480,086	UniSTS	GRCm38
MGSCv37	8	11,479,948 - 11,480,086	UniSTS	GRCm37
Celera	8	11,655,306 - 11,655,444	UniSTS
Cytogenetic Map	8	A1.1	UniSTS
Whitehead/MRC_RH	8	137.68	UniSTS

Rab20

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	8	A1.1	UniSTS

D8Mit217

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	8	11,455,083 - 11,455,257	UniSTS	GRCm38
MGSCv37	8	11,455,083 - 11,455,257	UniSTS	GRCm37
Celera	8	11,629,928 - 11,630,112	UniSTS
Cytogenetic Map	8	A1.1	UniSTS
cM Map	8	6.0	UniSTS
Whitehead Genetic	8	4.4	UniSTS
Whitehead_YAC	8		UniSTS

C81174

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	8	11,453,719 - 11,453,918	UniSTS	GRCm38
MGSCv37	8	11,453,719 - 11,453,918	UniSTS	GRCm37
Celera	8	11,628,564 - 11,628,763	UniSTS
Cytogenetic Map	8	A1.1	UniSTS
Whitehead/MRC_RH	8	112.34	UniSTS

RH124453

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	8	11,453,930 - 11,454,064	UniSTS	GRCm38
MGSCv37	8	11,453,930 - 11,454,064	UniSTS	GRCm37
Celera	8	11,628,775 - 11,628,909	UniSTS
Cytogenetic Map	8	A1.1	UniSTS

RH143287

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	8	11,478,364 - 11,478,602	UniSTS	GRCm38
MGSCv37	8	11,478,364 - 11,478,602	UniSTS	GRCm37
Celera	8	11,653,722 - 11,653,960	UniSTS
Cytogenetic Map	8	A1.1	UniSTS

RH127021

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	8	11,453,613 - 11,453,812	UniSTS	GRCm38
MGSCv37	8	11,453,613 - 11,453,812	UniSTS	GRCm37
Celera	8	11,628,458 - 11,628,657	UniSTS
Cytogenetic Map	8	A1.1	UniSTS
cM Map	8	4.0	UniSTS
cM Map	8	10.0	UniSTS
Whitehead/MRC_RH	8	137.68	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	NM_011227	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_011242042	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB232614	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC124475	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK145566	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK152454	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK163743	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK164541	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK217678	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC051569	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC089570	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BG066967	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466566	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	M79310	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	X80332	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000033900 ⟹ ENSMUSP00000033900

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	11,503,518 - 11,528,710 (-)	Ensembl
GRCm38.p6 Ensembl	8	11,453,518 - 11,478,710 (-)	Ensembl

RefSeq Acc Id:

NM_011227 ⟹ NP_035357

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	11,503,390 - 11,528,640 (-)	NCBI
GRCm38	8	11,453,390 - 11,478,640 (-)	NCBI
MGSCv37	8	11,453,977 - 11,478,499 (-)	RGD
Celera	8	11,628,822 - 11,653,857 (-)	RGD
cM Map	8		ENTREZGENE

Sequence:

show sequence

GCGCTTCCTCTTTGGCACTTCATCGAGTTCGGATCTCAGGCCAGGGCCACTAGAGTTCGGGGTCCCTGGAGGCCGGGGTCCGCGTCCCCTGGCATCCTGGGCGGGTGACCGAGAAGCGCAGGGGTCAT
CTCCTCCGCGGCTATGCGGAAGCCGGATGGGAAGATCGTACTGCTGGGGGACATGAACGTGGGTAAAACGTCGCTGCTGCAGCGCTACATGGAGCGTCGCTTCCCGGACACGGTCAGCACCGTGGGCG
GCGCCTTCTACCTGAAGCAGTGGCGTTCCTTCAACATCTCCATATGGGACACCGCAGGGCGGGAGCAGTTTCATGGTCTGGGCTCCCTGTACTGCCGCGGAGCGGCCGCTATCATCCTTACATACGAT
GTGAACCACCCACAGAGCCTGTTTGAGCTGGAGGACAGATTCCTGGGCCTGACAGAAACAGCCAACAATGACTGCCTGTTTGCCATTGTGGGGAACAAAGTGGACCTGACCTCGGAGCGGGACACCGA
GGGCGGGGAGAAGGAAGGACCGGCCTCTGGCAAGGTGGGCAGCTGTGTCTCCACCAAGGTACCCAAGCAGGTGCAGCCAGAGGATGCAGTGGCCCTTTACAAGAAGATCCTGAAGTACAAGATGCTGG
ATGAGAGGGAGATGCCAGCTGCTGAGCAGATGTGCTTCGAGACCAGTGCCAAGACTGGATACAATGTGGACCTCCTCTTTGAAACCTTGTTTGACCTGGTGGTACCTATGATCATGCGGCAGAGGGCT
GAGGAGTCAGATCAGACTGTGGATATAGCCAGCTGCAAAACACCCAAACAGACTAGATCCGGGTGTTGTGCCTAATGGCAGGAGGTCTGTCTTGGCATGTGTGTGTGTGAGCCACTGGGCTAAGAAGT
CTCACACAGCACTGGGTACCGAGGACAATAGGCAGAGTGACCACCAGCTGCTAATACAGGCCAGAGTGCCCAGCAACCTCTGGGCATCCGGAGGTGGCACTCAAACCCCCTGTGGAGCCTGCCTGGTG
CCACCTCATCTACTGCCCTATGCATCTATCTCTCATGGAGATACCACCATGGAGCCTGCAGTCTGAAGACCTGCCTTGGACTGGTCTTGACTCTGCAGTCACTACGTCCTGCACTGTGTCTGTCCTCA
GAGGCCTGTGTCCACTGTGATTCATATATGGTCTTCCTGTTTGATACCTGTACCTTGATATGTTATGATAATGATACTCCACTTTTAATTTATATAAAATCAGGAATGGCTGTTTTTATACTGGGTGA
GGCCAGATGGGCTATACATTATTAAAAAGGATTTGGGGAAAAGCCTTGTTCTTGGGAATGTTTGACTTTATTTGAACCACAGGAAATTCCTTAATTCTGGGAGGTGTAATGGGGGCTGTTGGTGGGGA
TGATGGTTACCATGAAGCTGTCATTAAATGTGTGACAGTGAA

hide sequence

RefSeq Acc Id:

XM_011242042 ⟹ XP_011240344

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	11,503,513 - 11,521,319 (-)	NCBI
GRCm38	8	11,453,513 - 11,471,326 (-)	NCBI

Sequence:

show sequence

ACTGTGTTGAGGACATAGGAGAAGCAACTCCACACTGTTCTGGGGATGTGTGCTCCTCTGTAAT
CCCATGCTGGGGTAAAAGTGGGGGTGGAGGTGGAGACAAAGAGCTCCTGGGGTTTAGCCTGGCTGGAAACCAGCAAACTTCAGCTTCAGCAAGAGATCCTGTCTCAGAGCAGTGGAGATCAATGGGGG
AACATGTCTGCGATCCTTCTCCAAGGGCACACAGGGCGGGAGCAGTTTCATGGTCTGGGCTCCCTGTACTGCCGCGGAGCGGCCGCTATCATCCTTACATACGATGTGAACCACCCACAGAGCCTGTT
TGAGCTGGAGGACAGATTCCTGGGCCTGACAGAAACAGCCAACAATGACTGCCTGTTTGCCATTGTGGGGAACAAAGTGGACCTGACCTCGGAGCGGGACACCGAGGGCGGGGAGAAGGAAGGACCGG
CCTCTGGCAAGGTGGGCAGCTGTGTCTCCACCAAGGTACCCAAGCAGGTGCAGCCAGAGGATGCAGTGGCCCTTTACAAGAAGATCCTGAAGTACAAGATGCTGGATGAGAGGGAGATGCCAGCTGCT
GAGCAGATGTGCTTCGAGACCAGTGCCAAGACTGGATACAATGTGGACCTCCTCTTTGAAACCTTGTTTGACCTGGTGGTACCTATGATCATGCGGCAGAGGGCTGAGGAGTCAGATCAGACTGTGGA
TATAGCCAGCTGCAAAACACCCAAACAGACTAGATCCGGGTGTTGTGCCTAATGGCAGGAGGTCTGTCTTGGCATGTGTGTGTGTGAGCCACTGGGCTAAGAAGTCTCACACAGCACTGGGTACCGAG
GACAATAGGCAGAGTGACCACCAGCTGCTAATACAGGCCAGAGTGCCCAGCAACCTCTGGGCATCCGGAGGTGGCACTCAAACCCCCTGTGGAGCCTGCCTGGTGCCACCTCATCTACTGCCCTATGC
ATCTATCTCTCATGGAGATACCACCATGGAGCCTGCAGTCTGAAGACCTGCCTTGGACTGGTCTTGACTCTGCAGTCACTACGTCCTGCACTGTGTCTGTCCTCAGAGGCCTGTGTCCACTGTGATTC
ATATATGGTCTTCCTGTTTGATACCTGTACCTTGATATGTTATGATAATGATACTCCACTTTTAATTTATATAAAATCAGGAATGGCTGTTTTTATACTGGGTGAGGCCAGATGGGCTATACATTATT
AAAAAGGATTTGGGGAAAAGCCTT

hide sequence


Protein RefSeqs	NP_035357	(Get FASTA)	NCBI Sequence Viewer
	XP_011240344	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH89570	(Get FASTA)	NCBI Sequence Viewer
	AAK14834	(Get FASTA)	NCBI Sequence Viewer
	BAE26515	(Get FASTA)	NCBI Sequence Viewer
	BAE31232	(Get FASTA)	NCBI Sequence Viewer
	BAE37830	(Get FASTA)	NCBI Sequence Viewer
	BAF02876	(Get FASTA)	NCBI Sequence Viewer
	CAA56582	(Get FASTA)	NCBI Sequence Viewer
	EDL22061	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000033900
	ENSMUSP00000033900.6
GenBank Protein	P35295	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_035357 ⟸ NM_011227

- UniProtKB:

P35295 (UniProtKB/Swiss-Prot), Q3TPA7 (UniProtKB/TrEMBL), Q3ULD3 (UniProtKB/TrEMBL), Q5FW79 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MRKPDGKIVLLGDMNVGKTSLLQRYMERRFPDTVSTVGGAFYLKQWRSFNISIWDTAGREQFHGLGSLYCRGAAAIILTYDVNHPQSLFELEDRFLGLTETANNDCLFAIVGNKVDLTSERDTEGGEK
EGPASGKVGSCVSTKVPKQVQPEDAVALYKKILKYKMLDEREMPAAEQMCFETSAKTGYNVDLLFETLFDLVVPMIMRQRAEESDQTVDIASCKTPKQTRSGCCA

hide sequence

RefSeq Acc Id:	XP_011240344 ⟸ XM_011242042
- Peptide Label:	isoform X1
- Sequence:	show sequence MSAILLQGHTGREQFHGLGSLYCRGAAAIILTYDVNHPQSLFELEDRFLGLTETANNDCLFAIVGNKVDLTSERDTEGGEKEGPASGKVGSCVSTKVPKQVQPEDAVALYKKILKYKMLDEREMPAAE QMCFETSAKTGYNVDLLFETLFDLVVPMIMRQRAEESDQTVDIASCKTPKQTRSGCCA hide sequence

Ensembl Acc Id:

ENSMUSP00000033900 ⟸ ENSMUST00000033900

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P35295-F1-model_v2	AlphaFold	P35295	1-233	view protein structure

RGD ID:

6843653

Promoter ID:

MM_KWN:53617

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Kidney, Liver

Transcripts:

ENSMUST00000033900

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	8	11,478,436 - 11,479,282 (-)	MPROMDB

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000031504	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000033900	ENTREZGENE
	ENSMUST00000033900.7	UniProtKB/Swiss-Prot
Gene3D-CATH	3.40.50.300	UniProtKB/Swiss-Prot
InterPro	P-loop_NTPase	UniProtKB/Swiss-Prot
	Rab20	UniProtKB/Swiss-Prot
	Small_GTP-bd_dom	UniProtKB/Swiss-Prot
	Small_GTPase	UniProtKB/Swiss-Prot
KEGG Report	mmu:19332	UniProtKB/Swiss-Prot
MGD	MGI:102789	ENTREZGENE
NCBI Gene	19332	ENTREZGENE
PANTHER	DRAB5-RELATED	UniProtKB/Swiss-Prot
Pfam	Ras	UniProtKB/Swiss-Prot
PhenoGen	Rab20	PhenoGen
PRINTS	RASTRNSFRMNG	UniProtKB/Swiss-Prot
PROSITE	RAB	UniProtKB/Swiss-Prot
SMART	RAB	UniProtKB/Swiss-Prot
	RAS	UniProtKB/Swiss-Prot
	RHO	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF52540	UniProtKB/Swiss-Prot
UniProt	P35295	ENTREZGENE
	Q3TPA7	ENTREZGENE, UniProtKB/TrEMBL
	Q3ULD3	ENTREZGENE, UniProtKB/TrEMBL
	Q5FW79	ENTREZGENE, UniProtKB/TrEMBL
	RAB20_MOUSE	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar

Mammalian Phenotype