RAB20 (RAB20, member RAS oncogene family)

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Gene: RAB20 (RAB20, member RAS oncogene family) Sus scrofa

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Symbol:

RAB20

Name:

RAB20, member RAS oncogene family (Ensembl:RAB20, member RAS onco family)

RGD ID:

13876750

Description:

ENCODES a protein that exhibits GTP binding (inferred); GTPase activity (inferred); INVOLVED IN cellular response to type II interferon (ortholog); ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); COVID-19 (ortholog); factor X deficiency (ortholog); FOUND IN Golgi apparatus (inferred); intracellular membrane-bounded organelle (inferred); phagocytic vesicle (inferred); INTERACTS WITH deoxynivalenol

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

ras-related protein Rab-20

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	11	77,167,059 - 77,188,898 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	11	77,167,052 - 77,188,893 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	11	84,681,262 - 84,703,347 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Anal Atresia, Hypospadias, and Penoscrotal Inversion (ISO)

COVID-19 (ISO)

factor X deficiency (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

deoxynivalenol (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to type II interferon (IEA,ISO)

intracellular protein transport (IBA)

phagosome acidification (IEA)

phagosome-lysosome fusion (IEA)

Cellular Component

endomembrane system (IBA)

Golgi apparatus (IEA)

intracellular membrane-bounded organelle (IEA)

phagocytic vesicle (IEA)

Molecular Function

GTP binding (IEA)

GTPase activity (IBA,IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

RAB20
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	11	77,167,059 - 77,188,898 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	11	77,167,052 - 77,188,893 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	11	84,681,262 - 84,703,347 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RAB20
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	13	110,523,066 - 110,561,722 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	13	110,523,066 - 110,561,722 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	13	111,175,413 - 111,214,069 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	13	109,973,414 - 110,012,072 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	13	109,973,414 - 110,012,072	NCBI
Celera	13	92,021,471 - 92,060,129 (-)	NCBI		Celera
Cytogenetic Map	13	q34	NCBI
HuRef	13	91,774,840 - 91,813,429 (-)	NCBI		HuRef
CHM1_1	13	111,143,261 - 111,182,508 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	13	109,753,501 - 109,792,327 (-)	NCBI		T2T-CHM13v2.0

Rab20
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	11,503,390 - 11,528,640 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	11,503,518 - 11,528,710 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	11,453,390 - 11,478,640 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	11,453,518 - 11,478,710 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	11,453,977 - 11,478,499 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	11,453,949 - 11,478,471 (-)	NCBI		MGSCv36	mm8
Celera	8	11,628,822 - 11,653,857 (-)	NCBI		Celera
Cytogenetic Map	8	A1.1	NCBI
cM Map	8	5.73	NCBI

Rab20
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	84,721,427 - 84,745,610 (+)	NCBI		GRCr8
mRatBN7.2	16	78,019,337 - 78,043,529 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	78,019,337 - 78,043,529 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	83,299,781 - 83,323,965 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	86,752,438 - 86,776,630 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	81,994,065 - 82,018,501 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	83,358,116 - 83,382,326 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	83,358,116 - 83,382,326 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	82,824,911 - 82,848,168 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	82,871,002 - 82,895,146 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	16	75,818,103 - 75,841,942 (+)	NCBI		Celera
Cytogenetic Map	16	q12.5	NCBI

Rab20
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955404	2,087,580 - 2,088,545 (+)	NCBI	ChiLan1.0	ChiLan1.0

RAB20
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	14	112,019,815 - 112,057,904 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	13	110,703,541 - 110,741,624 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	13	91,660,142 - 91,698,215 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	13	110,778,119 - 110,815,408 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	13	110,778,119 - 110,815,408 (-)	Ensembl	panpan1.1		panPan2

RAB20
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	22	58,825,147 - 58,853,921 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	22	58,825,667 - 58,853,667 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	22	58,534,701 - 58,563,463 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	22	59,447,953 - 59,476,697 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	22	59,447,953 - 59,476,746 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	22	58,948,658 - 58,977,901 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	22	58,940,714 - 58,970,373 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	22	58,976,123 - 59,005,638 (-)	NCBI		UU_Cfam_GSD_1.0

Rab20
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	193,687,535 - 193,716,912 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936472	2,234,873 - 2,264,622 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936472	2,234,826 - 2,264,613 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RAB20
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	88,769,676 - 88,803,384 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	3	88,770,271 - 88,803,177 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666046	45,502,751 - 45,539,015 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rab20
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624793	2,180,419 - 2,198,962 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624793	2,180,803 - 2,199,420 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in RAB20
795 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	hemolymphoid system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
10	4	20	3	2	5	13	11	20	3	6	3

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003482931	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000079	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK237269	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01003658	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000026731 ⟹ ENSSSCP00000021682

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	11	77,167,059 - 77,188,898 (-)	Ensembl

RefSeq Acc Id:

XM_003482931 ⟹ XP_003482979

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	11	77,167,052 - 77,188,893 (-)	NCBI

Sequence:

show sequence

AGGCGGGGCGGGGCGGGGCCCGGGCGCCCCCGACCTGGTGCTGACCGCCGCGGTCTGGACACCT
TGAGTGGGCGTCGGGCTGGGTCCCCGGCTCCTTCCCAGCGCGGACACGCGCTTCCTCTTCCGCG
TTCCCAGGCGTCCAGACCGGAGGGTCGCCACGAGTTCGGGGTCCCCGCGAGTCCTAGTCTCCGC
GAGTTCCGAGTTTGAGCCTTCTCGGGGAGCCTGGCTGCTCCTGCCGCGCCCCGGGCACAGGGGG
CAGAGGGCACGGGAAAAGGGGGGGGCTCCTGCGGGAAAATGAGAAAGCCAGACGGGAAGATCGT
GCTTTTGGGGGACATGAACGTGGGCAAGACGTCGCTGCTGCAGAGGTACATGGAGCGGCGCTTC
CCGGACACAGTCAGCACGGTGGGCGGCGCCTTCTACCTGAAGCAGTGGCGTTCCTACAACATCT
CCATCTGGGACACTGCAGGGCGGGAGCAGTTCCACGGCCTGGGCTCCATGTACTGCCGGGGGGC
GGCCGCCGTCATCCTCACTTACGACGTGAACCACGCCCAGAGCCTGCTGGAGCTGGAGGACCGG
TTCCTGGGCCTGACGGACACGGCCAGCGCCGACTGCCTCTTCGCCATCGTGGGGAACAAGGTGG
ACCTGAGCGAGGAGGGGCCTGGGGACGGCGGCCAGGACGGAGGGCACGGCCCCGGGCCGGCCGG
CGTTGGCGCCGCGCCCAGGCTGCCCAAGCAGGTGCAGCCAGAGGACGCGGTGGCCCTGTACAAG
AAGATCCTCAAGTACAAGATGCTGGACGAGAAGGACGTGCCGGCCGCCGAGCAGATGTGCTTCG
AGACCAGCGCCAAGACCGGGCACAACGTGGATCTGCTGTTCGAAACCCTCTTTGACATGGTGGT
GCCTGTGATCCTGCGGCAGAGGGCCCAGGGGCCCCCGCAGACCGTGGACATCGCCCCCTGCGGG
CCGCCCGCACGGACCAGATCTGGGTGCTGCGCCTGACCCGCCGGAGCGGAGGCCGGGCCGTCTG
CGGCCGGAGGACCGGAGGAGCAGAGCCGGGGCGCGGCCTCGTGGACGTGCACACAGAGGACGTG
GGGAGGCAGTGACCGCCGGTCACCGCGGGAAGGCCAGCGTGACTGTCCCCTCGTGTGCATTGTC
GCCGTGGGCGGTGGGGAGCCGGCGATGGTCCTCGGAAGCCACCTGCCGAGCCCTGGCCGCCCTG
GGCTGACAGCCGGGCCTGGTGGAGGGCGTCCGCCTGTCCCGGCCCCTGTGTGGCTGCCACATGT
CTCTCTTCACTGTGATTTACCTTTGGTTTCTTCTTGATGCATCGTCATGATTGTTGATAAATGC
TAATTTATACAAAATCAGGAATCACCTTTTATACCGCTGCAGCATCGTGAGCCACTTGTATTAT
TAAAACGAATTTTGAGTAGAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_003482979	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000021682
	ENSSSCP00000021682.1
	ENSSSCP00015003579.1
	ENSSSCP00025046669.1
	ENSSSCP00030000722.1
	ENSSSCP00035009057.1
	ENSSSCP00040042131.1
	ENSSSCP00045032478.1
	ENSSSCP00050047197.1
	ENSSSCP00055008791.1
	ENSSSCP00060027522.1
	ENSSSCP00065030855.1
	ENSSSCP00070023749.1

RefSeq Acc Id:

XP_003482979 ⟸ XM_003482931

- UniProtKB:

I3LCA7 (UniProtKB/TrEMBL), A0A4X1U225 (UniProtKB/TrEMBL), A0A8D0V520 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MRKPDGKIVLLGDMNVGKTSLLQRYMERRFPDTVSTVGGAFYLKQWRSYNISIWDTAGREQFHG
LGSMYCRGAAAVILTYDVNHAQSLLELEDRFLGLTDTASADCLFAIVGNKVDLSEEGPGDGGQD
GGHGPGPAGVGAAPRLPKQVQPEDAVALYKKILKYKMLDEKDVPAAEQMCFETSAKTGHNVDLL
FETLFDMVVPVILRQRAQGPPQTVDIAPCGPPARTRSGCCA

hide sequence

Ensembl Acc Id:

ENSSSCP00000021682 ⟸ ENSSSCT00000026731

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000022719	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00015006701	UniProtKB/TrEMBL
	ENSSSCG00025075866	UniProtKB/TrEMBL
	ENSSSCG00030001274	UniProtKB/TrEMBL
	ENSSSCG00035018716	UniProtKB/TrEMBL
	ENSSSCG00040069433	UniProtKB/TrEMBL
	ENSSSCG00045027482	UniProtKB/TrEMBL
	ENSSSCG00050077609	UniProtKB/TrEMBL
	ENSSSCG00055005726	UniProtKB/TrEMBL
	ENSSSCG00060047252	UniProtKB/TrEMBL
	ENSSSCG00065051688	UniProtKB/TrEMBL
	ENSSSCG00070014541	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000026731	ENTREZGENE
	ENSSSCT00000026731.4	UniProtKB/TrEMBL
	ENSSSCT00015008885.1	UniProtKB/TrEMBL
	ENSSSCT00025104783.1	UniProtKB/TrEMBL
	ENSSSCT00030001666.1	UniProtKB/TrEMBL
	ENSSSCT00035024179.1	UniProtKB/TrEMBL
	ENSSSCT00040095119.1	UniProtKB/TrEMBL
	ENSSSCT00045046790.1	UniProtKB/TrEMBL
	ENSSSCT00050106835.1	UniProtKB/TrEMBL
	ENSSSCT00055011136.1	UniProtKB/TrEMBL
	ENSSSCT00060064162.1	UniProtKB/TrEMBL
	ENSSSCT00065070777.1	UniProtKB/TrEMBL
	ENSSSCT00070028510.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.300	UniProtKB/TrEMBL
InterPro	P-loop_NTPase	UniProtKB/TrEMBL
	Rab20	UniProtKB/TrEMBL
	Small_GTP-bd_dom	UniProtKB/TrEMBL
	Small_GTPase	UniProtKB/TrEMBL
KEGG Report	ssc:100737446	UniProtKB/TrEMBL
NCBI Gene	RAB20	ENTREZGENE
PANTHER	DRAB5-RELATED	UniProtKB/TrEMBL
	RAS-RELATED PROTEIN RAB-20	UniProtKB/TrEMBL
Pfam	Ras	UniProtKB/TrEMBL
PRINTS	RASTRNSFRMNG	UniProtKB/TrEMBL
PROSITE	RAB	UniProtKB/TrEMBL
SMART	RAB	UniProtKB/TrEMBL
	RAS	UniProtKB/TrEMBL
	RHO	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	A0A4X1U225	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0V520	ENTREZGENE, UniProtKB/TrEMBL
	I3LCA7	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:98243	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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