Rhbdd1 (rhomboid domain containing 1) - Rat Genome Database

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Gene: Rhbdd1 (rhomboid domain containing 1) Mus musculus
Analyze
Symbol: Rhbdd1
Name: rhomboid domain containing 1
RGD ID: 1315115
MGI Page MGI
Description: Enables peptidase activity. Involved in several processes, including cellular response to unfolded protein; membrane protein proteolysis; and positive regulation of protein processing. Located in endoplasmic reticulum membrane and endoplasmic reticulum quality control compartment. Orthologous to human RHBDD1 (rhomboid domain containing 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4930418P06Rik; MGC7809; mRHBDD1; rhomboid domain-containing protein 1; rhomboid-like protein 4; rhomboid-related protein 4; RRP4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39182,294,178 - 82,423,087 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl182,294,173 - 82,423,087 (+)EnsemblGRCm39 Ensembl
GRCm38182,316,457 - 82,445,366 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl182,316,452 - 82,445,366 (+)EnsemblGRCm38mm10GRCm38
MGSCv37182,313,154 - 82,441,941 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36182,219,343 - 82,324,390 (+)NCBIMGSCv36mm8
Celera182,385,093 - 82,514,031 (+)NCBICelera
Cytogenetic Map1C5NCBI
cM Map142.08NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rhbdd1Mousepancreatic cancer  ISORHBDD1 (Homo sapiens)11554173CTD Direct Evidence: therapeuticCTDPMID:35442567

1 to 20 of 61 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rhbdd1Mouse(+)-schisandrin B multiple interactionsISORhbdd1 (Rattus norvegicus)6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of RHBDD1 mRNA]CTDPMID:31150632
Rhbdd1Mouse(1->4)-beta-D-glucan multiple interactionsEXP 6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of RHBDD1 mRNACTDPMID:36331819
Rhbdd1Mouse1,2-dimethylhydrazine decreases expressionEXP 64804641 and 2-Dimethylhydrazine results in decreased expression of RHBDD1 mRNACTDPMID:22206623
Rhbdd1Mouse17beta-estradiol increases expressionEXP 6480464Estradiol results in increased expression of RHBDD1 mRNACTDPMID:39298647
Rhbdd1Mouse2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of RHBDD1 mRNACTDPMID:21570461
Rhbdd1Mouse3,3',5,5'-tetrabromobisphenol A increases expressionEXP 6480464tetrabromobisphenol A results in increased expression of RHBDD1 mRNACTDPMID:25172293
Rhbdd1Mouse4,4'-sulfonyldiphenol increases expressionEXP 6480464bisphenol S results in increased expression of RHBDD1 mRNACTDPMID:39298647
Rhbdd1Mouse6-propyl-2-thiouracil decreases expressionISORhbdd1 (Rattus norvegicus)6480464Propylthiouracil results in decreased expression of RHBDD1 mRNACTDPMID:24780913 and PMID:36843608
Rhbdd1Mouseacetamide decreases expressionISORhbdd1 (Rattus norvegicus)6480464acetamide results in decreased expression of RHBDD1 mRNACTDPMID:31881176
Rhbdd1Mouseaflatoxin B1 decreases expressionEXP 6480464Aflatoxin B1 results in decreased expression of RHBDD1 mRNACTDPMID:19770486
Rhbdd1Mouseaflatoxin B1 increases methylationISORHBDD1 (Homo sapiens)6480464Aflatoxin B1 results in increased methylation of RHBDD1 geneCTDPMID:27153756
Rhbdd1MouseAflatoxin B2 alpha decreases methylationISORHBDD1 (Homo sapiens)6480464aflatoxin B2 results in decreased methylation of RHBDD1 promoterCTDPMID:30157460
Rhbdd1Mousearistolochic acid A decreases expressionISORHBDD1 (Homo sapiens)6480464aristolochic acid I results in decreased expression of RHBDD1 mRNACTDPMID:33212167
Rhbdd1Mousearsane affects methylationISORHBDD1 (Homo sapiens)6480464Arsenic affects the methylation of RHBDD1 geneCTDPMID:25304211
Rhbdd1Mousearsenic atom affects methylationISORHBDD1 (Homo sapiens)6480464Arsenic affects the methylation of RHBDD1 geneCTDPMID:25304211
Rhbdd1Mousearsenite(3-) multiple interactionsISORHBDD1 (Homo sapiens)6480464arsenite inhibits the reaction [G3BP1 protein binds to RHBDD1 mRNA]CTDPMID:32406909
Rhbdd1Mouseatrazine affects methylationISORhbdd1 (Rattus norvegicus)6480464Atrazine affects the methylation of RHBDD1 geneCTDPMID:35440735
Rhbdd1Mouseazathioprine increases expressionISORHBDD1 (Homo sapiens)6480464Azathioprine results in increased expression of RHBDD1 mRNACTDPMID:22623647
Rhbdd1Mousebenzo[a]pyrene decreases expressionISORHBDD1 (Homo sapiens)6480464Benzo(a)pyrene results in decreased expression of RHBDD1 mRNACTDPMID:20064835
Rhbdd1Mousebenzo[a]pyrene increases methylationISORHBDD1 (Homo sapiens)6480464Benzo(a)pyrene results in increased methylation of RHBDD1 promoterCTDPMID:27901495

1 to 20 of 61 rows

Biological Process
1 to 20 of 20 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rhbdd1Mouseapoptotic process involved_inIEAUniProtKB-KW:KW-00532290270 UniProtGO_REF:0000043
Rhbdd1Mousecellular response to unfolded protein involved_inIBAPANTHER:PTN008678216 more ...2290270 GO_CentralGO_REF:0000033
Rhbdd1Mousecellular response to unfolded protein involved_inIDA 2290270 PMID:22795130UniProtPMID:22795130
Rhbdd1Mousecellular response to UV involved_inIDA 2290270 PMID:19358743UniProtPMID:19358743
Rhbdd1MouseERAD pathway involved_inIDA 2290270 PMID:22795130UniProtPMID:22795130
Rhbdd1Mousemembrane protein intracellular domain proteolysis involved_inIDA 2290270 PMID:22795130UniProtPMID:22795130
Rhbdd1Mousemembrane protein proteolysis involved_inISOUniProtKB:Q8TEB92290270 GO_CentralGO_REF:0000119
Rhbdd1Mousemembrane protein proteolysis involved_inISSUniProtKB:Q8TEB9-12290270 PMID:18953687 and PMID:22624035UniProtPMID:18953687 and PMID:22624035
Rhbdd1Mousemembrane protein proteolysis involved in retrograde protein transport, ER to cytosol involved_inIDA 2290270 PMID:22795130ParkinsonsUK-UCLPMID:22795130
Rhbdd1Mousenegative regulation of apoptotic process involved_inIMP 2290270 PMID:19358743UniProtPMID:19358743
Rhbdd1Mousenegative regulation of apoptotic process involved_inISOUniProtKB:Q8TEB92290270 GO_CentralGO_REF:0000119
Rhbdd1Mousenegative regulation of apoptotic process involved_inIBAPANTHER:PTN008678216 more ...2290270 GO_CentralGO_REF:0000033
Rhbdd1Mousepositive regulation of protein catabolic process involved_inISSUniProtKB:Q8TEB9-12290270 PMID:18953687 and PMID:22624035UniProtPMID:18953687 and PMID:22624035
Rhbdd1Mousepositive regulation of protein catabolic process involved_inISOUniProtKB:Q8TEB92290270 GO_CentralGO_REF:0000119
Rhbdd1Mousepositive regulation of protein processing involved_inIDA 2290270 PMID:22795130UniProtPMID:22795130
Rhbdd1Mousepositive regulation of secretion involved_inISOUniProtKB:Q8TEB92290270 GO_CentralGO_REF:0000119
Rhbdd1Mousepositive regulation of secretion involved_inISSUniProtKB:Q8TEB9-12290270 PMID:22624035UniProtPMID:22624035
Rhbdd1Mousepost-translational protein modification involved_inIDA 2290270 PMID:22795130UniProtPMID:22795130
Rhbdd1Mouseregulation of male germ cell proliferation NOT|involved_inIMP 2290270 PMID:19358743UniProtPMID:19358743
Rhbdd1Mousespermatid differentiation involved_inIMP 2290270 PMID:19358743UniProtPMID:19358743
1 to 20 of 20 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rhbdd1Mouseendoplasmic reticulum is_active_inIBAPANTHER:PTN008678216 more ...2290270 GO_CentralGO_REF:0000033
Rhbdd1Mouseendoplasmic reticulum located_inISOUniProtKB:Q8TEB92290270 GO_CentralGO_REF:0000119
Rhbdd1Mouseendoplasmic reticulum membrane located_inIDA 2290270 PMID:22795130UniProtPMID:22795130
Rhbdd1Mouseendoplasmic reticulum quality control compartment located_inIDA 2290270 PMID:22795130UniProtPMID:22795130
Rhbdd1Mousemitochondrial membrane located_inIEAUniProtKB-SubCell:SL-01712290270 UniProtGO_REF:0000044

Molecular Function

  


#
Reference Title
Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12904583   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073   PMID:18953687   PMID:19358743  
PMID:21677750   PMID:21873635   PMID:22624035   PMID:22795130   PMID:32968282   PMID:35436469   PMID:36825753   PMID:38355793   PMID:38453906   PMID:38992438  



Rhbdd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39182,294,178 - 82,423,087 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl182,294,173 - 82,423,087 (+)EnsemblGRCm39 Ensembl
GRCm38182,316,457 - 82,445,366 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl182,316,452 - 82,445,366 (+)EnsemblGRCm38mm10GRCm38
MGSCv37182,313,154 - 82,441,941 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36182,219,343 - 82,324,390 (+)NCBIMGSCv36mm8
Celera182,385,093 - 82,514,031 (+)NCBICelera
Cytogenetic Map1C5NCBI
cM Map142.08NCBI
RHBDD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382226,800,159 - 226,999,210 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2226,835,581 - 226,999,215 (+)EnsemblGRCh38hg38GRCh38
GRCh372227,664,875 - 227,863,926 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362227,409,017 - 227,569,836 (+)NCBINCBI36Build 36hg18NCBI36
Celera2221,470,201 - 221,633,451 (+)NCBICelera
Cytogenetic Map2q36.3NCBI
HuRef2219,544,272 - 219,707,358 (+)NCBIHuRef
CHM1_12227,706,529 - 227,869,795 (+)NCBICHM1_1
T2T-CHM13v2.02227,283,017 - 227,481,905 (+)NCBIT2T-CHM13v2.0
Rhbdd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8991,076,786 - 91,196,719 (+)NCBIGRCr8
mRatBN7.2983,630,037 - 83,748,690 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl983,630,063 - 83,748,689 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx992,083,454 - 92,176,482 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0997,211,935 - 97,304,967 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0995,594,879 - 95,687,904 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0988,110,731 - 88,229,462 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl988,110,731 - 88,229,479 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0987,859,493 - 87,978,041 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4981,685,464 - 81,778,714 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1981,868,882 - 81,962,132 (+)NCBI
Celera981,097,666 - 81,190,159 (+)NCBICelera
Cytogenetic Map9q34NCBI
Rhbdd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554537,528,916 - 7,644,477 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554537,527,090 - 7,656,689 (-)NCBIChiLan1.0ChiLan1.0
RHBDD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213129,456,976 - 129,621,031 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B129,472,216 - 129,634,861 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B114,041,381 - 114,245,220 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B232,895,653 - 233,057,578 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B232,897,487 - 233,057,578 (+)Ensemblpanpan1.1panPan2
RHBDD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12539,719,474 - 39,844,634 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2539,719,872 - 39,842,289 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2540,337,654 - 40,462,607 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02539,967,748 - 40,092,733 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2539,967,854 - 40,092,723 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12539,904,272 - 40,029,226 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02539,739,172 - 39,864,134 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02539,918,066 - 40,043,073 (+)NCBIUU_Cfam_GSD_1.0
Rhbdd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303181,910,526 - 182,032,873 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365258,906,631 - 9,004,372 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365258,906,848 - 9,028,792 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RHBDD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15128,346,373 - 128,469,213 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115128,346,315 - 128,499,151 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215142,019,675 - 142,047,210 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RHBDD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110112,882,789 - 113,018,889 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10112,882,789 - 113,020,732 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604086,426,704 - 86,590,968 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rhbdd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248431,219,808 - 1,360,135 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248431,217,655 - 1,362,406 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Rhbdd1
5916 total Variants

Predicted Target Of
Summary Value
Count of predictions:1841
Count of miRNA genes:525
Interacting mature miRNAs:643
Transcripts:ENSMUST00000027322, ENSMUST00000140020
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 52 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1357847Jckm2_mjuvenile cystic kidney modifier 2 (mouse)Not determined174991977133290937Mouse
4142394Mssq1_mmandible size and shape QTL 1 (mouse)Not determined73615692107615830Mouse
4141625Emo4_memotionality 4 (mouse)Not determined6807134586235027Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
1558928Mord2_mmodifier of retinal degeneration 2 (mouse)Not determined177123115110536075Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
14697706Stsl3a_mSalmonella typhimurium susceptibility locus 3a (mouse)17747663795827725Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139132808126445310Mouse
1302146Cocrb1_mcocaine related behavior 1 (mouse)Not determined170133533104139557Mouse

1 to 10 of 52 rows
UniSTS:234164  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38182,329,038 - 82,329,296UniSTSGRCm38
MGSCv37182,325,613 - 82,325,871UniSTSGRCm37
Celera182,397,558 - 82,397,816UniSTS
Cytogenetic Map1C5UniSTS
BB223204  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38182,319,581 - 82,319,681UniSTSGRCm38
MGSCv37182,316,156 - 82,316,256UniSTSGRCm37
Celera182,388,095 - 82,388,195UniSTS
Cytogenetic Map1C5UniSTS
Whitehead/MRC_RH11166.31UniSTS






1 to 21 of 21 rows
RefSeq Transcripts NM_001122685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_029777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006496574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011238714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC137845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC160543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK015167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK076751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK079448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK142277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY973322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC004711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC005518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY324588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF616726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 21 of 21 rows

Ensembl Acc Id: ENSMUST00000027322   ⟹   ENSMUSP00000027322
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl182,294,173 - 82,423,087 (+)Ensembl
GRCm38.p6 Ensembl182,316,452 - 82,445,366 (+)Ensembl
Ensembl Acc Id: ENSMUST00000140020   ⟹   ENSMUSP00000137770
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl182,316,770 - 82,423,087 (+)Ensembl
GRCm38.p6 Ensembl182,339,049 - 82,445,366 (+)Ensembl
Ensembl Acc Id: ENSMUST00000187475
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl182,294,363 - 82,297,451 (+)Ensembl
GRCm38.p6 Ensembl182,316,642 - 82,319,730 (+)Ensembl
RefSeq Acc Id: NM_001122685   ⟹   NP_001116157
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39182,316,770 - 82,423,087 (+)NCBI
GRCm38182,339,049 - 82,445,366 (+)NCBI
MGSCv37182,313,154 - 82,441,941 (+)RGD
Celera182,385,093 - 82,514,031 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_029777   ⟹   NP_084053
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39182,294,300 - 82,423,087 (+)NCBI
GRCm38182,316,579 - 82,445,366 (+)NCBI
MGSCv37182,313,154 - 82,441,941 (+)RGD
Celera182,385,093 - 82,514,031 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006496574   ⟹   XP_006496637
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39182,294,240 - 82,423,087 (+)NCBI
GRCm38182,316,529 - 82,445,366 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011238714   ⟹   XP_011237016
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39182,294,178 - 82,364,309 (+)NCBI
GRCm38182,316,457 - 82,386,588 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030243522   ⟹   XP_030099382
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39182,316,770 - 82,364,309 (+)NCBI
GRCm38182,339,046 - 82,386,588 (+)NCBI
Sequence:
RefSeq Acc Id: NP_084053   ⟸   NM_029777
- UniProtKB: Q99K13 (UniProtKB/Swiss-Prot),   Q9D5L8 (UniProtKB/Swiss-Prot),   Q8BHC7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001116157   ⟸   NM_001122685
- UniProtKB: Q99K13 (UniProtKB/Swiss-Prot),   Q9D5L8 (UniProtKB/Swiss-Prot),   Q8BHC7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006496637   ⟸   XM_006496574
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011237016   ⟸   XM_011238714
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_030099382   ⟸   XM_030243522
- Peptide Label: isoform X2

Name Modeler Protein Id AA Range Protein Structure
AF-Q8BHC7-F1-model_v2 AlphaFold Q8BHC7 1-315 view protein structure

RGD ID:6874226
Promoter ID:EPDNEW_M564
Type:initiation region
Name:Rhbdd1_1
Description:Mus musculus rhomboid domain containing 1 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M565  EPDNEW_M566  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38182,316,591 - 82,316,651EPDNEW
RGD ID:6874228
Promoter ID:EPDNEW_M565
Type:single initiation site
Name:Rhbdd1_2
Description:Mus musculus rhomboid domain containing 1 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M564  EPDNEW_M566  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38182,320,892 - 82,320,952EPDNEW
RGD ID:6874230
Promoter ID:EPDNEW_M566
Type:multiple initiation site
Name:Rhbdd1_3
Description:Mus musculus rhomboid domain containing 1 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M564  EPDNEW_M565  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38182,339,109 - 82,339,169EPDNEW


1 to 23 of 23 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000026142 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000027322 ENTREZGENE
  ENSMUST00000027322.14 UniProtKB/Swiss-Prot
  ENSMUST00000140020 ENTREZGENE
  ENSMUST00000140020.2 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.1540.10 UniProtKB/Swiss-Prot
InterPro Peptidase_S54_rhomboid_dom UniProtKB/Swiss-Prot
  Rhomboid-like_sf UniProtKB/Swiss-Prot
KEGG Report mmu:76867 UniProtKB/Swiss-Prot
MGD MGI:1924117 ENTREZGENE
NCBI Gene 76867 ENTREZGENE
PANTHER RHOMBOID-RELATED PROTEIN UniProtKB/Swiss-Prot
  RHOMBOID-RELATED PROTEIN 4 UniProtKB/Swiss-Prot
Pfam Rhomboid UniProtKB/Swiss-Prot
PhenoGen Rhbdd1 PhenoGen
Superfamily-SCOP SSF144091 UniProtKB/Swiss-Prot
UniProt Q8BHC7 ENTREZGENE
  Q99K13 ENTREZGENE
  Q99KD9_MOUSE UniProtKB/TrEMBL
  Q9D5L8 ENTREZGENE
  RHBL4_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q99K13 UniProtKB/Swiss-Prot
  Q9D5L8 UniProtKB/Swiss-Prot
1 to 23 of 23 rows