TIGD3 (tigger transposable element derived 3) - Rat Genome Database

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Gene: TIGD3 (tigger transposable element derived 3) Homo sapiens
Analyze
Symbol: TIGD3
Name: tigger transposable element derived 3
RGD ID: 1313398
HGNC Page HGNC:18334
Description: Predicted to enable DNA binding activity. Predicted to be active in nucleus.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: tigger transposable element-derived protein 3
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381165,354,751 - 65,357,613 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1165,354,751 - 65,357,613 (+)EnsemblGRCh38hg38GRCh38
GRCh371165,122,222 - 65,125,084 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361164,878,858 - 64,881,660 (+)NCBINCBI36Build 36hg18NCBI36
Build 341164,878,865 - 64,881,523NCBI
Celera1162,448,624 - 62,451,426 (+)NCBICelera
Cytogenetic Map11q13.1NCBI
HuRef1161,449,220 - 61,452,022 (+)NCBIHuRef
CHM1_11165,006,277 - 65,009,079 (+)NCBICHM1_1
T2T-CHM13v2.01165,348,054 - 65,350,916 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IBA,IEA)

Molecular Function
DNA binding  (IBA,IEA)
protein binding  (IPI)

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:9253601   PMID:12477932   PMID:15489334   PMID:21873635   PMID:22080934   PMID:28514442   PMID:32296183   PMID:33961781   PMID:35748872  


Genomics

Comparative Map Data
TIGD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381165,354,751 - 65,357,613 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1165,354,751 - 65,357,613 (+)EnsemblGRCh38hg38GRCh38
GRCh371165,122,222 - 65,125,084 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361164,878,858 - 64,881,660 (+)NCBINCBI36Build 36hg18NCBI36
Build 341164,878,865 - 64,881,523NCBI
Celera1162,448,624 - 62,451,426 (+)NCBICelera
Cytogenetic Map11q13.1NCBI
HuRef1161,449,220 - 61,452,022 (+)NCBIHuRef
CHM1_11165,006,277 - 65,009,079 (+)NCBICHM1_1
T2T-CHM13v2.01165,348,054 - 65,350,916 (+)NCBIT2T-CHM13v2.0
Tigd3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39195,941,166 - 5,944,156 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl195,941,166 - 5,944,177 (-)EnsemblGRCm39 Ensembl
GRCm38195,891,138 - 5,894,128 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl195,891,138 - 5,894,149 (-)EnsemblGRCm38mm10GRCm38
MGSCv37195,891,138 - 5,894,107 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36195,891,138 - 5,894,107 (-)NCBIMGSCv36mm8
Celera195,761,185 - 5,764,154 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map194.34NCBI
Tigd3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81212,607,772 - 212,612,683 (-)NCBIGRCr8
mRatBN7.21203,178,456 - 203,182,775 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1203,178,460 - 203,181,272 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1211,532,390 - 211,534,809 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01218,624,209 - 218,626,628 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01211,315,255 - 211,317,674 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01221,248,546 - 221,252,284 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1221,248,910 - 221,251,329 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01228,181,523 - 228,184,350 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41208,524,891 - 208,527,310 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11208,678,343 - 208,679,759 (-)NCBI
Celera1200,714,104 - 200,716,523 (-)NCBICelera
Cytogenetic Map1q43NCBI
Tigd3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542219,880,777 - 19,883,567 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542219,880,777 - 19,883,567 (-)NCBIChiLan1.0ChiLan1.0
TIGD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2966,588,980 - 66,593,247 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11167,631,095 - 67,638,178 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01160,718,678 - 60,722,729 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11164,058,468 - 64,060,611 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1164,058,807 - 64,060,222 (+)Ensemblpanpan1.1panPan2
TIGD3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11851,827,870 - 51,829,746 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1851,828,247 - 51,829,665 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1850,435,469 - 50,438,271 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01852,869,238 - 52,872,040 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1852,869,596 - 52,871,014 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11851,964,914 - 51,967,716 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01851,538,110 - 51,540,910 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01852,332,222 - 52,335,023 (-)NCBIUU_Cfam_GSD_1.0
Tigd3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049477,615,927 - 7,618,851 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365994,058,692 - 4,060,107 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365994,058,345 - 4,061,157 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TIGD3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl26,865,374 - 6,866,789 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.126,865,008 - 6,867,940 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.225,998,683 - 6,001,625 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TIGD3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.118,883,893 - 8,886,685 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl18,884,276 - 8,885,691 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038106,194,423 - 106,197,269 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tigd3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476721,026,887 - 21,029,559 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476721,026,778 - 21,029,599 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TIGD3
22 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
Single allele deletion Intellectual disability [RCV001293382] Chr11:118359328..118372573 [GRCh37]
Chr11:11p15.3-q23.3		 pathogenic
GRCh38/hg38 11q13.1(chr11:65327786-65626431)x3 copy number gain See cases [RCV000141334] Chr11:65327786..65626431 [GRCh38]
Chr11:65095257..65393902 [GRCh37]
Chr11:64851833..65150478 [NCBI36]
Chr11:11q13.1		 uncertain significance
GRCh37/hg19 11p15.5-q25(chr11:230616-134938470) copy number gain See cases [RCV000511729] Chr11:230616..134938470 [GRCh37]
Chr11:11p15.5-q25		 pathogenic
GRCh37/hg19 11q13.1-13.2(chr11:64501919-67129258)x3 copy number gain See cases [RCV000511632] Chr11:64501919..67129258 [GRCh37]
Chr11:11q13.1-13.2		 likely pathogenic
GRCh37/hg19 11p15.5-q25(chr11:230616-134938470)x3 copy number gain See cases [RCV000510881] Chr11:230616..134938470 [GRCh37]
Chr11:11p15.5-q25		 pathogenic
NM_145719.3(TIGD3):c.697G>A (p.Ala233Thr) single nucleotide variant not specified [RCV004322181] Chr11:65356505 [GRCh38]
Chr11:65123976 [GRCh37]
Chr11:11q13.1		 uncertain significance
NM_145719.3(TIGD3):c.1374C>G (p.Phe458Leu) single nucleotide variant not specified [RCV004332085] Chr11:65357182 [GRCh38]
Chr11:65124653 [GRCh37]
Chr11:11q13.1		 uncertain significance
GRCh37/hg19 11p15.5-q25(chr11:198510-134934063)x3 copy number gain not provided [RCV000737348] Chr11:198510..134934063 [GRCh37]
Chr11:11p15.5-q25		 pathogenic
GRCh37/hg19 11p15.5-q25(chr11:70864-134938470)x3 copy number gain not provided [RCV000749874] Chr11:70864..134938470 [GRCh37]
Chr11:11p15.5-q25		 pathogenic
GRCh37/hg19 11q13.1(chr11:65101315-65167325)x3 copy number gain not provided [RCV000750080] Chr11:65101315..65167325 [GRCh37]
Chr11:11q13.1		 benign
NM_145719.3(TIGD3):c.1271C>A (p.Ala424Asp) single nucleotide variant not specified [RCV004291459] Chr11:65357079 [GRCh38]
Chr11:65124550 [GRCh37]
Chr11:11q13.1		 uncertain significance
dup(11)(q13.1q13.1) duplication Ependymoma [RCV000785872] Chr11:63533279..65429676 [GRCh37]
Chr11:11q13.1		 likely pathogenic
NC_000011.9:g.(?_64973914)_(70052579_?)dup duplication Aicardi-Goutieres syndrome 3 [RCV003113322]|FADD-related immunodeficiency [RCV003107753] Chr11:64973914..70052579 [GRCh37]
Chr11:11q13.1-13.3		 uncertain significance
NC_000011.9:g.(?_59596957)_(68707199_?)dup duplication Familial temporal lobe epilepsy 8 [RCV001372442] Chr11:59596957..68707199 [GRCh37]
Chr11:11q12.1-13.3		 uncertain significance
GRCh37/hg19 11q13.1-13.2(chr11:64935724-66405514) copy number loss not specified [RCV002052930] Chr11:64935724..66405514 [GRCh37]
Chr11:11q13.1-13.2		 uncertain significance
NC_000011.9:g.(?_64522783)_(66283694_?)del deletion Bardet-Biedl syndrome [RCV002014493]|Glycogen storage disease, type V [RCV002004587] Chr11:64522783..66283694 [GRCh37]
Chr11:11q13.1-13.2		 pathogenic
GRCh37/hg19 11p13-q25(chr11:32799481-134938470)x3 copy number gain MISSED ABORTION [RCV002282973] Chr11:32799481..134938470 [GRCh37]
Chr11:11p13-q25		 pathogenic
NM_145719.3(TIGD3):c.677T>C (p.Ile226Thr) single nucleotide variant not specified [RCV004126643] Chr11:65356485 [GRCh38]
Chr11:65123956 [GRCh37]
Chr11:11q13.1		 uncertain significance
NM_145719.3(TIGD3):c.184G>A (p.Gly62Ser) single nucleotide variant not specified [RCV004202628] Chr11:65355992 [GRCh38]
Chr11:65123463 [GRCh37]
Chr11:11q13.1		 uncertain significance
NM_145719.3(TIGD3):c.1271C>G (p.Ala424Gly) single nucleotide variant not specified [RCV004227902] Chr11:65357079 [GRCh38]
Chr11:65124550 [GRCh37]
Chr11:11q13.1		 likely benign
NM_145719.3(TIGD3):c.397G>A (p.Val133Ile) single nucleotide variant not specified [RCV004113532] Chr11:65356205 [GRCh38]
Chr11:65123676 [GRCh37]
Chr11:11q13.1		 uncertain significance
NM_145719.3(TIGD3):c.311A>G (p.His104Arg) single nucleotide variant not specified [RCV004189643] Chr11:65356119 [GRCh38]
Chr11:65123590 [GRCh37]
Chr11:11q13.1		 uncertain significance
NM_145719.3(TIGD3):c.565T>A (p.Phe189Ile) single nucleotide variant not specified [RCV004082231] Chr11:65356373 [GRCh38]
Chr11:65123844 [GRCh37]
Chr11:11q13.1		 uncertain significance
NM_145719.3(TIGD3):c.314A>G (p.Lys105Arg) single nucleotide variant not specified [RCV004132675] Chr11:65356122 [GRCh38]
Chr11:65123593 [GRCh37]
Chr11:11q13.1		 uncertain significance
NM_145719.3(TIGD3):c.470A>G (p.Gln157Arg) single nucleotide variant not specified [RCV004254640] Chr11:65356278 [GRCh38]
Chr11:65123749 [GRCh37]
Chr11:11q13.1		 uncertain significance
NM_145719.3(TIGD3):c.1039G>A (p.Ala347Thr) single nucleotide variant not specified [RCV004306540] Chr11:65356847 [GRCh38]
Chr11:65124318 [GRCh37]
Chr11:11q13.1		 uncertain significance
NM_145719.3(TIGD3):c.1322T>C (p.Leu441Ser) single nucleotide variant not specified [RCV004349505] Chr11:65357130 [GRCh38]
Chr11:65124601 [GRCh37]
Chr11:11q13.1		 uncertain significance
GRCh37/hg19 11q12.2-13.5(chr11:59923608-76272324)x3 copy number gain not provided [RCV003484842] Chr11:59923608..76272324 [GRCh37]
Chr11:11q12.2-13.5		 pathogenic
GRCh37/hg19 11q13.1(chr11:64573225-65193732)x3 copy number gain not provided [RCV003484844] Chr11:64573225..65193732 [GRCh37]
Chr11:11q13.1		 uncertain significance
GRCh37/hg19 11q12.1-13.3(chr11:56895955-69295402)x3 copy number gain not specified [RCV003986944] Chr11:56895955..69295402 [GRCh37]
Chr11:11q12.1-13.3		 likely pathogenic
NM_145719.3(TIGD3):c.1009G>A (p.Val337Met) single nucleotide variant not specified [RCV004467287] Chr11:65356817 [GRCh38]
Chr11:65124288 [GRCh37]
Chr11:11q13.1		 uncertain significance
NM_145719.3(TIGD3):c.328G>A (p.Ala110Thr) single nucleotide variant not specified [RCV004467293] Chr11:65356136 [GRCh38]
Chr11:65123607 [GRCh37]
Chr11:11q13.1		 uncertain significance
NM_145719.3(TIGD3):c.857C>T (p.Pro286Leu) single nucleotide variant not specified [RCV004467295] Chr11:65356665 [GRCh38]
Chr11:65124136 [GRCh37]
Chr11:11q13.1		 uncertain significance
NM_145719.3(TIGD3):c.137C>T (p.Ser46Leu) single nucleotide variant not specified [RCV004467291] Chr11:65355945 [GRCh38]
Chr11:65123416 [GRCh37]
Chr11:11q13.1		 uncertain significance
NM_145719.3(TIGD3):c.1156G>A (p.Gly386Arg) single nucleotide variant not specified [RCV004467289] Chr11:65356964 [GRCh38]
Chr11:65124435 [GRCh37]
Chr11:11q13.1		 uncertain significance
NM_145719.3(TIGD3):c.1234A>G (p.Ile412Val) single nucleotide variant not specified [RCV004467290] Chr11:65357042 [GRCh38]
Chr11:65124513 [GRCh37]
Chr11:11q13.1		 uncertain significance
NM_145719.3(TIGD3):c.301A>G (p.Met101Val) single nucleotide variant not specified [RCV004467292] Chr11:65356109 [GRCh38]
Chr11:65123580 [GRCh37]
Chr11:11q13.1		 uncertain significance
NM_145719.3(TIGD3):c.440C>T (p.Pro147Leu) single nucleotide variant not specified [RCV004467294] Chr11:65356248 [GRCh38]
Chr11:65123719 [GRCh37]
Chr11:11q13.1		 uncertain significance
NM_145719.3(TIGD3):c.1118C>T (p.Ser373Phe) single nucleotide variant not specified [RCV004467288] Chr11:65356926 [GRCh38]
Chr11:65124397 [GRCh37]
Chr11:11q13.1		 uncertain significance
NM_145719.3(TIGD3):c.994G>A (p.Gly332Arg) single nucleotide variant not specified [RCV004676923] Chr11:65356802 [GRCh38]
Chr11:65124273 [GRCh37]
Chr11:11q13.1		 likely benign
NM_145719.3(TIGD3):c.401G>A (p.Gly134Asp) single nucleotide variant not specified [RCV004676927] Chr11:65356209 [GRCh38]
Chr11:65123680 [GRCh37]
Chr11:11q13.1		 uncertain significance
NM_145719.3(TIGD3):c.536C>T (p.Pro179Leu) single nucleotide variant not specified [RCV004686814] Chr11:65356344 [GRCh38]
Chr11:65123815 [GRCh37]
Chr11:11q13.1		 uncertain significance
NM_145719.3(TIGD3):c.1378G>A (p.Asp460Asn) single nucleotide variant not specified [RCV004676924] Chr11:65357186 [GRCh38]
Chr11:65124657 [GRCh37]
Chr11:11q13.1		 uncertain significance
NM_145719.3(TIGD3):c.195C>G (p.Asn65Lys) single nucleotide variant not specified [RCV004676926] Chr11:65356003 [GRCh38]
Chr11:65123474 [GRCh37]
Chr11:11q13.1		 uncertain significance
NM_145719.3(TIGD3):c.1121C>G (p.Ser374Trp) single nucleotide variant not specified [RCV004686813] Chr11:65356929 [GRCh38]
Chr11:65124400 [GRCh37]
Chr11:11q13.1		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:234
Count of miRNA genes:211
Interacting mature miRNAs:222
Transcripts:ENST00000309880
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357380BW64_HBody weight QTL 64 (human)2.2Body weightpercent fat after exercise training116097893786978937Human

Markers in Region
SHGC-53496  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371165,120,751 - 65,120,942UniSTSGRCh37
Build 361164,877,327 - 64,877,518RGDNCBI36
Celera1162,447,093 - 62,447,284RGD
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map11q13UniSTS
HuRef1161,447,689 - 61,447,880UniSTS
TNG Radiation Hybrid Map1128904.0UniSTS
G54111  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371165,120,360 - 65,120,472UniSTSGRCh37
Build 361164,876,936 - 64,877,048RGDNCBI36
Celera1162,446,702 - 62,446,814RGD
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map11q13UniSTS
HuRef1161,447,298 - 61,447,410UniSTS
RH45882  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371165,120,781 - 65,120,908UniSTSGRCh37
Build 361164,877,357 - 64,877,484RGDNCBI36
Celera1162,447,123 - 62,447,250RGD
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map11q13UniSTS
HuRef1161,447,719 - 61,447,846UniSTS
GeneMap99-GB4 RH Map11248.6UniSTS
D11S2302E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371165,120,283 - 65,120,373UniSTSGRCh37
GRCh376131,504,306 - 131,504,396UniSTSGRCh37
Build 366131,545,999 - 131,546,089RGDNCBI36
Celera6132,250,939 - 132,251,029RGD
Celera1162,446,625 - 62,446,715UniSTS
Cytogenetic Map6q23UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map11q13.1UniSTS
HuRef1161,447,221 - 61,447,311UniSTS
HuRef6129,085,563 - 129,085,653UniSTS
GeneMap99-GB4 RH Map11247.35UniSTS
NCBI RH Map11573.2UniSTS
TIGD3__5261  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371165,124,403 - 65,125,137UniSTSGRCh37
Build 361164,880,979 - 64,881,713RGDNCBI36
Celera1162,450,745 - 62,451,479RGD
HuRef1161,451,341 - 61,452,075UniSTS
SHGC-30608  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371165,124,934 - 65,125,061UniSTSGRCh37
Build 361164,881,510 - 64,881,637RGDNCBI36
Celera1162,451,276 - 62,451,403RGD
Cytogenetic Map11q13.1UniSTS
HuRef1161,451,872 - 61,451,999UniSTS
TNG Radiation Hybrid Map1128904.0UniSTS
Stanford-G3 RH Map112842.0UniSTS
GeneMap99-GB4 RH Map11247.74UniSTS
Whitehead-RH Map11336.6UniSTS
NCBI RH Map11573.2UniSTS
GeneMap99-G3 RH Map112842.0UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
1152 2394 2718 2174 4941 1694 2315 5 600 1937 442 2220 7118 6288 52 3725 837 1722 1604 172 1

Sequence


Ensembl Acc Id: ENST00000309880   ⟹   ENSP00000308354
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1165,354,751 - 65,357,613 (+)Ensembl
RefSeq Acc Id: NM_145719   ⟹   NP_663771
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381165,354,751 - 65,357,613 (+)NCBI
GRCh371165,122,282 - 65,125,084 (+)RGD
Build 361164,878,858 - 64,881,660 (+)NCBI Archive
Celera1162,448,624 - 62,451,426 (+)RGD
HuRef1161,449,220 - 61,452,022 (+)ENTREZGENE
CHM1_11165,006,277 - 65,009,079 (+)NCBI
T2T-CHM13v2.01165,348,054 - 65,350,916 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_663771 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH74862 (Get FASTA)   NCBI Sequence Viewer  
  EAW74378 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000308354
  ENSP00000308354.5
GenBank Protein Q6B0B8 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_663771   ⟸   NM_145719
- UniProtKB: Q6B0B8 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSP00000308354   ⟸   ENST00000309880
Protein Domains
DDE-1   HTH CENPB-type   HTH psq-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6B0B8-F1-model_v2 AlphaFold Q6B0B8 1-471 view protein structure

Promoters
RGD ID:6789432
Promoter ID:HG_KWN:13319
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_145719
Position:
Human AssemblyChrPosition (strand)Source
Build 361164,878,216 - 64,878,907 (+)MPROMDB
RGD ID:6788811
Promoter ID:HG_KWN:13320
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid
Transcripts:ENST00000394262
Position:
Human AssemblyChrPosition (strand)Source
Build 361164,878,841 - 64,879,442 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:18334 AgrOrtholog
COSMIC TIGD3 COSMIC
Ensembl Genes ENSG00000173825 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000309880 ENTREZGENE
  ENST00000309880.6 UniProtKB/Swiss-Prot
Gene3D-CATH Homeodomain-like UniProtKB/Swiss-Prot
GTEx ENSG00000173825 GTEx
HGNC ID HGNC:18334 ENTREZGENE
Human Proteome Map TIGD3 Human Proteome Map
InterPro CenT-Element_Derived UniProtKB/Swiss-Prot
  DDE_SF_endonuclease_dom UniProtKB/Swiss-Prot
  Homeobox-like_sf UniProtKB/Swiss-Prot
  HTH_CenpB_DNA-bd_dom UniProtKB/Swiss-Prot
  HTH_Psq UniProtKB/Swiss-Prot
KEGG Report hsa:220359 UniProtKB/Swiss-Prot
NCBI Gene 220359 ENTREZGENE
OMIM 619084 OMIM
PANTHER TIGGER TRANSPOSABLE ELEMENT-DERIVED PROTEIN 3 UniProtKB/Swiss-Prot
  TRANSPOSON UniProtKB/Swiss-Prot
Pfam CENP-B_N UniProtKB/Swiss-Prot
  DDE_1 UniProtKB/Swiss-Prot
  HTH_Tnp_Tc5 UniProtKB/Swiss-Prot
PharmGKB PA38527 PharmGKB
PROSITE HTH_CENPB UniProtKB/Swiss-Prot
  HTH_PSQ UniProtKB/Swiss-Prot
SMART CENPB UniProtKB/Swiss-Prot
Superfamily-SCOP SSF46689 UniProtKB/Swiss-Prot
UniProt Q6B0B8 ENTREZGENE, UniProtKB/Swiss-Prot