Tigd3 (tigger transposable element derived 3)

Gene: Tigd3 (tigger transposable element derived 3) Chinchilla lanigera

Analyze

Symbol:

Tigd3

Name:

tigger transposable element derived 3

RGD ID:

8982980

Description:

ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); Bardet-Biedl syndrome (ortholog); genetic disease (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

tigger transposable element-derived protein 3

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	19,880,777 - 19,883,567 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955422	19,880,777 - 19,883,567 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Aicardi-Goutieres Syndrome 3 (ISO)

Bardet-Biedl syndrome (ISO)

genetic disease (ISO)

glycogen storage disease V (ISO)

high grade glioma (ISO)

intellectual disability (ISO)

Recurrent Infections, with Encephalopathy, Hepatic Dysfunction, and Cardiovascular Malformations (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Tigd3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	19,880,777 - 19,883,567 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955422	19,880,777 - 19,883,567 (-)	NCBI	ChiLan1.0	ChiLan1.0

TIGD3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	65,354,751 - 65,357,613 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	65,354,751 - 65,357,613 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	65,122,222 - 65,125,084 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	64,878,858 - 64,881,660 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	64,878,865 - 64,881,523	NCBI
Celera	11	62,448,624 - 62,451,426 (+)	NCBI		Celera
Cytogenetic Map	11	q13.1	NCBI
HuRef	11	61,449,220 - 61,452,022 (+)	NCBI		HuRef
CHM1_1	11	65,006,277 - 65,009,079 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	65,348,054 - 65,350,916 (+)	NCBI		T2T-CHM13v2.0

Tigd3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	5,941,166 - 5,944,156 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	5,941,166 - 5,944,177 (-)	Ensembl		GRCm39 Ensembl
GRCm38	19	5,891,138 - 5,894,128 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	5,891,138 - 5,894,149 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	5,891,138 - 5,894,107 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	5,891,138 - 5,894,107 (-)	NCBI		MGSCv36	mm8
Celera	19	5,761,185 - 5,764,154 (-)	NCBI		Celera
Cytogenetic Map	19	A	NCBI
cM Map	19	4.34	NCBI

Tigd3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	212,607,772 - 212,612,683 (-)	NCBI		GRCr8
mRatBN7.2	1	203,178,456 - 203,182,775 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	203,178,460 - 203,181,272 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	211,532,390 - 211,534,809 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	218,624,209 - 218,626,628 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	211,315,255 - 211,317,674 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	221,248,546 - 221,252,284 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	221,248,910 - 221,251,329 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	228,181,523 - 228,184,350 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	208,524,891 - 208,527,310 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	208,678,343 - 208,679,759 (-)	NCBI
Celera	1	200,714,104 - 200,716,523 (-)	NCBI		Celera
Cytogenetic Map	1	q43	NCBI

TIGD3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	66,588,980 - 66,593,247 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	67,631,095 - 67,638,178 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	60,718,678 - 60,722,729 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	64,058,468 - 64,060,611 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	64,058,807 - 64,060,222 (+)	Ensembl	panpan1.1		panPan2

TIGD3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	51,827,870 - 51,829,746 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	51,828,247 - 51,829,665 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	50,435,469 - 50,438,271 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	52,869,238 - 52,872,040 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	52,869,596 - 52,871,014 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	51,964,914 - 51,967,716 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	51,538,110 - 51,540,910 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	52,332,222 - 52,335,023 (-)	NCBI		UU_Cfam_GSD_1.0

Tigd3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	7,615,927 - 7,618,851 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936599	4,058,692 - 4,060,107 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936599	4,058,345 - 4,061,157 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TIGD3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	6,865,374 - 6,866,789 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	6,865,008 - 6,867,940 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	5,998,683 - 6,001,625 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TIGD3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	8,883,893 - 8,886,685 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	8,884,276 - 8,885,691 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	106,194,423 - 106,197,269 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tigd3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624767	21,026,887 - 21,029,559 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624767	21,026,778 - 21,029,599 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005384499	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01023044	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01055732	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000024511 ⟹ ENSCLAP00000024276

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955422	19,880,777 - 19,883,567 (-)	Ensembl

RefSeq Acc Id:

XM_005384499 ⟹ XP_005384556

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955422	19,880,777 - 19,883,567 (-)	NCBI

Sequence:

show sequence

GAGAGCCCGGCGCGGGCGGCGCGGGGCCCTGCCGTGCGTGCACCCACCGCCTGCCGCCCGCGCA
GCCTCTCGGCCCGCTCCGCCTTCGCGGTCTTGGCGCTCTTCACCTCCTGCTCCGCGGTCGCCGC
CCGCCTACGGCTCGGGGGCTGGGCTGGGGACGGGGGCGGGAGCCGCGGGTCTAGCGCCTGAGGT
CTCCCGGAAGAGCTATGGAGCTGAACAGCAAGAAGAAGCTTCATGCCCTGTCCTTGGCTGAGAA
GATCCAGGTGCTCGAACTCCTGGATGAGTCCAAAATGTCCCAGTCGGAGGTGGCCCGGCGCTTC
CAGGTCTCACAGCCCCAGATCTCCCGCATCTGCAAGAATAAGGAGAAGCTGCTGGCGGACTGGT
GCAGCGGCACAGCCAACCGGGAGCGCAAGCGCAAGCGGGAGTCCAAGTACAGCGGGATCGATGA
GGCTCTGCTTTGCTGGTACCACATTGCCCGCGCCAAAGCCTGGGATATCACAGGGCCCATGCTG
CTCCACAAAGCCAAGGAACTGGCTGATATCATGGGCCAGGATTTTGTGCCCAGCATAGGCTGGC
TGGTCCGCTGGAAACGCCGCAATAATGTAGGCTTTGGGGCACGCCATGTCCTCGCCCCTCCATT
TCCTTCTGAGTCACCCACCCCAGCGCTCATGTGCCAGGCCCAACCGCCTCTTTCCCTTAAAGAC
TTCACCCCAGAAGATGTTTTTGGCTGTGCCGAAGTGCCCTTGCTGTATCGGGCAGTGCCTGGCA
AAAGAGTGCCATGTGATCAAGTACAGGTGCTACTGTGTGCCAACAGCAAGGGCACAGAGAAACG
GCGGATATTGGTGGGTGGGCTCCAGGCTGCCCCAAGATGCTTTTTTGGGGTCAGTAGTGAAGCA
CTGCCTGCCACCTACCATCCTGACCCAGGCATCCCTTGGTCAGAGTGGCTGGCACGGTTTGACC
AGGACATGGGGCAGCAAGGCCGAAAAGTAGCTTTGTTGCTGGCTGCCCGAGTGGTGGAGGAGTT
GGTGGGCCCTTCTGGGCTCCACCATGTGAGGCTCTTGCCCCTGGCCTCCTCCAGTACCACACCA
TCCCTGCCCAGCTCTGTGGTCTGGGCCTTTAAGGCCCATTACCGGCATCGTCTGCTGGGTAAGC
TGGCCGCAGTCCAGGCCAAGAGGGCTGGCGCCTCACTGGCCGAGGCTGGGACGGGGATCACAGA
GCTGGATGCTCTGCACATGGCTGCAGCCGCCTGGGCCAAGGTGCCCCCTCAGCTCATTTTGAGT
AGCTTCATTCAGGAAGGACTAGCTCCTGGCAAAACGCCTCCATCCCCAGACATAGCCTCTGAGA
TGCCACCAGTCCCCAGTGGGCTGAGCTGGGAGGAGTTTTCCCGATTCGTGGACCTGGAGGGTGA
GGAGGTAGGACCTGAAATATGCAAAGAGGAGACAGGCACTGAAGACCAAGAGGGAGCCAAGGAG
GACAGCTTTGAGCCCCTGCCCACCAAAGCTGATGCCCTGCAGGCCCTGGGCACCTTGCGGAGGT
GGTTTGAGTGCAACAGCTCTTCCCCCGAGCTCTTTGAAAAATTCTATGACTGTGAGGCAGAGGT
GGAGCGGCTCTGCAGCCTGTAGGGCGCCTGGGATGCCACCAGAGCCCCGCTGCTGTTTCCCATG
GAAACGCCTCTCCAGCAGCTGAGCTCTTTCCCATGGAAATGTGTGCGGAAGCTGTAGAAGGGAG
AGAAGTCGAGGCACCAAGTCTAAGCTCAGAGCAGAAGCCATCCAGGTCCTGAGAAGAAGTCTGA
GGCAGGGAGTCCAGGCCATGTGGTTCCTGGACCTTTGGTGAAGATTCTAGACCTTGGAAGAGCT
GGGACTTCGGAAGGTAGAACTTGGGCTTTACAGACAGTGGCTGCATCCCTTCAACTTCATGTTA
AAAACATTTCTGCTTCTGGAAATAAAGTTTTTCACTACAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005384556	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000024276
	ENSCLAP00000024276.1

RefSeq Acc Id:

XP_005384556 ⟸ XM_005384499

- UniProtKB:

A0A8C2W7L0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MELNSKKKLHALSLAEKIQVLELLDESKMSQSEVARRFQVSQPQISRICKNKEKLLADWCSGTA
NRERKRKRESKYSGIDEALLCWYHIARAKAWDITGPMLLHKAKELADIMGQDFVPSIGWLVRWK
RRNNVGFGARHVLAPPFPSESPTPALMCQAQPPLSLKDFTPEDVFGCAEVPLLYRAVPGKRVPC
DQVQVLLCANSKGTEKRRILVGGLQAAPRCFFGVSSEALPATYHPDPGIPWSEWLARFDQDMGQ
QGRKVALLLAARVVEELVGPSGLHHVRLLPLASSSTTPSLPSSVVWAFKAHYRHRLLGKLAAVQ
AKRAGASLAEAGTGITELDALHMAAAAWAKVPPQLILSSFIQEGLAPGKTPPSPDIASEMPPVP
SGLSWEEFSRFVDLEGEEVGPEICKEETGTEDQEGAKEDSFEPLPTKADALQALGTLRRWFECN
SSSPELFEKFYDCEAEVERLCSL

hide sequence

RefSeq Acc Id:

ENSCLAP00000024276 ⟸ ENSCLAT00000024511

Protein Domains

HTH CENPB-type HTH psq-type

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000016665	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000024511	ENTREZGENE
	ENSCLAT00000024511.1	UniProtKB/TrEMBL
Gene3D-CATH	Homeodomain-like	UniProtKB/TrEMBL
InterPro	DDE_SF_endonuclease_dom	UniProtKB/TrEMBL
	Homeobox-like_sf	UniProtKB/TrEMBL
	HTH_CenpB_DNA-bd_dom	UniProtKB/TrEMBL
	HTH_Psq	UniProtKB/TrEMBL
NCBI Gene	Tigd3	ENTREZGENE
PANTHER	TIGGER TRANSPOSABLE ELEMENT-DERIVED PROTEIN 3	UniProtKB/TrEMBL
	TRANSPOSON	UniProtKB/TrEMBL
Pfam	CENP-B_N	UniProtKB/TrEMBL
	DDE_1	UniProtKB/TrEMBL
	HTH_Tnp_Tc5	UniProtKB/TrEMBL
PROSITE	HTH_CENPB	UniProtKB/TrEMBL
	HTH_PSQ	UniProtKB/TrEMBL
SMART	CENPB	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46689	UniProtKB/TrEMBL
UniProt	A0A8C2W7L0	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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