Lyar (Ly1 antibody reactive clone) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Lyar (Ly1 antibody reactive clone) Mus musculus
Analyze
Symbol: Lyar
Name: Ly1 antibody reactive clone
RGD ID: 1313327
MGI Page MGI
Description: Predicted to enable several functions, including DNA-binding transcription factor binding activity; identical protein binding activity; and transcription regulator inhibitor activity. Involved in negative regulation of transcription by RNA polymerase II and positive regulation of phagocytosis. Located in nucleolus and photoreceptor outer segment. Is expressed in several structures, including gonad; hemolymphoid system; jaw; liver; and metanephros. Orthologous to human LYAR (Ly1 antibody reactive).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cell growth-regulating nucleolar protein; MLZ-264; protein expressed in male leptotene and zygotene spermatocytes 264
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39538,377,815 - 38,391,650 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl538,377,814 - 38,391,650 (+)EnsemblGRCm39 Ensembl
GRCm38538,220,471 - 38,234,306 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl538,220,470 - 38,234,306 (+)EnsemblGRCm38mm10GRCm38
MGSCv37538,611,721 - 38,625,545 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36538,508,799 - 38,522,546 (+)NCBIMGSCv36mm8
Celera535,670,252 - 35,684,076 (+)NCBICelera
Cytogenetic Map5B3NCBI
cM Map520.29NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (ISO)
2,6-dinitrotoluene  (ISO)
2-methylcholine  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (ISO)
antirheumatic drug  (ISO)
Aroclor 1254  (EXP)
arsenite(3-)  (EXP)
azoxystrobin  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
C60 fullerene  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
chlorpyrifos  (EXP)
chromium(6+)  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) chloride  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
dioxygen  (EXP,ISO)
diuron  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
flutamide  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
FR900359  (ISO)
hydrogen peroxide  (ISO)
ivermectin  (ISO)
menadione  (ISO)
methimazole  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
nickel atom  (ISO)
nitrates  (EXP)
ozone  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
pentachlorophenol  (EXP)
phenobarbital  (ISO)
pirinixic acid  (EXP)
resveratrol  (EXP)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (ISO)
sulfadimethoxine  (ISO)
sunitinib  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
thapsigargin  (ISO)
thioacetamide  (ISO)
trichloroethene  (ISO)
trimellitic anhydride  (EXP)
triptonide  (EXP)
valproic acid  (ISO)
vinclozolin  (ISO)
zearalenone  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
nucleolus  (IBA,IDA,ISO,ISS)
nucleoplasm  (IEA,ISO)
nucleus  (ISO,ISS)
photoreceptor outer segment  (IDA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8491376   PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11597144   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12904583  
PMID:14610273   PMID:15782199   PMID:16141072   PMID:16141073   PMID:18799693   PMID:20339383   PMID:20478998   PMID:21267068   PMID:21873635   PMID:22815056   PMID:23212345   PMID:23665500  
PMID:24990247   PMID:25092918   PMID:25735755   PMID:26206133   PMID:26336360   PMID:27746211   PMID:32098917   PMID:35449600   PMID:38355793  


Genomics

Comparative Map Data
Lyar
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39538,377,815 - 38,391,650 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl538,377,814 - 38,391,650 (+)EnsemblGRCm39 Ensembl
GRCm38538,220,471 - 38,234,306 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl538,220,470 - 38,234,306 (+)EnsemblGRCm38mm10GRCm38
MGSCv37538,611,721 - 38,625,545 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36538,508,799 - 38,522,546 (+)NCBIMGSCv36mm8
Celera535,670,252 - 35,684,076 (+)NCBICelera
Cytogenetic Map5B3NCBI
cM Map520.29NCBI
LYAR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3844,267,701 - 4,290,154 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl44,267,701 - 4,290,154 (-)EnsemblGRCh38hg38GRCh38
GRCh3744,269,428 - 4,291,881 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3644,320,337 - 4,342,744 (-)NCBINCBI36Build 36hg18NCBI36
Celera44,167,051 - 4,189,521 (-)NCBICelera
Cytogenetic Map4p16.3NCBI
HuRef44,205,115 - 4,227,579 (-)NCBIHuRef
CHM1_144,267,309 - 4,289,782 (-)NCBICHM1_1
T2T-CHM13v2.044,237,159 - 4,259,618 (-)NCBIT2T-CHM13v2.0
Lyar
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81476,789,193 - 76,802,973 (-)NCBIGRCr8
mRatBN7.21472,576,878 - 72,590,854 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1472,576,879 - 72,590,612 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1477,018,568 - 77,032,136 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01478,259,442 - 78,273,010 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01474,699,518 - 74,713,086 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01477,308,211 - 77,321,931 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1477,308,204 - 77,321,977 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01477,290,073 - 77,303,793 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41477,859,637 - 77,873,205 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11477,862,030 - 77,875,596 (-)NCBI
Celera1471,527,386 - 71,540,966 (-)NCBICelera
Cytogenetic Map14q21NCBI
Lyar
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555145,358,843 - 5,376,112 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555145,358,843 - 5,375,990 (+)NCBIChiLan1.0ChiLan1.0
LYAR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v234,534,513 - 4,557,030 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan144,467,357 - 4,489,984 (-)NCBINHGRI_mPanPan1
PanPan1.144,348,263 - 4,370,716 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl44,348,263 - 4,364,347 (-)Ensemblpanpan1.1panPan2
LYAR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1369,710,735 - 69,724,175 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl369,710,735 - 69,724,177 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha372,262,732 - 72,281,663 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0370,467,687 - 70,486,622 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl370,467,692 - 70,486,574 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1369,741,785 - 69,760,718 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0369,906,935 - 69,925,842 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0370,288,339 - 70,307,278 (-)NCBIUU_Cfam_GSD_1.0
Lyar
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528563,232,715 - 63,257,046 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493647716,934,401 - 16,958,722 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LYAR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl86,081,368 - 6,099,857 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.186,081,332 - 6,099,861 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.285,776,295 - 5,794,805 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LYAR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12740,410,849 - 40,433,942 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604787,211,025 - 87,233,986 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lyar
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475521,434,144 - 21,450,124 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Lyar
661 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1381
Count of miRNA genes:541
Interacting mature miRNAs:665
Transcripts:ENSMUST00000087514, ENSMUST00000114106, ENSMUST00000123207, ENSMUST00000130721, ENSMUST00000131492, ENSMUST00000132190, ENSMUST00000146401, ENSMUST00000152066, ENSMUST00000154975, ENSMUST00000155300
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
36049766Ars22_mantibody response to SARS-CoV 22, day 29, IgG3 (mouse)53695734445457342Mouse
4140990Lgq6_mlate growth QTL 6 (mouse)Not determined32133234100777931Mouse
36049767Ars23_mantibody response to SARS-CoV 23, day 29, Total IgG (mouse)53695734445457342Mouse
10043995Hbnr9_mHeligmosomoides bakeri nematode resistance 9 (mouse)Not determined53348866767488876Mouse
1301776Skts3_mskin tumor susceptibility 3 (mouse)Not determined52166729555667403Mouse
1300951Gbvq1_mgallstone bladder volume QTL 1 (mouse)Not determined53811168172111798Mouse
1301845Lxw4_mlupus BXSB x NZW 4 (mouse)Not determined53569446269694594Mouse
1301524Lmb2_mlupus in MRL and B6 F2 cross (mouse)Not determined537581488112465722Mouse
1301403Alcp9_malcohol preference locus 9 (mouse)Not determined53102427565024480Mouse
36049774Ars16_mantibody response to SARS-CoV 16, day 7, Total IgG (mouse)53695734445457342Mouse
36049775Ars17_mantibody response to SARS-CoV 17, day 15, IgG2a+IgG2c (mouse)53695734445457342Mouse
36049772Ars20_mantibody response to SARS-CoV 20, day 15, Total IgG (mouse)53695734445457342Mouse
36049773Ars21_mantibody response to SARS-CoV 21, day 29, IgG2a+IgG2c (mouse)53695734445457342Mouse
36049770Ars14_mantibody response to SARS-CoV 14, day 7, IgG3 (mouse)53695734445457342Mouse
36049771Ars15_mantibody response to SARS-CoV 15, day 7, IgM (mouse)53695734445457342Mouse
1300701Cd8ts1_mCD8 T cell subset 1 (mouse)Not determined52721534861215451Mouse
11353827Hplq1_mhot plate latency 1 (mouse)53157045865570458Mouse
36049768Ars24_mantibody response to SARS-CoV 24, 4 days post-rechallenge, IgG3 (mouse)53695734445457342Mouse
36049769Ars13_mantibody response to SARS-CoV 13, day 7, IgG2a+IgG2c (mouse)53695734445457342Mouse
36049776Ars18_mantibody response to SARS-CoV 18, day 15, IgG3 (mouse)53695734445457342Mouse
36049777Ars19_mantibody response to SARS-CoV 19, day 15, IgM (mouse)53695734445457342Mouse
4141219W10q16_mweight 10 weeks QTL 16 (mouse)Not determined32133234100777931Mouse
1301555Alcp10_malcohol preference locus 10 (mouse)Not determined53102427565024480Mouse
1301170Lith13_mlithogenic gene 13 (mouse)Not determined53649448670494598Mouse
1301685Estq2_mestradiol regulated response QTL 2 (mouse)Not determined51563408449634190Mouse
11537367Hmtb11_mhemostasis and thrombosis 11 (mouse)52210082364806579Mouse
4141207Imrfq1_mimmune response to Factor IX QTL 1 (mouse)Not determined5812411742124239Mouse
11537368Hmtb10_mhemostasis and thrombosis 10 (mouse)52210082354500318Mouse
1300926Hpi2_mhepatic PMN infiltration 2 (mouse)Not determined53758148864806579Mouse
1301693Sle6_msystemic lupus erythematosus susceptibility 6 (mouse)Not determined5889069387841837Mouse
4141647Hrvhf1_mheart rate variability, high frequency 1 (mouse)Not determined3643342370433423Mouse
11049561Lmr24e_mleishmaniasis resistance 24e (mouse)53569446269694594Mouse
13464252Ahl10_mage related hearing loss, early onset 10 (mouse)53585456869854714Mouse
1357478Kdnw1_mkidney weight 1 (mouse)Not determined5891594940529869Mouse
1301223Hdlq7_mHDL QTL 7 (mouse)Not determined53585456869854714Mouse
13464245Ahl12_mage related hearing loss, early onset 12 (mouse)53811168172111798Mouse
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
14696730Kidlq1_mkidney weight, left QTL 1 (mouse)51356315247563152Mouse
13464246Ahl11_mage related hearing loss, early onset 11 (mouse)53764377771643896Mouse
1300719Iba5_minduction of brown adipocytes 5 (mouse)Not determined52068699354687134Mouse
1301806Actd2_mactivity-distance traveled 2 (mouse)Not determined5538452039384652Mouse
11049558Lmr24b_mleishmaniasis resistance 24b (mouse)53569446269694594Mouse
35673310Ari4_mantibody response to influenza 4, day 15-45, IgG2b (mouse)53695734445457342Mouse
11049559Lmr24c_mleishmaniasis resistance 24c (mouse)53569446269694594Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001424421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_025281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006503764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006503766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC115931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK006373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK076727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC116923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC116927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY099797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD776101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S60885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000087514   ⟹   ENSMUSP00000084791
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl538,377,814 - 38,391,650 (+)Ensembl
GRCm38.p6 Ensembl538,220,470 - 38,234,306 (+)Ensembl
Ensembl Acc Id: ENSMUST00000114106   ⟹   ENSMUSP00000109741
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl538,378,022 - 38,391,640 (+)Ensembl
GRCm38.p6 Ensembl538,220,678 - 38,234,296 (+)Ensembl
Ensembl Acc Id: ENSMUST00000123207   ⟹   ENSMUSP00000121204
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl538,377,864 - 38,385,259 (+)Ensembl
GRCm38.p6 Ensembl538,220,520 - 38,227,915 (+)Ensembl
Ensembl Acc Id: ENSMUST00000130721   ⟹   ENSMUSP00000122153
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl538,377,826 - 38,388,047 (+)Ensembl
GRCm38.p6 Ensembl538,220,482 - 38,230,703 (+)Ensembl
Ensembl Acc Id: ENSMUST00000131492
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl538,381,992 - 38,383,804 (+)Ensembl
GRCm38.p6 Ensembl538,224,648 - 38,226,460 (+)Ensembl
Ensembl Acc Id: ENSMUST00000132190   ⟹   ENSMUSP00000121320
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl538,377,871 - 38,388,048 (+)Ensembl
GRCm38.p6 Ensembl538,220,527 - 38,230,704 (+)Ensembl
Ensembl Acc Id: ENSMUST00000146401   ⟹   ENSMUSP00000114506
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl538,380,309 - 38,388,027 (+)Ensembl
GRCm38.p6 Ensembl538,222,965 - 38,230,683 (+)Ensembl
Ensembl Acc Id: ENSMUST00000152066   ⟹   ENSMUSP00000118035
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl538,377,894 - 38,383,257 (+)Ensembl
GRCm38.p6 Ensembl538,220,550 - 38,225,913 (+)Ensembl
Ensembl Acc Id: ENSMUST00000154975   ⟹   ENSMUSP00000118337
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl538,377,873 - 38,388,332 (+)Ensembl
GRCm38.p6 Ensembl538,220,529 - 38,230,988 (+)Ensembl
Ensembl Acc Id: ENSMUST00000155300   ⟹   ENSMUSP00000122486
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl538,377,898 - 38,385,443 (+)Ensembl
GRCm38.p6 Ensembl538,220,554 - 38,228,099 (+)Ensembl
Ensembl Acc Id: ENSMUST00000202506   ⟹   ENSMUSP00000144609
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl538,377,872 - 38,387,963 (+)Ensembl
GRCm38.p6 Ensembl538,220,528 - 38,230,619 (+)Ensembl
RefSeq Acc Id: NM_001424421   ⟹   NP_001411350
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39538,377,842 - 38,391,643 (+)NCBI
RefSeq Acc Id: NM_001424422   ⟹   NP_001411351
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39538,377,842 - 38,391,643 (+)NCBI
RefSeq Acc Id: NM_001424423   ⟹   NP_001411352
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39538,377,842 - 38,391,643 (+)NCBI
RefSeq Acc Id: NM_001424424   ⟹   NP_001411353
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39538,377,842 - 38,391,643 (+)NCBI
RefSeq Acc Id: NM_001424425   ⟹   NP_001411354
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39538,377,842 - 38,391,643 (+)NCBI
RefSeq Acc Id: NM_001424426   ⟹   NP_001411355
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39538,377,842 - 38,391,643 (+)NCBI
RefSeq Acc Id: NM_001424427   ⟹   NP_001411356
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39538,377,842 - 38,391,643 (+)NCBI
RefSeq Acc Id: NM_001424428   ⟹   NP_001411357
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39538,377,842 - 38,391,643 (+)NCBI
RefSeq Acc Id: NM_001424429   ⟹   NP_001411358
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39538,377,842 - 38,391,643 (+)NCBI
RefSeq Acc Id: NM_001424430   ⟹   NP_001411359
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39538,377,842 - 38,391,643 (+)NCBI
RefSeq Acc Id: NM_001424431   ⟹   NP_001411360
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39538,377,842 - 38,391,643 (+)NCBI
RefSeq Acc Id: NM_025281   ⟹   NP_079557
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39538,377,842 - 38,391,643 (+)NCBI
GRCm38538,220,482 - 38,234,306 (+)ENTREZGENE
MGSCv37538,611,721 - 38,625,545 (+)RGD
Celera535,670,252 - 35,684,076 (+)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006503764   ⟹   XP_006503827
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39538,377,817 - 38,391,650 (+)NCBI
GRCm38538,220,472 - 38,234,306 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006503766   ⟹   XP_006503829
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39538,377,815 - 38,391,650 (+)NCBI
GRCm38538,220,471 - 38,234,306 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254182   ⟹   XP_030110042
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39538,377,815 - 38,391,650 (+)NCBI
GRCm38538,220,471 - 38,234,306 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001411350 (Get FASTA)   NCBI Sequence Viewer  
  NP_001411351 (Get FASTA)   NCBI Sequence Viewer  
  NP_001411352 (Get FASTA)   NCBI Sequence Viewer  
  NP_001411353 (Get FASTA)   NCBI Sequence Viewer  
  NP_001411354 (Get FASTA)   NCBI Sequence Viewer  
  NP_001411355 (Get FASTA)   NCBI Sequence Viewer  
  NP_001411356 (Get FASTA)   NCBI Sequence Viewer  
  NP_001411357 (Get FASTA)   NCBI Sequence Viewer  
  NP_001411358 (Get FASTA)   NCBI Sequence Viewer  
  NP_001411359 (Get FASTA)   NCBI Sequence Viewer  
  NP_001411360 (Get FASTA)   NCBI Sequence Viewer  
  NP_079557 (Get FASTA)   NCBI Sequence Viewer  
  XP_006503827 (Get FASTA)   NCBI Sequence Viewer  
  XP_006503829 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110042 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB26644 (Get FASTA)   NCBI Sequence Viewer  
  AAI16924 (Get FASTA)   NCBI Sequence Viewer  
  AAI16928 (Get FASTA)   NCBI Sequence Viewer  
  BAB24554 (Get FASTA)   NCBI Sequence Viewer  
  BAC36458 (Get FASTA)   NCBI Sequence Viewer  
  EDL37545 (Get FASTA)   NCBI Sequence Viewer  
  EDL37546 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000084791
  ENSMUSP00000084791.3
  ENSMUSP00000109741
  ENSMUSP00000109741.2
  ENSMUSP00000114506.2
  ENSMUSP00000118035.2
  ENSMUSP00000118337.2
  ENSMUSP00000121204.2
  ENSMUSP00000121320.2
  ENSMUSP00000122153.2
  ENSMUSP00000122486.2
  ENSMUSP00000144609.2
GenBank Protein Q08288 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_079557   ⟸   NM_025281
- Peptide Label: isoform 1
- UniProtKB: Q08288 (UniProtKB/Swiss-Prot),   Q9D9X2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006503827   ⟸   XM_006503764
- Peptide Label: isoform X1
- UniProtKB: Q08288 (UniProtKB/Swiss-Prot),   Q9D9X2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006503829   ⟸   XM_006503766
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_030110042   ⟸   XM_030254182
- Peptide Label: isoform X2
Ensembl Acc Id: ENSMUSP00000122153   ⟸   ENSMUST00000130721
Ensembl Acc Id: ENSMUSP00000144609   ⟸   ENSMUST00000202506
Ensembl Acc Id: ENSMUSP00000118035   ⟸   ENSMUST00000152066
Ensembl Acc Id: ENSMUSP00000121320   ⟸   ENSMUST00000132190
Ensembl Acc Id: ENSMUSP00000114506   ⟸   ENSMUST00000146401
Ensembl Acc Id: ENSMUSP00000084791   ⟸   ENSMUST00000087514
Ensembl Acc Id: ENSMUSP00000118337   ⟸   ENSMUST00000154975
Ensembl Acc Id: ENSMUSP00000109741   ⟸   ENSMUST00000114106
Ensembl Acc Id: ENSMUSP00000121204   ⟸   ENSMUST00000123207
Ensembl Acc Id: ENSMUSP00000122486   ⟸   ENSMUST00000155300
RefSeq Acc Id: NP_001411352   ⟸   NM_001424423
- Peptide Label: isoform 1
- UniProtKB: Q9D9X2 (UniProtKB/Swiss-Prot),   Q08288 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001411350   ⟸   NM_001424421
- Peptide Label: isoform 1
- UniProtKB: Q9D9X2 (UniProtKB/Swiss-Prot),   Q08288 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001411354   ⟸   NM_001424425
- Peptide Label: isoform 1
- UniProtKB: Q9D9X2 (UniProtKB/Swiss-Prot),   Q08288 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001411353   ⟸   NM_001424424
- Peptide Label: isoform 1
- UniProtKB: Q9D9X2 (UniProtKB/Swiss-Prot),   Q08288 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001411358   ⟸   NM_001424429
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001411351   ⟸   NM_001424422
- Peptide Label: isoform 1
- UniProtKB: Q9D9X2 (UniProtKB/Swiss-Prot),   Q08288 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001411356   ⟸   NM_001424427
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001411355   ⟸   NM_001424426
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001411360   ⟸   NM_001424431
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001411359   ⟸   NM_001424430
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001411357   ⟸   NM_001424428
- Peptide Label: isoform 4
Protein Domains
Acetyl-coA carboxylase zinc finger   Zinc finger C2H2 LYAR-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q08288-F1-model_v2 AlphaFold Q08288 1-388 view protein structure

Promoters
RGD ID:6886580
Promoter ID:EPDNEW_M6741
Type:initiation region
Name:Lyar_1
Description:Mus musculus Ly1 antibody reactive clone , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M6742  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38538,220,510 - 38,220,570EPDNEW
RGD ID:6886582
Promoter ID:EPDNEW_M6742
Type:initiation region
Name:Lyar_2
Description:Mus musculus Ly1 antibody reactive clone , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M6741  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38538,220,638 - 38,220,698EPDNEW
RGD ID:6837884
Promoter ID:MM_KWN:42103
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000075525,   ENSMUST00000114106,   ENSMUST00000114113,   ENSMUST00000114114,   OTTMUST00000056454,   OTTMUST00000056457,   OTTMUST00000056459,   OTTMUST00000056461,   OTTMUST00000056462,   OTTMUST00000056471,   OTTMUST00000056514,   OTTMUST00000056515,   OTTMUST00000056516,   OTTMUST00000056518,   OTTMUST00000056520,   UC008XGE.1,   UC008XGG.1,   UC008XGI.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36538,611,506 - 38,612,006 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:107470 AgrOrtholog
Ensembl Genes ENSMUSG00000067367 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000087514 ENTREZGENE
  ENSMUST00000087514.9 UniProtKB/Swiss-Prot
  ENSMUST00000114106 ENTREZGENE
  ENSMUST00000114106.8 UniProtKB/Swiss-Prot
  ENSMUST00000123207.8 UniProtKB/TrEMBL
  ENSMUST00000130721.8 UniProtKB/TrEMBL
  ENSMUST00000132190.8 UniProtKB/TrEMBL
  ENSMUST00000146401.2 UniProtKB/TrEMBL
  ENSMUST00000152066.8 UniProtKB/TrEMBL
  ENSMUST00000154975.8 UniProtKB/TrEMBL
  ENSMUST00000155300.8 UniProtKB/TrEMBL
  ENSMUST00000202506.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.2100 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.1490.490 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro LYAR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf-ACC UniProtKB/TrEMBL
  Znf_C2H2_LYAR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:17089 UniProtKB/Swiss-Prot
MGD MGI:107470 ENTREZGENE
NCBI Gene 17089 ENTREZGENE
PANTHER CELL GROWTH-REGULATING NUCLEOLAR PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR13100 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam zf-ACC UniProtKB/TrEMBL
  zf-LYAR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Lyar PhenoGen
PROSITE ZF_C2HC_LYAR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0J9YVD4_MOUSE UniProtKB/TrEMBL
  D3YU83_MOUSE UniProtKB/TrEMBL
  D3Z009_MOUSE UniProtKB/TrEMBL
  D3Z345_MOUSE UniProtKB/TrEMBL
  D3Z5X8_MOUSE UniProtKB/TrEMBL
  D3Z7N3_MOUSE UniProtKB/TrEMBL
  D6RDT2_MOUSE UniProtKB/TrEMBL
  LYAR_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q9D9X2 ENTREZGENE
UniProt Secondary Q9D9X2 UniProtKB/Swiss-Prot