Lrrn4 (leucine rich repeat neuronal 4) - Rat Genome Database

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Gene: Lrrn4 (leucine rich repeat neuronal 4) Mus musculus
Analyze
Symbol: Lrrn4
Name: leucine rich repeat neuronal 4
RGD ID: 1313179
MGI Page MGI
Description: Acts upstream of or within long-term memory and visual learning. Located in plasma membrane. Is expressed in intraembryonic coelom; midgut; reproductive system; and urogenital sinus. Orthologous to human LRRN4 (leucine rich repeat neuronal 4).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: B430119L13Rik; leucine-rich repeat neuronal protein 4; neuronal leucine rich repeat-4; neuronal leucine-rich repeat protein 4; NLRR-4; Nlrr4; RP23-77H16.6
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392132,710,436 - 132,735,930 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2132,710,225 - 132,722,811 (-)EnsemblGRCm39 Ensembl
GRCm382132,866,686 - 132,894,010 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2132,868,305 - 132,880,891 (-)EnsemblGRCm38mm10GRCm38
MGSCv372132,694,252 - 132,706,598 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362132,559,957 - 132,572,303 (-)NCBIMGSCv36mm8
Celera2134,096,013 - 134,108,361 (-)NCBICelera
Cytogenetic Map2F2NCBI
cM Map264.78NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
plasma membrane  (IBA,IDA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:14610273   PMID:15870286   PMID:16141072   PMID:16141073   PMID:18287559   PMID:18799693   PMID:21267068   PMID:21873635  
PMID:23069668   PMID:23701859   PMID:24192035   PMID:36575170  


Genomics

Comparative Map Data
Lrrn4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392132,710,436 - 132,735,930 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2132,710,225 - 132,722,811 (-)EnsemblGRCm39 Ensembl
GRCm382132,866,686 - 132,894,010 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2132,868,305 - 132,880,891 (-)EnsemblGRCm38mm10GRCm38
MGSCv372132,694,252 - 132,706,598 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362132,559,957 - 132,572,303 (-)NCBIMGSCv36mm8
Celera2134,096,013 - 134,108,361 (-)NCBICelera
Cytogenetic Map2F2NCBI
cM Map264.78NCBI
LRRN4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38206,040,546 - 6,054,060 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl206,040,546 - 6,054,060 (-)EnsemblGRCh38hg38GRCh38
GRCh37206,021,192 - 6,034,706 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36205,969,426 - 5,982,676 (-)NCBINCBI36Build 36hg18NCBI36
Build 34205,969,423 - 5,982,676NCBI
Celera206,092,695 - 6,105,965 (-)NCBICelera
Cytogenetic Map20p12.3NCBI
HuRef205,977,570 - 5,991,103 (-)NCBIHuRef
CHM1_1206,021,215 - 6,034,747 (-)NCBICHM1_1
T2T-CHM13v2.0206,080,866 - 6,094,379 (-)NCBIT2T-CHM13v2.0
Lrrn4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83140,592,303 - 140,603,986 (-)NCBIGRCr8
mRatBN7.23120,138,093 - 120,150,877 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3120,139,410 - 120,150,831 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.03125,521,879 - 125,547,685 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3125,523,781 - 125,533,600 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03132,005,657 - 132,017,224 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43120,667,859 - 120,678,960 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13120,573,457 - 120,582,891 (-)NCBI
Celera3118,924,058 - 118,938,227 (-)NCBICelera
Cytogenetic Map3q36NCBI
Lrrn4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541516,411,369 - 16,423,814 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541516,413,666 - 16,423,605 (-)NCBIChiLan1.0ChiLan1.0
LRRN4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2216,964,414 - 6,978,584 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1206,960,874 - 6,978,842 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0206,037,097 - 6,052,341 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1205,820,854 - 5,834,178 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl205,820,854 - 5,834,178 (-)Ensemblpanpan1.1panPan2
LRRN4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12415,801,220 - 15,810,954 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2415,803,125 - 15,810,930 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2415,623,936 - 15,633,180 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02416,204,375 - 16,213,624 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12415,811,132 - 15,820,384 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02415,918,191 - 15,928,529 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02416,250,952 - 16,260,205 (+)NCBIUU_Cfam_GSD_1.0
Lrrn4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640164,606,938 - 164,618,047 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648513,039,430 - 13,047,375 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648513,039,430 - 13,049,359 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LRRN4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11714,895,954 - 14,908,112 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21716,009,862 - 16,022,226 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LRRN4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1232,078,993 - 32,092,725 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl232,083,313 - 32,091,660 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607112,448,425 - 12,460,382 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lrrn4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247416,857,658 - 6,864,825 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247416,855,911 - 6,865,972 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:450
Count of miRNA genes:318
Interacting mature miRNAs:366
Transcripts:ENSMUST00000049787
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302033Nsv1_mNeuroadapted Sindbis viral RNA level 1 (mouse)Not determined2111623386145623526Mouse
1301905Lgth2_mbody length 2 (mouse)Not determined2111173704145173821Mouse
13506763Tbvq1_mtrabecular bone volume QTL 1 (mouse)2126041920135441920Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)261830344136841920Mouse
11039520Ltpr2h_mLeishmania tropica response 2h (mouse)2112212746146213005Mouse
11039521Ltpr2g_mLeishmania tropica response 2g (mouse)2115212857149212994Mouse
12910799Pwgrq2_mpre-weaning growth rate QTL 2 (mouse)2118589253160611165Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
12910795Pwbwq5_mpost-weaning body weight QTL 5 (mouse)2118589253160611165Mouse
27226761Feml18_mfemur length 18, 16 week (mouse)294230345154241920Mouse
12910812Pwgrq1_mpre-weaning growth rate QTL 1 (mouse)2118589253160611165Mouse
12910814Pwbwq1_mpre-weaning body weight QTL 1 (mouse)2118589253160611165Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
1302071Fembrs1_mfemur breaking strength 1 (mouse)Not determined2100942930134943090Mouse
10045885Cplaq15_mcircadian period of locomotor activity 15 (mouse)Not determined2110916118154354667Mouse
1302203Gvhd3_mgraft-versus host disease 3 (mouse)Not determined2100942930134943090Mouse
1300793Pcfm2_mperiosteal circumference and femur length 2 (mouse)Not determined2111173704145173821Mouse
10412082Hylaq1_mHyperlocomotor activity related QTL 1 (mouse)Not determined284013198148667470Mouse
1301822Pgia2_mproteoglycan induced arthritis 2 (mouse)Not determined2123937311157937424Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
1301031Bdln3_mbody length 3 (mouse)Not determined2127664019161664118Mouse
1301029T2dm3_mtype 2 diabetes mellitus 3 (mouse)Not determined2114288075132714157Mouse
27226788Feml13_mfemur length 13, 10 week (mouse)2102630345159941920Mouse
1301295Prdt1_mprion disease incubation time 1 (mouse)Not determined2116077623150077741Mouse
1301294Hrtfm5_mheart failure modifier 5 (mouse)Not determined2122883015156883131Mouse
11038696Ltpr2f_mLeishmania tropica response 2f (mouse)2115212857149212994Mouse
1301330Tbbmd2_mtotal body bone mineral density 2 (mouse)Not determined2100942930134943090Mouse
1301201Chab1_mcholesterol absorption 1 (mouse)Not determined2111551028145551163Mouse
11038699Ltpr2b_mLeishmania tropica response 2b (mouse)2112212746146213005Mouse
11038700Ltpr2a_mLeishmania tropica response 2a (mouse)2112212746146213005Mouse
11038702Ltpr2_mLeishmania tropica response 2 (mouse)2103095716167212356Mouse
1301087Bbaa15_mB.burgdorferi-associated arthritis 15 (mouse)Not determined2110489658144489807Mouse
1301825Pbrgcsf1_mperipheral blood stem cell response to granulocyte colony stimulating factor 1 (mouse)Not determined2106233580140233729Mouse
4141802Ignpq1_mIgA nephropathy QTL 1 (mouse)Not determined2100824060134824269Mouse
1558990Skmw9_mskeletal muscle weight 9 (mouse)Not determined2111173704145173821Mouse
1301066Otx2m2_morthodenticle homolog 2 (Drosophila) modifier 2 (mouse)Not determined2123231973148700377Mouse
1301961Bts1_mbladder tumor susceptibility 1 (mouse)Not determined2132024159166024330Mouse
1558989Gnf4_mgrowth and fatness 4 (mouse)Not determined2128173704132714157Mouse
4141155Plast2b_mplasma plant sterol 2b (mouse)Not determined284013198148522175Mouse
1301618Bglu1_mblood glucose level 1 (mouse)Not determined2117942930174324863Mouse
27226749Femd10_mfemur midshaft diameter 10, 16 week (mouse)2124441920168241920Mouse
1301755Hrq1_mheart rate quantitative locus 1 (mouse)Not determined2111173704145173821Mouse
13207586Mwmlpt2_mMorris water maze latency to platform, training, 2 (mouse)2131616184139216184Mouse
1302143Bwq5_mbody weight (mouse)Not determined2127664019161664118Mouse
13207590Mwmlpa2_mMorris water maze latency to platform, all, 2 (mouse)2131616184139616184Mouse
12880427V25Dq3_mvitamin D inactive form serum level QTL 3 (mouse)2129341920163341920Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245347635145312647Mouse
1558881Ses7_msalmonella enteritidis susceptibility 7 (mouse)Not determined2116306330150306474Mouse
10043875Bw25_mbody weight QTL 25 (mouse)Not determined2107255676141255676Mouse
1300712El2_mepilepsy 2 (mouse)Not determined2122207146142532135Mouse

Markers in Region
D2Mit106  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382132,872,088 - 132,872,237UniSTSGRCm38
MGSCv372132,697,824 - 132,697,973UniSTSGRCm37
Celera2134,099,585 - 134,099,735UniSTS
Cytogenetic Map2F2UniSTS
cM Map275.6UniSTS
Whitehead Genetic261.2UniSTS
Whitehead_YAC2 UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000049787   ⟹   ENSMUSP00000057005
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2132,710,225 - 132,722,811 (-)Ensembl
GRCm38.p6 Ensembl2132,868,305 - 132,880,891 (-)Ensembl
RefSeq Acc Id: NM_177303   ⟹   NP_796277
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392132,710,436 - 132,722,782 (-)NCBI
GRCm382132,868,516 - 132,880,862 (-)NCBI
MGSCv372132,694,252 - 132,706,598 (-)RGD
Celera2134,096,013 - 134,108,361 (-)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011239602   ⟹   XP_011237904
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392132,710,610 - 132,735,930 (-)NCBI
GRCm382132,866,686 - 132,894,010 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030251770   ⟹   XP_030107630
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392132,711,427 - 132,715,618 (-)NCBI
GRCm382132,868,690 - 132,873,698 (-)NCBI
Sequence:
RefSeq Acc Id: NP_796277   ⟸   NM_177303
- Peptide Label: precursor
- UniProtKB: A2ANX0 (UniProtKB/Swiss-Prot),   P59383 (UniProtKB/Swiss-Prot),   Q6EI14 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011237904   ⟸   XM_011239602
- Peptide Label: isoform X1
- UniProtKB: A2ANX0 (UniProtKB/Swiss-Prot),   P59383 (UniProtKB/Swiss-Prot),   Q6EI14 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030107630   ⟸   XM_030251770
- Peptide Label: isoform X2
Ensembl Acc Id: ENSMUSP00000057005   ⟸   ENSMUST00000049787
Protein Domains
Fibronectin type-III   LRRCT

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P59383-F1-model_v2 AlphaFold P59383 1-733 view protein structure

Promoters
RGD ID:6878870
Promoter ID:EPDNEW_M2886
Type:initiation region
Name:Lrrn4_1
Description:Mus musculus leucine rich repeat neuronal 4 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382132,880,884 - 132,880,944EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2445154 AgrOrtholog
Ensembl Genes ENSMUSG00000043110 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000049787 ENTREZGENE
  ENSMUST00000049787.3 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.80.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro FN3_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FN3_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SLRP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:320974 UniProtKB/Swiss-Prot
MGD MGI:2445154 ENTREZGENE
NCBI Gene 320974 ENTREZGENE
PANTHER AGAP008170-PA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LEUCINE RICH REPEAT FAMILY PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam fn3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRR_8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Lrrn4 PhenoGen
PROSITE FN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART FN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRR_TYP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF49265 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2ANX0 ENTREZGENE
  LRRN4_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q6EI14 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A2ANX0 UniProtKB/Swiss-Prot