LRRN4 (leucine rich repeat neuronal 4) - Rat Genome Database

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Gene: LRRN4 (leucine rich repeat neuronal 4) Sus scrofa
Analyze
Symbol: LRRN4
Name: leucine rich repeat neuronal 4
RGD ID: 14002461
Description: INVOLVED IN long-term memory (ortholog); visual learning (ortholog); ASSOCIATED WITH genetic disease (ortholog); Huntington's disease-like 1 (ortholog); pantothenate kinase-associated neurodegeneration (ortholog); FOUND IN plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: leucine-rich repeat neuronal protein 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11714,895,954 - 14,908,112 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21716,009,862 - 16,022,226 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
LRRN4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11714,895,954 - 14,908,112 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21716,009,862 - 16,022,226 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LRRN4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38206,040,546 - 6,054,060 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl206,040,546 - 6,054,060 (-)EnsemblGRCh38hg38GRCh38
GRCh37206,021,192 - 6,034,706 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36205,969,426 - 5,982,676 (-)NCBINCBI36Build 36hg18NCBI36
Build 34205,969,423 - 5,982,676NCBI
Celera206,092,695 - 6,105,965 (-)NCBICelera
Cytogenetic Map20p12.3NCBI
HuRef205,977,570 - 5,991,103 (-)NCBIHuRef
CHM1_1206,021,215 - 6,034,747 (-)NCBICHM1_1
T2T-CHM13v2.0206,080,866 - 6,094,379 (-)NCBIT2T-CHM13v2.0
Lrrn4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392132,710,436 - 132,735,930 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2132,710,225 - 132,722,811 (-)EnsemblGRCm39 Ensembl
GRCm382132,866,686 - 132,894,010 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2132,868,305 - 132,880,891 (-)EnsemblGRCm38mm10GRCm38
MGSCv372132,694,252 - 132,706,598 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362132,559,957 - 132,572,303 (-)NCBIMGSCv36mm8
Celera2134,096,013 - 134,108,361 (-)NCBICelera
Cytogenetic Map2F2NCBI
cM Map264.78NCBI
Lrrn4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83140,592,303 - 140,603,986 (-)NCBIGRCr8
mRatBN7.23120,138,093 - 120,150,877 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3120,139,410 - 120,150,831 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.03125,521,879 - 125,547,685 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3125,523,781 - 125,533,600 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03132,005,657 - 132,017,224 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43120,667,859 - 120,678,960 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13120,573,457 - 120,582,891 (-)NCBI
Celera3118,924,058 - 118,938,227 (-)NCBICelera
Cytogenetic Map3q36NCBI
Lrrn4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541516,411,369 - 16,423,814 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541516,413,666 - 16,423,605 (-)NCBIChiLan1.0ChiLan1.0
LRRN4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2216,964,414 - 6,978,584 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1206,960,874 - 6,978,842 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0206,037,097 - 6,052,341 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1205,820,854 - 5,834,178 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl205,820,854 - 5,834,178 (-)Ensemblpanpan1.1panPan2
LRRN4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12415,801,220 - 15,810,954 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2415,803,125 - 15,810,930 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2415,623,936 - 15,633,180 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02416,204,375 - 16,213,624 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12415,811,132 - 15,820,384 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02415,918,191 - 15,928,529 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02416,250,952 - 16,260,205 (+)NCBIUU_Cfam_GSD_1.0
Lrrn4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640164,606,938 - 164,618,047 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648513,039,430 - 13,047,375 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648513,039,430 - 13,049,359 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LRRN4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1232,078,993 - 32,092,725 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl232,083,313 - 32,091,660 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607112,448,425 - 12,460,382 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lrrn4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247416,857,658 - 6,864,825 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247416,855,911 - 6,865,972 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in LRRN4
376 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_003359892   ⟹   XP_003359940
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11714,895,954 - 14,908,112 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003359940 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00055045480.1
Reference Protein Sequences
RefSeq Acc Id: XP_003359940   ⟸   XM_003359892
- UniProtKB: A0A8D1UDH3 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Fibronectin type-III


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00055028645 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00055056861.1 UniProtKB/TrEMBL
Gene3D-CATH Immunoglobulins UniProtKB/TrEMBL
  Ribonuclease Inhibitor UniProtKB/TrEMBL
InterPro FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
NCBI Gene LRRN4 ENTREZGENE
PANTHER FISH-LIPS, ISOFORM E UniProtKB/TrEMBL
  SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN UniProtKB/TrEMBL
Pfam fn3 UniProtKB/TrEMBL
  LRR_8 UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/TrEMBL
SMART FN3 UniProtKB/TrEMBL
  LRR_TYP UniProtKB/TrEMBL
Superfamily-SCOP Fibronectin type III UniProtKB/TrEMBL
  L domain-like UniProtKB/TrEMBL
UniProt A0A8D1UDH3 ENTREZGENE, UniProtKB/TrEMBL